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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0227600 |
| Transcript ID | LotjaGi1g1v0227600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | E3 ubiquitin-protein ligase RGLG2-like protein; TAIR: AT5G14420.1 RING domain ligase2; Swiss-Prot: sp|Q9LY87|RGLG2_ARATH E3 ubiquitin-protein ligase RGLG2; TrEMBL-Plants: tr|V7AXG0|V7AXG0_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0227600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:52752796..52757755) extracted from Lotus japonicus Gifu genome v1.2.
CTCTTTAATTATAATTGAAGGAATGCACTAGTGCATTGTTAAATTCTGTTGCCAAAAGTGGGTGAAGTGAAGTGCAAAGA GAGAGAGAGAAGAGAGAGAGAAACTTCGAGGAAACAACGTTTCACCGTTCATCAACATCAAACAACATATCCATCCATTG TTAACTTTTATCAATCAGCGGCCACTGATACTGACACACTCACCTTCTTCCTTCCATTTCCACTGCTTTAAGGTATCATT TTTCCCCACATTTTGCATTCAATTTCTGATTTGGAATGTATATACATATATTGATAATAACTTTGCAAATTTGCTAAATT TCCCCCCTTAAAGATTAATCTGAGTTGAAGAATTTTATACAATGGGTAGAATTTTGGAGAGTTGAAACTTGAAAGCTGTT GTGAGAAAAGGGTGTTTCTTTAAATGGCATTCTTTCCTAAAAAGAATGTGGCTTTGATGAAAATGAAGTAAAGTTCTGAC TCTGAGATTTGATTTGATTCGAATTGCTTTTATGGGTCTGTTGAATTTCTTTAGGATAAAGAATCTATGGGTGGATCAAG TTCAAAAAGGGTGAATTCAAGGCAACGTTCCTCTTCAAGGTCCGGTTCAACTCCCTGGTATCCTCAATATCAATCACCTT ACTTGCCACAAAACCAAGATCATGGGGCTCCTCAGGGGCATGAAGGGCATCATCATCCATCTCAAAGCTATGGTAGTGCT GGTGGTTATGCTCCCGAGCAAAGAAAGAGATCAGACAAGAAGTATACAAGGATAGATGATAACTATAAAAGCTTGGACCA GGTAGCTTTTCTCTGCTCCCTGATTCTCAATGGATTAAATGTAGAGTAACATGGCCTCAGGGGAATCCATGATATCTGTT GAATGTTTTCCTGTGTTTATTCTGAGTGGAACTGTCCCTGCATTTTGAGTTTATGGTCTGGAGTCTATTTTGGTTAGGTC TTCAATCATTGGGAACAATTTGATGCTTCAAGTTTAATGATGCATGGTTTCTATTTTAGTTCATTGTTCAGATCTTTTTT TAAAGAAAACAGTGTGAATTTGTGAAGCTAATGAAACATTTTCTTCTCTTGATCTTGCAACTAGTTCTTTTGATTATTTT CTGGACATTGTCATTATAAAGATGGTGATAATTTTGTTGAAAGAAAAGTTTTCCTTTTTGCTTTCTATTTTCTGCTAGTT GTAATTGTTATTCATATTTTCTGTGACATTCTGATGTATGTTTTTTTACACATTTGAAGGTAACTGAGGCTCTTGCAAAT GCTGGTTTGGAGTCTTCCAATCTCATTGTTGGTATTGATTTTACAAAGAGCAATGAGTGGACAGGTTTTTGCTTTATTTG ACTAATCTCCTTTATTTTCTTCCTCTTGTAATTGAGTTAACATGCTGCATAACTTGCTTTTGTATTAGGTGCAAGGTCAT TTCAAAGAAGATGCCTACATCACATCGGGCATGAACAGAATCCATATGAACAAGCTATATCTATCATTGGGAAAACATTA TCCTCCTTTGATGAAGATAACTTAATTCCCTGTTATGGATTTGGAGATGGTAATTGAGATAAATTGTTATGAATTGCATT CATTCCTTTTAGAATCTAATCTAATGTCATAGTGACTTATATTGTGTGTGGGTTTACATGTTGGCAGCATCAACACATGA CCAGGAAGTTTTTAGTTTCAATCCCGATGAGAGATTTTGTCAAGGATTTGAAGAAGTGTTGACACGGTACAGGGAATTGG TTCCACAATTAAAGCTTGCAGGTATTGTATCAGTGGTCAAACTTCATGTCCATTTTTATTGTATTTTATTCAGCTTTTCG CTTATCCTATTTTTGGCCCTAACTCACGGCAGGACCAACATCATTTGGTCCAATCATCGAGATGGCAATCACCATAGTTG AGCAAAGTGGAGGCCAATACCATGTCTTGGTGATCATAGCAGATGGCCAGGTAGAGCATTATCTGAATTGGACTTTTTTT TTTTATATTAATGGTTTTACTCTTATGAAAAGTGTGGGGTTGTTGATGGTGAAATTCATACCTTAAATACTGTACCTTGA CATTGAAATTAAAGTAAGAATTAGTTGTAGTTCTTATGTGGAGATATCAAGAAACTTAGAGATGATATTGGCTGAGCAGC ATACTGGCATGGTGCAAACGTGCTTGCCATTGGCCATCAATTAGCAATTGGAGAAGTATGATAAATGAATTGATGTTGGG GATTGTCAATTTGTTGCAGGTGACAAGAAGTGTTGACACCGAGCGTGGGCAGTTGAGTTCTCAAGAAAAGAAAACTGTAG AAGCTATTGTGAAAGCTAGGTAATTATCTGCCTGTGTTGCATGATTCCTGCTGTTGTTTGTAATATTTTTAACATGTCTT CACTGCCGTTACAAATAAATGTTTTTATTTCCAGTGAATATCCCCTGTCAATCATATTAGTTGGAGTTGGGGATGGGCCA TGGGATATGATGAAAGAATTTGACGATAACATCCCTGCCCGAGCATTTGATAATTTCCAGGCAAGTATCTCCTGCTCAAA AGTTGTCATTTTTTGTGTCCTCCAAGTATGTTCTGCTTATGTTCTCAATAATGATAAACTTAATTGATTTTTTCCCACTC CCAATGTTTTTGTAGTTTGTGAATTTCACAGAAATAATGTCAAAGAACATGGATCGGTCCAGAAAGGAAACTGAGTTTGC ACTTGCTGCATTGATGGAAATACCCTCCCAATATAAGGCAACACTAGAACTTAATATATTGGGGTAACAATGTTAATTTA TTTTCTTTGTATGTTTTGGTGCATTATATATAGCATTTGTTTATAAAGCCACTCAAAATTTTCTGAACAGTGCACGTAGA GGGAAAGCTATCGACAGGATTCCTCTACCACCACCTCTATATGGTGCCACCGCATCTTACAACTCCCCAAAAACTTCACG TCAAAGCAGTTTTCGTCCCAGTGCACCATCTCACAGGCATGACATTGGCACGAATCCTCCTGCAAGTTTTGCAAGTTCTG CTTCTGATAATCAGGTATATGTCCACTCTTTGCTTTCTCTCACTGTTAGTTCACTGTCACTGCAGTTGCATGTCTACTTC CCCTTGTCATTCTCAATCCTCATGTAGGAGGTCTATTTTGTGGATTGCTTGCGACATCTTTTTGATGCTCGTTAATGGTG AAGTCCCTCAAACCAGAAGTTTCAAAAGCTTTTAATGGGGTCTATGAGAGAAATGAACTTTACATAAGCCTTTTCTATCT GAAGAAATTATTCATCAAAATAATTATTCACCATTGATATCGACTCACTGTGGCACTCAGAAAGAGACCTTTTATATACA AACACCATAAACTAATCTGTTATGTAATCCTTGCAGGTTTGTCCCATTTGCCTCACCGATCCTAAGAATATGGCCTTTGG TTGTGGGCATCAGGTTAGGAAGCTACCCACTTCACATTTTTCTCATATTAGTTCAGTTTTAGATAATTGAATCATGAATA CCCATTAGTTATGTGAGTCATCTTTATTAATTTGCAGACATGCTGTGAGTGCGGACAAGATCTTGAGTTATGCCCCATTT GCAGGAGTACCATTGATACTAGAATAAAACTTTATTAGATGATAGCTCTGAAAACTTGTCCATGGCTTTTCATGTGGAGC TATGGAACTGAGGTTTCTACAACTTTCTTGGTGATGGGGGAGGAGCTGGAGGATGGGTGGAAAGGTTGCTTACTAGTTCC ACATTGTAAATATTTCTGGTATCTATTATTTTTTAAGTCCATGCTTTGAACGCATTTTATATTAGAGTTGGAGATTCACA TTGTTAAATTAATTTTGTGGCAATTCATCAATATAATGTTAATTGTTCTTTCTTCAAAATCTTGTGCCTTGTTATGCATT TCTTGTTTATGTTCCGTGGGTTCAAAATTAGCACAACTATGACTTTGCTTGTCACTCGGTACGAGTCAATTTCATACACT ATCAGCATGTCTGTGATCATGAAATGAGGTGCTGGTTCGGGTCTTTAGCAGCATGATCTGGCGAATTCAGTCATTGGAAT GAAGTAACATGAAATAATTTTAAAATTAATATGATGAAGTGTTGGATGATGAAAAGAAAATGCTTTCCATTTGATTCTTA CCTTTGTTTTTCTTCAAATTGGGAGGCACGTGATGTAAATTTTGCACACTACCTAAAAGATGGAGCAATTTTATTCTTTT ATCCTCACAAAATATCCACTAATGTAGTAATTTTGTTGCGTTCAATTTTCATTACATTCCTTTATTCACCCACCCAGCCG TCCATCAATGTCATGTATCCAAACATAGCATAGGCTGAGTTTAATATAAAAGTTAGATTAGCACTTTGTTTTCACAAGTT TGCTACAAACATGAAAATGGATGGGAATAAAATCTGCACATAAACCGTACATGTCAATTTTCCTGACAAAATTGGCGACA AAATGGACTGGGTAGAAGGAATAAATAGTAAAATGACACCAATACTATTCTTGAATAAACCCTAAGACTTAAAAATAGGC TGGATGAGAAACGAAACCTTAGAGTTGTATTCAATAAAGAGATGGACATAAAATTAGTATAGACGACCCCCTTTATATAG TAGCTAGGTCATCCGCCATGATAGCACCTGACGCGTTTTTCCTTGGTAAGTCTAACGTGTCAACTAAACGAACCTAGGCC GCTCTCTGGGCCTCATCATGCTGGGTCATCCTTCCTTTACTGGCCAAGCCCAATTTCTCATACCTACGTTGGTCGCCCCG AAAACCCCAATGGTACATACACCCTTTTAAATTTATACTTTATTAAGTTACCTTTTTATACTCTTTGTCAGTTTGGTTTG GTTATTGTTGGTGTGGCAAAATGAGTTTGGTGTATTAGGCTGACTCATTTAACCCGATTTTTGTTCCAATCTTTTATAGA
CDS sequence (LotjaGi1g1v0227600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGTGGATCAAGTTCAAAAAGGGTGAATTCAAGGCAACGTTCCTCTTCAAGGTCCGGTTCAACTCCCTGGTATCCTCA ATATCAATCACCTTACTTGCCACAAAACCAAGATCATGGGGCTCCTCAGGGGCATGAAGGGCATCATCATCCATCTCAAA GCTATGGTAGTGCTGGTGGTTATGCTCCCGAGCAAAGAAAGAGATCAGACAAGAAGTATACAAGGATAGATGATAACTAT AAAAGCTTGGACCAGGTAACTGAGGCTCTTGCAAATGCTGGTTTGGAGTCTTCCAATCTCATTGTTGGTATTGATTTTAC AAAGAGCAATGAGTGGACAGGTGCAAGGTCATTTCAAAGAAGATGCCTACATCACATCGGGCATGAACAGAATCCATATG AACAAGCTATATCTATCATTGGGAAAACATTATCCTCCTTTGATGAAGATAACTTAATTCCCTGTTATGGATTTGGAGAT GCATCAACACATGACCAGGAAGTTTTTAGTTTCAATCCCGATGAGAGATTTTGTCAAGGATTTGAAGAAGTGTTGACACG GTACAGGGAATTGGTTCCACAATTAAAGCTTGCAGGACCAACATCATTTGGTCCAATCATCGAGATGGCAATCACCATAG TTGAGCAAAGTGGAGGCCAATACCATGTCTTGGTGATCATAGCAGATGGCCAGGTGACAAGAAGTGTTGACACCGAGCGT GGGCAGTTGAGTTCTCAAGAAAAGAAAACTGTAGAAGCTATTGTGAAAGCTAGTGAATATCCCCTGTCAATCATATTAGT TGGAGTTGGGGATGGGCCATGGGATATGATGAAAGAATTTGACGATAACATCCCTGCCCGAGCATTTGATAATTTCCAGT TTGTGAATTTCACAGAAATAATGTCAAAGAACATGGATCGGTCCAGAAAGGAAACTGAGTTTGCACTTGCTGCATTGATG GAAATACCCTCCCAATATAAGGCAACACTAGAACTTAATATATTGGGTGCACGTAGAGGGAAAGCTATCGACAGGATTCC TCTACCACCACCTCTATATGGTGCCACCGCATCTTACAACTCCCCAAAAACTTCACGTCAAAGCAGTTTTCGTCCCAGTG CACCATCTCACAGGCATGACATTGGCACGAATCCTCCTGCAAGTTTTGCAAGTTCTGCTTCTGATAATCAGGTTTGTCCC ATTTGCCTCACCGATCCTAAGAATATGGCCTTTGGTTGTGGGCATCAGACATGCTGTGAGTGCGGACAAGATCTTGAGTT ATGCCCCATTTGCAGGAGTACCATTGATACTAGAATAAAACTTTATTAG
Protein sequence (LotjaGi1g1v0227600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGGSSSKRVNSRQRSSSRSGSTPWYPQYQSPYLPQNQDHGAPQGHEGHHHPSQSYGSAGGYAPEQRKRSDKKYTRIDDNY KSLDQVTEALANAGLESSNLIVGIDFTKSNEWTGARSFQRRCLHHIGHEQNPYEQAISIIGKTLSSFDEDNLIPCYGFGD ASTHDQEVFSFNPDERFCQGFEEVLTRYRELVPQLKLAGPTSFGPIIEMAITIVEQSGGQYHVLVIIADGQVTRSVDTER GQLSSQEKKTVEAIVKASEYPLSIILVGVGDGPWDMMKEFDDNIPARAFDNFQFVNFTEIMSKNMDRSRKETEFALAALM EIPSQYKATLELNILGARRGKAIDRIPLPPPLYGATASYNSPKTSRQSSFRPSAPSHRHDIGTNPPASFASSASDNQVCP ICLTDPKNMAFGCGHQTCCECGQDLELCPICRSTIDTRIKLY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 76 | 76 | - | – | |
| MobiDBLite | 1 | 37 | 37 | - | – | |
| PANTHER | 1 | 442 | 442 | 5.8E-253 | – | |
| PANTHER | 1 | 442 | 442 | 5.8E-253 | – | |
| CDD | 76 | 326 | 251 | 1.42464E-111 | ||
| SMART | 97 | 300 | 204 | 5.9E-10 | ||
| SUPERFAMILY | 99 | 281 | 183 | 1.24E-12 | ||
| Pfam | 122 | 335 | 214 | 2.0E-76 | ||
| Gene3D | 125 | 307 | 183 | 4.0E-5 | ||
| MobiDBLite | 357 | 393 | 37 | - | – | |
| MobiDBLite | 357 | 374 | 18 | - | – | |
| Gene3D | 381 | 442 | 62 | 2.3E-11 | ||
| SUPERFAMILY | 391 | 437 | 47 | 6.36E-6 | – | |
| Pfam | 396 | 437 | 42 | 4.0E-8 | – | |
| CDD | 398 | 442 | 45 | 1.05485E-24 | – | |
| ProSiteProfiles | 399 | 432 | 34 | 10.675 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0227600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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