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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0253100 |
| Transcript ID | LotjaGi1g1v0253100.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp|P19558|GAG_BIV29 Gag polyprotein; TrEMBL-Plants: tr|A0A151QYF6|A0A151QYF6_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0253100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:60697921..60702178) extracted from Lotus japonicus Gifu genome v1.2.
ATTCAATTCAATATACAGAAAATTTTCATCTTCTTCTTCAAGCTTCTTCAAGCTTTTCTCTGATTTCTTTGATGGTATCA GAGCCCTAGCAAAGGGTTCTGCCATCACAGCTTCCGCAACAATGGTGAATCGCAACAATCACAACAACAATCAAGTTCCT CAGGTGGTTCTCGATCCTTCACAGAACCCAGGATCTCCGTATTTCATTCATTCGAGTGATAATCCTTCTGCTACCATGGT GAATCCACCGTTGAATGGAAATAATTACAACGCTTGGGCGAGGTCGATGAAGCGTGCGCTCGTGGCGAAGAACAAGTTTC GTTTCGTCAATGGCGAAATTCCGGTGCCGACTGCAACTGATGCAAACTTTGAGGCATGGGATCGATGCAACAGTTTGATA CACTCTTGGATCCTCAATTCGGTAACAACTTCAATTGCAAATAGTATAGTATTTCTTGAAAATGCTTGTGATGCATGGAG AGAATTGAGAGATCGGTTTACACAAGGTGATTTAGTGAGAATTTCAGAATTGCATAGTGAGATTAGTAATCTGAAACAAA ATTCATTGTCAGTGAATGAATATTACACAGAATTGAAAATTCTTTTGGAAGAATTGGAGAATTATCGGCCAATACCACAG TGTAGATGTGCTGTTCCTTGTAGATGTGATGCAATTGAGAATGTAAAATTGTTCAGAGAGCAAGATAATGCAATCAGATT TCTCTTAGGGCTGAACGATAGTTTTGGAGTAGTGAAGTCTCAAATTTTGATGAGTTATCCTCTTCCATCTATTGCTAAGG TAGTATCCTTGGCAATACAACATGAGAGACAAACTGTTACAGAGGAAACAGGAGATTCATTAGCTATAGTGAATGCAGCA GATGGGAAGAAGCCATATGGTAGAGGAACATTTGCTAATTCCAATTACAAGAATACTGGAAAATTTTGCACTCATTGCAA GAAGCCAGGGCACACTATTGAAATATGTTACAGGTTACATGGCTATCCAACCACTTTTAACACCAGATATGGTGCACAGA GTTCTAGTCATGTCAACAATACTGGTAGAAGTTATGATTCTTCTGATGATCAAGAGGATGATGCTTATTCACAGAGAGCT ACTGAGGAGCCTTTCACTGCTGACCAGTACAAGAGGATAATTGCCATGATACAACAAGTTACTACAAGTCTACAACTCCA AAGAAAGCACCAGATAGTAACAATGCTTCTGTGAATCATGTGATAAAATCCACTGCCTATGAAGGAGAAACTACAAGACA TGGTAAACACTTTGCCTTATCTTGTTTTCAGCACTATGATAGTAGAGATTGGATTATAGATTTAGGGGCAAGTGATCATG TTTGTTTTGATAAAAATAATTTTGATGCACTATCTGAAATCAAACCTATTAGTGTTAAACTGCCAAATGGAGCTACTATC AGAACATGTTATGCAGGCAGTGTTAGAATCACAAAATCAATTTTGTTAACACATGTCTTGTTTGTGCCTGAATTCACTTA TAATTTAGTTTCAGTGCATAAATTAGCTAAAGGGCATAAATTTGATGTCATTTTTGGTGAATTTCACTGTTTTGTCCAGG ATGTTCAAACCAAGAGGAAGATTGGTTTGGGTAGTTTACAAGCAGATGAACTTTACCATCTAGTAGTTAGTAGTCCATCT AGTACTTGTTTTTCCATTCAGCATAGTCTTCCTGAAATAAGTGGCTTCAGTCACATCATACCACCTGGTGCTCTATGGCA CTTCAGGTTAGGACACCTATCTCATGATAGATTACTTGCTCTACATAATATAGATAGTTCTATAGATGTCAGTAAGTCTC TTGTCTGTGATATCTGCCACTTAGCCAAACAGAAAAGAAAGATGTTTTCAGTCAGCTATAGTCATGCACAGAGGTGTTTT GATCTTGTTCATATGGACATTTGGGGTCCTTTGGCTCAAGCTTCAGTCCACAACCACAAATACTTCCTCACTGTGCTAGA TGATTATAGTCGGTTTGTTTGGGTTGTGTTACTCCACAACAAGGGAGAGGTTCAGCAGCAGGTGAAGAACTTTGTAGCTT TGGTCAAAACTCAGTTTGGTCATTCTATAAAGACAATCAGAAGTGATAATGGGCCAGAATTTCTCCTCCCAGCTTACTAT TCTGCTCAGGGTATTATTCACCAAAGATCTTGTGTCTACACACCTCAGCAGAATGGGAGGGTTGAGAGGAAGCATCAACA TATTTTGAACATAGCCAGAGCACTATTGTTTCAGTCAAAGCTACCTAAAAGAATGTGGTCCTATGCAGTTCTACATGCAG TTTTTCTTATGAACATGATACCAAGTAGGCTACTGAAAAATAAATCACCTTATGAGCTACTGTATCAGGAGAAAGCAGAT CTGGGAATGATGAGAGTTTTTGGATCTCTTTGTTTTGCTAATACACTAGTAGCTAACAGGTCTAAGTTGGATCCTAGAGC CAGAAGGTGTGTTTTTCTGGGACATAAGCAGGGCACCAAGGGATTTGTGTTAATGGATCTTACATCACAAGAAATTTTTA TTTCTAGAGATGTCATATTTCATGAACATGTTTTGCCATATAAGAGTTCAAGCATGTCATCTTGGTCTTGTCTTGACCTT CAATCACAAGGTGAAACTGTCAATGAAAAAGGTGAAGGTATAGACACACAAGATGTTTCTACACCAGCAGAAAACACACA AAGTGAAGTCACAGCTACACCAACAGTTTTTGATACTAATCAGGGTGATGAAGTGGAAGTCACAACTACACCAGCAGTTT TTGATACTAACCAGGGTGATGAAGTGGTTATTGATCTACCTAATTCTGTGACTGATCAAACTCCTACATCAGTGAGAAAG TCCACTAGACCACTAAAGAGACCTGCTTATCTTGAAAGTTTTCAATATAATGCTTTGCCTACTCGCAGTAGCACAGCACA TAGTATCACTCATTACTATTCACATGATAAATTGTCCACTGCACACAAAGCCTATGCTCTGAACATATCCCTGGATCAAG AGCCCACTTCCTTTTCAGAGGCATCTAAGCATTTGCACTGGCAACAAGCAATGCAAGCAGAAATCAAGGCTCTTGAGAAG AATGAAACTTGGCAGATTGTGAACTTGCCTAAAGGAATAAAACCTATAGGTAACAAGTGGGTATATAGAATAAAGAGGAA TGCAGATGGAAGTCTAGCTAGATATAAAGCTAGACTAGTTGCAAAAGGGTACAATCAGATTGAAGGTCTGGATTATTTTG ACACATTTTCTCCAGTAGCAAAGATGACAACAATAAGAGTGGTTTTGGCTTTGGCTGCAGCACAAAACTGGCATCTACAT CAACTGGATGTAGATAATGCTTTCTTGCATGGCACACTAGATGAGGATGTTTACATGAGTATACCTGCAGGGGTCACTTC AGAGAAACCAAATCAGGCCTGCAAGTTATTAAAATCACTTTATGGGCTCAAGCAAGCCAGTAGAAAGTGGTATGAGAAGC TGTCATCACATTTGAAGGCTCTTGGGTTCACTCAAAAGCTTCTGACCATTCTCTCTTTGTTAAATTTCAAGACACAAATT TCACTGGTTTACTTGTCTATGTAGATGATGTGATTCTCTTTGGCAATACCATGACTGAGTTTCAATCAGTTAAGAATTCA CTTCATCAGGCATTTGGAATCAAAGATGTGGGAGTATTGAAATATTTTCTTGGTCTTGAAGTTGCACATTCAACCTCAGG AATTTCTCTTTGTTAGAGAAAATATTGTCTAGATTTACTTCAGGAGACAGGAACTTTGGGAAGTCAACCAGTTTCCACTC CTCTTGATCCTTCTATTAAGTTGAGTCTTACTCAAGGCAAACCATTTGATGATCCAGCAGCCTATAGAAGACTAGTAGGT AGATTGTTGTACCTTACTACTACTAGACCTGATATCTCATATGCTACACAGCAACTCAGTCAGTTCATGATTAATCCCAT GGATGTGCACTACAAAGCAGCACAAAGAGTCCTGAGTTACTTAAAAGGTTCACCAGGTTTAGGTCTCTTATTTCCGAGGA ATTCTCCCTTGAGTATTCAAGGATATTCAGATGCTGATTGGGCAGGGTGCTCAGATACAAGGAGATCAATTTCAGGGTAC TGTTTTTATCTTGGCAGATCCTTAATATCTTGGAAAGCAAAGAAACAAACCACTGTGTCTCGTTCCTCAAGTGAAGCAGA ATACAGGGCACTTGCTTA
CDS sequence (LotjaGi1g1v0253100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGAATCGCAACAATCACAACAACAATCAAGTTCCTCAGGTGGTTCTCGATCCTTCACAGAACCCAGGATCTCCGTA TTTCATTCATTCGAGTGATAATCCTTCTGCTACCATGGTGAATCCACCGTTGAATGGAAATAATTACAACGCTTGGGCGA GGTCGATGAAGCGTGCGCTCGTGGCGAAGAACAAGTTTCGTTTCGTCAATGGCGAAATTCCGGTGCCGACTGCAACTGAT GCAAACTTTGAGGCATGGGATCGATGCAACAGTTTGATACACTCTTGGATCCTCAATTCGGTAACAACTTCAATTGCAAA TAGTATAGTATTTCTTGAAAATGCTTGTGATGCATGGAGAGAATTGAGAGATCGGTTTACACAAGGTGATTTAGTGAGAA TTTCAGAATTGCATAGTGAGATTAGTAATCTGAAACAAAATTCATTGTCAGTGAATGAATATTACACAGAATTGAAAATT CTTTTGGAAGAATTGGAGAATTATCGGCCAATACCACAGTGTAGATGTGCTGTTCCTTGTAGATGTGATGCAATTGAGAA TGTAAAATTGTTCAGAGAGCAAGATAATGCAATCAGATTTCTCTTAGGGCTGAACGATAGTTTTGGAGTAGTGAAGTCTC AAATTTTGATGAGTTATCCTCTTCCATCTATTGCTAAGGTAGTATCCTTGGCAATACAACATGAGAGACAAACTGTTACA GAGGAAACAGGAGATTCATTAGCTATAGTGAATGCAGCAGATGGGAAGAAGCCATATGGTAGAGGAACATTTGCTAATTC CAATTACAAGAATACTGGAAAATTTTGCACTCATTGCAAGAAGCCAGGGCACACTATTGAAATATGTTACAGGTTACATG GCTATCCAACCACTTTTAACACCAGATATGGTGCACAGAGTTCTAGTCATGTCAACAATACTGGTAGAAGTTATGATTCT TCTGATGATCAAGAGGATGATGCTTATTCACAGAGAGCTACTGAGGAGCCTTTCACTGCTGACCAGTACAAGAGGATAAT TGCCATGATACAACAAGTTACTACAAGTCTACAACTCCAAAGAAAGCACCAGATAGTAACAATGCTTCTGTGA
Protein sequence (LotjaGi1g1v0253100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVNRNNHNNNQVPQVVLDPSQNPGSPYFIHSSDNPSATMVNPPLNGNNYNAWARSMKRALVAKNKFRFVNGEIPVPTATD ANFEAWDRCNSLIHSWILNSVTTSIANSIVFLENACDAWRELRDRFTQGDLVRISELHSEISNLKQNSLSVNEYYTELKI LLEELENYRPIPQCRCAVPCRCDAIENVKLFREQDNAIRFLLGLNDSFGVVKSQILMSYPLPSIAKVVSLAIQHERQTVT EETGDSLAIVNAADGKKPYGRGTFANSNYKNTGKFCTHCKKPGHTIEICYRLHGYPTTFNTRYGAQSSSHVNNTGRSYDS SDDQEDDAYSQRATEEPFTADQYKRIIAMIQQVTTSLQLQRKHQIVTMLL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | 30 | 76 | 47 | 4.6E-15 | ||
| PANTHER | 61 | 334 | 274 | 2.9E-67 | – | |
| PANTHER | 61 | 334 | 274 | 2.9E-67 | – | |
| Pfam | 93 | 194 | 102 | 8.0E-11 | ||
| MobiDBLite | 303 | 335 | 33 | - | – | |
| MobiDBLite | 303 | 318 | 16 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0253100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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