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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0248700 |
| Transcript ID | LotjaGi1g1v0248700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Rhomboid-like protein; TAIR: AT1G77860.2 Rhomboid-related intramembrane serine protease family protein; Swiss-Prot: sp|F4I8K2|RBL8_ARATH RHOMBOID-like protein 8; TrEMBL-Plants: tr|A0A1J7GBZ3|A0A1J7GBZ3_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0248700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:59671559..59678619) extracted from Lotus japonicus Gifu genome v1.2.
CAGTCACACCGTCACAAACTATATAAACACAAAAGAAAAGAGGTTTCCCGCCAAACACAACAAACTAATCAACTCTGTTC GTTCTCTCTCTTTCTCTCTTGAATTTTCCCGGAAAATCAATGGCGGAAAGTTCCGAATTCATTGAAATGAACCTGTGGCC TCCTACGAAGTTCGCACCCGATCGTCCTCCCCAAGATCCGCCGGTGAAATCAATCCCGCGGCGGCGCCGAGTGGATACGT GGGTGGTGTCGGTGCTGGTAATCATCCAAATCGGTGTTTTCATCGCCACCATGCTCGTCAACGATTGCTGGACCAATTCT CACGGCGATTGTGCTCTCCCTGCTCTCGGAAGGCTCTCCTTCCAGCCTCTCTCCGAGAATCCCCTCTTAGGTCCTTCTCA GTCCAAGTGAGTAGCACAGTAATCATCATTCACTATAGTGTGTGTTTACTGATGTGATTTTCGTCTTTCTATTTGGTTCA AGTTGATTCATCACATTGATGCTCTAATTTAGGGTTCATAGCAATTTGTGTGTGTGTGTTCACTGATGTGATTTTCGTCT TTGTTTTTGGTGCAAGTTGATTCTCCACATTGATGCTCTAATTTAGGTTTCATTAGTTCTGTTACGAAATAGAAAGTGCC AGAAAGTGATAGAAAGTGTGAGAAGATTGAAACGAAAATCTGAGAGAATTTCAGTTCTGTAGAGTTGATTTTGATGCAGA GCTGTTGCTATAATTTCATGAGATAGTGGATTGCTAGTTGAATCTGTAACTGCAAGGTAGTTAGTCTGGTCAGATTCTGT TAAAAATGACCACGTCACAGAACTCTATACAACTGGACGAGCTAGCATAAAACCACATGAGCTGACTGAAGCTCAACACT GACACTGACTGCATTACAGTAATTTAGATATAATGCAGACACTTTGATAGGTTATATTTGCAGAAAAATAGTTGGAAATT TGGAGGATCTGGTTTGAGAATCAAATGTTAAAATGTAACAAATGTATATGATAATATTCTAAGTTAGTGGCTATGATAGT TTATTTTTTGAAGGATGACTTTGGTGTGGCTTATTCTAAGTTAGGAGCGATGTTTTGTTAAACATAGAGAGAGAGTGTTG AGAGGAAAATTGATCATTGTATTAACTGAGATAAAAGAGTTACATATACATATAAAAAGATGCTGGAGTTGGTTCTGAAT CTTAGAAATTCTGTCAGGATTGGGCCCTGCAACTATAATATCGTCGACATACACAAGAAGAGCCACAAAATCAGAACCTG AGCCAATAGTAAAAAGAGAGTAATCTGATCTAGATTGTCTGAAGCCAAGAGTGAGGAGTTAAGAAGAGAACTTATGAAAA CATTGCCGTGGCGCTTGTTTAAGCCATAAATGGATTTGTGCAACTTGCAAACTAAATTCTCCCCCTAAACCTTGTAGCCT AGGGGAAGGTCCATGTAAACTTCCTCGATTAACTCCCCATTCAAAAAGGCATTATTGATATCTAACTTGAGGAGGGACCA TTTTTTTGACTGCTGCCAAAGAGAGAAGAACTTTAACTGTTGTCAGTTTCGCAACCGGTGAGAAAGTAGCAGTAAAATCA ATGCCTGCTTGTTGCGTGTAGCCTTTAGCTAGTAATCGAGCTTTTAGTCTTTCCACTGATCCATCAGACCTTGTTTTCAC CTTGTAAATCCACCTGGATCCGATGGTTTGTTTGCCTGCAGGTAGTTTAACAACAGACCAAGGATTGTTGTTTTCCATGG CCTGTAATTCTTCTTGCATTGTCTGTTGCCAACCTCTATCATGGCATTGTGGTTAAAAAATAGTGGAAATCTGTCCCACA GAAGTCCTGTATTAGGAAGATAACTTGTCATAAGAAATGTAGTTTGTGTGATCCAATTTATCCAAGGAATACTGATGGAA CTGATCTAGGACTGAACTTGTCTCTCTGTGATGGCAATGTAGATGCATAAGCCAGACAGCCAAATACCTTCAAGTTAGCA TAGTTGGCTCCTTATTGTACAATAAACTGTACGGACATTCCATTTTTAGAGCTAAAGGGTACAGCTAAACTGTATCATAC ATTAGTCATTGTATCTGGTTCAAGTTGATTCTCCACATTGATGCTCTAATTTAGGTTTATTGGTTCTGTTATGAAAGAGC TGTGAGAAAGTGATAGAAAGTGTGAGAAAATTAATAGGAAAATCTGATAGAATTTCAGCATTGTAGAGTTGATTCCGATT TAGAGTTGTTGCTGTGATTACATGAGATTTCTCCATATTGATGCTCTAATTTAGGTTTCGTAGCAATTAGTCTTGTGTGT TTACTGATTGATTTTCGTCTTTGTATTTGGTTCAAGCTCAAGCTGATTCTCCACATTGATGCTTTAATTTAGGTTTCATA GCAATTAGTCATGTGTGCTTATGATGTGATTTTCGCTATTTGTCTGGTTCAAACTTCAAACTGATTCTCCTCAATGATGC TCTAGTTTAGGGTTCATACCAATTAGTTGTGTGTGTTTAATGATTTGATTTTTTTGATTGCATTTGGTTCAATCTGGTTC TCCACATTGATGCTCTAATTTAGGTTTTCACTGGTTCTGTTATGAAATAGAGAGTGCCAGAAAATGATAGAAAGTGTGAG GCGGAAAATCTGATAGAATTTCATTATTGTAGAGTTGATTCTGATGCTGAGTTGTTACTGTAATTACATGAGATTTCTCC ATATTGATGTTCTAATATAGGTTTCATAGCAATTATTCTTGCGTGTTTACTGATTGATTTTCGTCTTTGTATTTGTTCAA GCTCAAGCTGATTCTCCACATGGATGCTTTAATTTAGGTTTCATAGCAATCAGTGGTGTGTGTTCAATGATGTGATTTTC TTTGTATTTGGTTCAAGCTGATTCTCCACATTGATGCTTTAATTTAGGTTTCATAGCAATCAGCGGTGTGTGTTCATTGA TGTGATTTTCTTTGTATTTGGTTCAAGCTGATTCATTACACTGATGCTCTAATTTAGGTTTCATTGGTTCTGTTACGAAT CAGAGTGAGAAAATGATAGAAAGTGTGAAAAAATTAATAGGGAAATCTGAGAGAATTTCAGTATGGTAGAGTTGATTCTG ATGCAGAGTTGTTGCTATGATTGCATGTGTTAGTGGATTGCTAGTTGAATCTGTAAGTGCAAGGTAGTTAGTCTGTTCAT ATTCTGTTAAAACAGAACACATGACAGAACTCTATACAACTGCACGAGCTAGCATAAAACTACAAGAGCTGACTGAAGCT CAACACAGACACTTACTGCATTGCAGTACTTTAAATATAAAGTAGACACTCTGATAGGCTAGTTTTGCAGAAAAATAGTT GGAAATTTGGAGGATCTTGTTTGAGAATCAAATGTTAAAATGTGACAATTGTATGATAGTATTCTAAGTTAGTTGCTCTG GTAGTTAATTTTGTGAAAGATGACTATAGTGTGGTAGATAACTTGAAAATGTTTGATCCTGTTTTTATTTAAAAGGAAGT AAAATAGGTTTTCGTTTGATATTTGGTGATATGCAAATGCCATGGTTGCTGAAGTGTTGATGTCAATGTAGGTTGGTTGA AATGGGAGCTCTTCGAGGGAAATTTCTGAGAGAGTATCATCAAACATGGCGTCTTTTCACGTTTCCAATTTTGCACGCTG GACTGTTCCACCTGATCATCAATCTCTGCAGTGTGATCTTTGTGGGAATTCACCTCGAGCAGGAGTTTGGACCCTGTAAT CTTTTTCTTTTTCTCTGGGTTTCAAGTTTCTGTTTCAATTGTTTTTTACTGAAGTGATGTATAAGTTCATGTTGAAATGG TTTTGTGATGTTAAAATTTATGAACTCTACCTTTTATTTGCAGTGAGGATAGGTATAATCTACACACTGTCTGCTTTTGT GGGTGCCTTGGTGGCTGCTCTTTTTATCCAAAACACCCCAGCTGTTGGTTCTTCTGGTGCTTTGTTTGGATTACTGGGAA CATTACTTTCCCAACTTGTTTGGAACTGGAAATTTCTTACCAAAAGGGTGCTTTTTCTTTCCCTCATTTGTCTTTCTCTT TGTTTCTACTACTTGAGTATTGATGAAATTTTCATGTTTTGATGCAGAACTCAGCCATCGCATCATTTGTCTTTGTCTTC ATGTGCAATTTCCTTCTTGGCTTCCTGCCTTATGTGGACAACTTTTCAAACATTGGAGGTTTTATATCAGGATTCCTTCT TGGATCTGTTCTTTTGCTCAGCCCTCAGGTTCAACAAGTAGCTCCAAATAAAGGTGATCTCATTGATTATGGTATCACAA GTTACATGAAGTCAAAGTTGAAGCAAAAGCTAGACAGACCAGTTCTGTGGATTGTTTCTCTTATCCTCTTCAGCCTCTTG TATGCTGTTTTTACGCTTAGTTTTTCTTTCTTTTGTTTTGTTTAATATTCATGGCTAGCTGTTTTCTATCACACTCAGGT TTTTCGGCATGCCTCAAATCTTTGATGAGAAGCTTCTTCTGTATGCAGATTGAGTGGTTGTCTTGTAGCAGTTCTTCATG GAATCAACATCAGCAGTTATTGCCCATGGTGTCCATATGTTAACTGTATCCCTTTCTCAAGCTGGCACTGCAAAGAGAGA GAAACATATTGCGAGGTATACAGCTTATTTTGGCATTTCCTCAATTTAAAATACCCAACTAAGAATCTACTGCTAAGATG ATGAGTTATCTTGTACTATACATCCTTTGAACAATACAACTAGGACAAATATGAAATCTTTTTTTTTTTTGAAAACTAAG GCCAAGATATAATATAGCAACATATAAATATCTGTACACAATAATTATGAGTGTCCAATCTAAACTTACTTCATTCTCAT GTGGAGGGAAAGTAGTTGAATTGTTTTACATGCCATCCTTTATTATATTTTTAAGGATTCAATAATGTACCGGCTAAGAA TCACAACCAAGTAAAACTCTCAATTAGTTGAAGAAGATGGTGAGTCAGAGAGATGAAAAGCAACTTATTCAGCATAAGAA AGCATTCCATTTGGCCATGCCTCGTCTCTGCCAATACCCATAAGATCCAATGTAATAGAGAGAGTGGGAGATGATATATT CATGGCCTCATTATCTGATCCCTGGCAACAAACTTGATCCTTATACAGCAACACATTGATGGTAACACAAAATTTAGGAA CCCTCTTGGACAATCTCTGAGTCTTGGTGGGATTCTAGTTACCAACAATGACATCATGAGCTGAAGGTAGGTTCTTCTCA AGCGGAGTCGTCCACATTCAGATTGCTTCCTGGATGGTTTAGCAGAAAGTGGGCTGAAAGTAGCTTTGTATTTTAAGTAT TCTGGATGGTTTAGCAGATCCACCTTTTGGTCGGCAAAGTGAGAAAGCTTAGCTTTTAGCTCTGTAGTTAGAAAACTTTA CTACATATATATAAGATGTATTGTTTTTTTCCAAAACCAAAAATCAATTCAGAATAATATAAAATCTTGAAAGACAATCC TTCTTAAGGAGGATAAAAAAATCTGGTTAAACATAAAACACCTAAAACATGACACCCAAAAGCATAATACCCAACATATA AATAGAAATTCAATTGCATGACATTGAAATGTCTCCAAACAATTGAGATGCAACAATAGCACTACTCGAAGATGATAATT GAGATTTGAGCCATTAAAATAAGAGTTGTTAATATTTTATATTGGATCCCAAGGTGAGAATTTTAGTTCTGAAAAATAGA CGCATCACCCATGATTCAATATCAGCTCCACCAAATTATAAAGAATGTCAGAGTCTCATAAATCAAACCAAGATAGTTTC TATACTGATTAATCTTCAAAAGCCAACACCAATCCACAACTAAGAGGGTTAAAGCACCTAGGCACACAATTGAGATCAAT AGAAAGTCTTCAAGGGATAAAAGCAAAATCACACCTTCTAGTATCTTTTAAATCAAATTTTCCTAAAGGTATAAAAACCT GCTCCTGGAAAATGAGAAAAGAGACGTGACAATGACTCCTACAAAGACGGTGACCTTCATATTAACAATTACACTTTTTC TTACCCTCATGCTAAATCAATCTTTTGACAGTCTATCTAATTCTGCTAACCAAGACATATGCCTAACTTTTAGTTTTTTA CTATGAACAGAAGTAAATTGTTTGTTTGCTAACATTAACCACTTGGAAATCACTATGGAAAAATTGAAATAAAATATTAC AGAAAGGGAATGCCAACTTAGTACACAGATGTGCTCAATTGAAAATTTCCCCACTGTTAGTGTACCTGTTTTGGCAACTA GCCAGTTTAAACTTTAAAGTATTTCAACTTTGCTTCCACACTTTAAATGTTTCAACAATTAACTATTTACTATTTATCAG CACTCCATTTTATTGATTATTAAAGTCCCTGGGAATGCAATCTTTTAACTGGAAGTTATTAATTCCTGAAATGTGATGCT TCATGTTAATGCTGGTTATGTGCTATTGTGCTACAACTGCAGACAATGGTGAACAATGCTCATATGACAATGACCTGTAC TGGGAATGGCAACTTCAGGGTCTTTCCTTTTACCAACATCTCTCAGGCAAGGATCAATGATTTGTGCAACATGATATGCT GATGAACCAAGTTGCAGTTTCAATGATTCTTTTGCTGTAATCAAAGAAGCAGTACCGAATACACCCTTAGAAAGATCAGA AGTGATCAGAGCTGTAATTGTACGTACTTGTAAAGAACTCAAACGTAGCAATGGTATAATAATACAGTATGATGATAATG CTGCAGTTGTCATTGATCAAGAAGGATTTTCCCCAAATTACCAGGAAATGCTGGATAGCTGTAGATATATAGCTTCATAT CTTACCAGGTTGTCATATTCTTTTGTGCAAACTTAGAGATTCGAACTGAATTAGAAGCTTGAGCAGACTGGTCTGACACA ATTTGATGCATGAGTAAAGATAAAGATGAATACATTTCATCTTTGTAGAAAGTTGAATTTGTGAGAAAACAAAGTGATTT CGTTTCATATCTTGTCTATAA
CDS sequence (LotjaGi1g1v0248700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGGAAAGTTCCGAATTCATTGAAATGAACCTGTGGCCTCCTACGAAGTTCGCACCCGATCGTCCTCCCCAAGATCC GCCGGTGAAATCAATCCCGCGGCGGCGCCGAGTGGATACGTGGGTGGTGTCGGTGCTGGTAATCATCCAAATCGGTGTTT TCATCGCCACCATGCTCGTCAACGATTGCTGGACCAATTCTCACGGCGATTGTGCTCTCCCTGCTCTCGGAAGGCTCTCC TTCCAGCCTCTCTCCGAGAATCCCCTCTTAGGTCCTTCTCAGTCCAAGTTGGTTGAAATGGGAGCTCTTCGAGGGAAATT TCTGAGAGAGTATCATCAAACATGGCGTCTTTTCACGTTTCCAATTTTGCACGCTGGACTGTTCCACCTGATCATCAATC TCTGCAGTGTGATCTTTGTGGGAATTCACCTCGAGCAGGAGTTTGGACCCTTGAGGATAGGTATAATCTACACACTGTCT GCTTTTGTGGGTGCCTTGGTGGCTGCTCTTTTTATCCAAAACACCCCAGCTGTTGGTTCTTCTGGTGCTTTGTTTGGATT ACTGGGAACATTACTTTCCCAACTTGTTTGGAACTGGAAATTTCTTACCAAAAGGAACTCAGCCATCGCATCATTTGTCT TTGTCTTCATGTGCAATTTCCTTCTTGGCTTCCTGCCTTATGTGGACAACTTTTCAAACATTGGAGGTTTTATATCAGGA TTCCTTCTTGGATCTGTTCTTTTGCTCAGCCCTCAGGTTCAACAAGTAGCTCCAAATAAAGGTGATCTCATTGATTATGG TATCACAAGTTACATGAAGTCAAAGTTGAAGCAAAAGCTAGACAGACCAGTTCTGTGGATTGTTTCTCTTATCCTCTTCA GCCTCTTATTGAGTGGTTGTCTTGTAGCAGTTCTTCATGGAATCAACATCAGCAGTTATTGCCCATGGTGTCCATATGTT AACTGTATCCCTTTCTCAAGCTGGCACTGCAAAGAGAGAGAAACATATTGCGAGACAATGGTGAACAATGCTCATATGAC AATGACCTGTACTGGGAATGGCAACTTCAGGGTCTTTCCTTTTACCAACATCTCTCAGGCAAGGATCAATGATTTGTGCA ACATGATATGCTGA
Protein sequence (LotjaGi1g1v0248700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAESSEFIEMNLWPPTKFAPDRPPQDPPVKSIPRRRRVDTWVVSVLVIIQIGVFIATMLVNDCWTNSHGDCALPALGRLS FQPLSENPLLGPSQSKLVEMGALRGKFLREYHQTWRLFTFPILHAGLFHLIINLCSVIFVGIHLEQEFGPLRIGIIYTLS AFVGALVAALFIQNTPAVGSSGALFGLLGTLLSQLVWNWKFLTKRNSAIASFVFVFMCNFLLGFLPYVDNFSNIGGFISG FLLGSVLLLSPQVQQVAPNKGDLIDYGITSYMKSKLKQKLDRPVLWIVSLILFSLLLSGCLVAVLHGINISSYCPWCPYV NCIPFSSWHCKERETYCETMVNNAHMTMTCTGNGNFRVFPFTNISQARINDLCNMIC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 39 | 39 | - | – | |
| PANTHER | 29 | 372 | 344 | 5.0E-177 | – | |
| PANTHER | 29 | 372 | 344 | 5.0E-177 | ||
| SUPERFAMILY | 40 | 252 | 213 | 1.24E-36 | – | |
| Phobius | 40 | 60 | 21 | - | – | |
| TMHMM | 41 | 60 | 20 | - | – | |
| Phobius | 61 | 117 | 57 | - | – | |
| Gene3D | 87 | 255 | 169 | 3.7E-28 | ||
| Pfam | 110 | 250 | 141 | 1.3E-31 | ||
| Phobius | 118 | 142 | 25 | - | – | |
| TMHMM | 122 | 144 | 23 | - | – | |
| Phobius | 143 | 153 | 11 | - | – | |
| TMHMM | 151 | 173 | 23 | - | – | |
| Phobius | 154 | 172 | 19 | - | – | |
| Phobius | 173 | 177 | 5 | - | – | |
| CDD | 177 | 255 | 79 | 0.00136689 | – | |
| TMHMM | 177 | 199 | 23 | - | – | |
| Phobius | 178 | 197 | 20 | - | – | |
| Phobius | 198 | 208 | 11 | - | – | |
| TMHMM | 206 | 228 | 23 | - | – | |
| Phobius | 209 | 228 | 20 | - | – | |
| Phobius | 229 | 233 | 5 | - | – | |
| TMHMM | 233 | 250 | 18 | - | – | |
| Phobius | 234 | 250 | 17 | - | – | |
| Phobius | 251 | 283 | 33 | - | – | |
| TMHMM | 283 | 305 | 23 | - | – | |
| Phobius | 284 | 308 | 25 | - | – | |
| Phobius | 309 | 377 | 69 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Serine-type endopeptidase activity | Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine). | ||
| Biological process | Proteolysis | The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of LotjaGi1g1v0248700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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