Transcript — View — Lotus Base

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LotjaGi1g1v0256300.1

Overview

Field	Value
Gene ID	LotjaGi1g1v0256300
Transcript ID	LotjaGi1g1v0256300.1
Lotus japonicus genome version	Gifu v1.2
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp\|Q7TN75\|PEG10_MOUSE Retrotransposon-derived protein PEG10; TrEMBL-Plants: tr\|A0A0S3SX19\|A0A0S3SX19_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0256300
Working Lj name	n.a.

Genomic sequence (LjG1.1_chr1:62044002..62046557) extracted from Lotus japonicus Gifu genome v1.2.

GTTTGTTAGTTTGTTAGCAGTTAGTTACAGTTAGTTAGAGTTTGTTAGAGTTCAGTTAGTTAGTTTTTCTTTATCTTTCA CTGATTAGGAACTTGTATAAAAACTGTAATCTTCAAGCATTGAATCTAAGAAGAATCATTCAATCAATTCATTGTTTCTA ACATGGTATCATGAGCTTTTAGCTTCCGCTTTCTCTCTTCGTCTCTGATTTTCTCGGGAAAATTCCTTTTCTGTTGGAAT TTTCTTGGTGACGGTTACCTATCTTTTTTTTTTTTTTTTCTTTTCTTCTCAGACATTTTCTCGAACACTTTCTTGGCATT CTCTTAGCTATTGTTTCTACTTTCTCAGATATTTTCTCAAGCTTCTTCTACTTTCTCAGAGATTTTCTCGAGCACTTTCT CGGCATTCTCTTTGCCGTTTCTTCACTTCTCTTCACTAATTCTTCTGCATAAAGCTTTGAAGCTTCTTCTACCTTCAACA ATGGCTCCGATTACTCGAGCAAATTTGACAGACTCGACTCACGATTACTACATTCATCCAAACGAAAATCCCTCACTTGT TCTCGTTTCTCCAGTTCTTGATGGGAGCAATTACCATGGCTGGGCTCGTGCAATGGCGATGTCATTGCAGATGAAGAATA AGTTTGGTTTCGCTGATGGTTCGATTGCAAAGCTCTCCGATGATGATCCTATGCTTTCAGCTTGGAAGCGCTGCAATAAT CTTGTGCTTTCGTGGATTAATCATTCGGTTTCTCCAGAGATAGCAACTAGCATCATCTGGATTGACACAGCTTCTGGAGC TTGGCAAGATCTGAAAGATCGTTTCTCGCAGGGAGATTCGGTAAGAATTTCTCACCTGCATCATGAATTGTATTCTCTAA ATCAAGGTGATTTGTCTATTACTGCTTACTACACCAAGATGAAGATTCTGTGGGATGAACTATGCAATTATCGGCCAATT CCTGTTTGTGTTTCCCCTCATGCGTGCTGTTGTGAGGCTGTGAAAATCTTCAAGCAATATAGGGAAAATGATTGTGTGCT GTGTTTCCTTAGAGGTTTGAATGATAATTTTGCTGCTGCTAGATCTCAGATTTTGTTGATGGAACCTTTGCCAACTTTGT CTAAGATTTTCTCTATGATAATACAACAAGAAAGACACTTAGGCATTGGAGTACTTCCTGAGCCAGCAGCTATGGCAGTT CATACTGGGAATACACAAGGCACATATTCTAATTCCAACAGGGGAAGGTCGAATTCTCAGTATTCTTCAAGTAAATCCAA TGTGCAGAGGTTGTGCACACACTGTGGAAGGCAGAATCACACTGTTGAAACATGCTTCCTTAAGCATGGCTATCCTTCCA ACTTTCCAAATGGTTATAAGCCAAAGAAGGCTTACATTACAACTTCAGGAGGTGATTCACATTCTTCTTCAGATCAAGAT GAACCTCCTTCTTCAAGTCTTGAGCAGACAAGAGAGCAACTTCAAGGTTTACTGGCATTACTTCCTCAATCTAAGCCCAC TACAGTTTCACAAGCCCCCAACCTTAAGCCTATTGCTGCTTCCAACCTTGTCAGTAGTCACAATGTTATTGCTAATAACA TAGGTATGGTCAATTCTCAATGGATCATGGATTCAGGTGCCACTGATCACATTGCTTCTTCCTTATCTTTCTTTTCTTCT TACTAATCAATCAAACCTGTACCTGTATCTTTGCCTAATGGAGCTCATGCTATTGCAAACCATTTAGGGACAGTATTTCT TTCACCTACCCTGACTTTACATAATGTTCTCTATGTACCTGAATTTTCTGTCAATCTTGTTTCTATACACAAGCTTACCA AAGTACTAAATCACAAATTGATTTTCACTGATTCCTTGTGTTTGATTCAGGACAAGACCACTTTGAAGATGATTGGGAGA GCTGAGATCAAGGATGGGCTATACATCATGGAGCTTCCACCTATTACTAGTTTCAAACCACTTCATACTTTCCATTCTGT AAACATGAGTATTGTTTCTTCTTCTAATAAGTTGCCAAATATATGGCATCATAGGTTAGGACATCCATCTCAGCCTTGTT ATATTTCTTTGCAACAAATGTACCCTGCTATTACTACTTCTCCATGTAAGAATTGTGATACTTGTCATTTTGCTAAACAA AAAAGATTATCTTTTTCTTTGAGCCATACTATTTCTGGAACTGTTTTGGAATTGTTGCATGTAGATATTTGGGGACCATA CAGTGTTGCATCTATTACAGGAGCCAAATATTTCCTCACAATTGTAGATGATAAGTCTAGGTTTACTTGGATAAAATAAT GAAAGCAAAATCAGAGGCTCGGGCTGCATTACAAACTTTTATCCTTTATGCACAGAGACAGTATGGATCTCTTGTTAAAA TAGTGAGATCAGATAATGGGGTTGAATTTGCCATGACTGATTTTTATTCACAGCATGGAATTCAACACCAATTATCTTGT GTTGAAACTCCACAACAAAATGGTGTTGTGGAGAGAAAACATCAGCACATCCTGAATATTGCTAGGGCTCTTATGC

Download Genomic Sequence

CDS sequence (LotjaGi1g1v0256300.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCTCCGATTACTCGAGCAAATTTGACAGACTCGACTCACGATTACTACATTCATCCAAACGAAAATCCCTCACTTGT TCTCGTTTCTCCAGTTCTTGATGGGAGCAATTACCATGGCTGGGCTCGTGCAATGGCGATGTCATTGCAGATGAAGAATA AGTTTGGTTTCGCTGATGGTTCGATTGCAAAGCTCTCCGATGATGATCCTATGCTTTCAGCTTGGAAGCGCTGCAATAAT CTTGTGCTTTCGTGGATTAATCATTCGGTTTCTCCAGAGATAGCAACTAGCATCATCTGGATTGACACAGCTTCTGGAGC TTGGCAAGATCTGAAAGATCGTTTCTCGCAGGGAGATTCGGTAAGAATTTCTCACCTGCATCATGAATTGTATTCTCTAA ATCAAGGTGATTTGTCTATTACTGCTTACTACACCAAGATGAAGATTCTGTGGGATGAACTATGCAATTATCGGCCAATT CCTGTTTGTGTTTCCCCTCATGCGTGCTGTTGTGAGGCTGTGAAAATCTTCAAGCAATATAGGGAAAATGATTGTGTGCT GTGTTTCCTTAGAGGTTTGAATGATAATTTTGCTGCTGCTAGATCTCAGATTTTGTTGATGGAACCTTTGCCAACTTTGT CTAAGATTTTCTCTATGATAATACAACAAGAAAGACACTTAGGCATTGGAGTACTTCCTGAGCCAGCAGCTATGGCAGTT CATACTGGGAATACACAAGGCACATATTCTAATTCCAACAGGGGAAGGTCGAATTCTCAGTATTCTTCAAGTAAATCCAA TGTGCAGAGGTTGTGCACACACTGTGGAAGGCAGAATCACACTGTTGAAACATGCTTCCTTAAGCATGGCTATCCTTCCA ACTTTCCAAATGGTTATAAGCCAAAGAAGGCTTACATTACAACTTCAGGAGGTGATTCACATTCTTCTTCAGATCAAGAT GAACCTCCTTCTTCAAGTCTTGAGCAGACAAGAGAGCAACTTCAAGGTTTACTGGCATTACTTCCTCAATCTAAGCCCAC TACAGTTTCACAAGCCCCCAACCTTAAGCCTATTGCTGCTTCCAACCTTGTCAGTAGTCACAATGTTATTGCTAATAACA TAGGACAAGACCACTTTGAAGATGATTGGGAGAGCTGA

Download CDS Sequence

Protein sequence (LotjaGi1g1v0256300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAPITRANLTDSTHDYYIHPNENPSLVLVSPVLDGSNYHGWARAMAMSLQMKNKFGFADGSIAKLSDDDPMLSAWKRCNN LVLSWINHSVSPEIATSIIWIDTASGAWQDLKDRFSQGDSVRISHLHHELYSLNQGDLSITAYYTKMKILWDELCNYRPI PVCVSPHACCCEAVKIFKQYRENDCVLCFLRGLNDNFAAARSQILLMEPLPTLSKIFSMIIQQERHLGIGVLPEPAAMAV HTGNTQGTYSNSNRGRSNSQYSSSKSNVQRLCTHCGRQNHTVETCFLKHGYPSNFPNGYKPKKAYITTSGGDSHSSSDQD EPPSSSLEQTREQLQGLLALLPQSKPTTVSQAPNLKPIAASNLVSSHNVIANNIGQDHFEDDWES

Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Prediction algorithm	Identifier	Start	End	Length	E-value	InterPro ID
Pfam	PF14244 View details on PF14244 Search for proteins/transripts with this domain View external data on PF14244	19	64	46	9.1E-16	IPR029472 Show description in modal box View details on IPR029472 Search for proteins/transripts with this domain View on EBI InterPro Service
PANTHER	PTHR34222:SF5 View details on PTHR34222:SF5 Search for proteins/transripts with this domain View external data on PTHR34222:SF5	51	320	270	2.3E-78	–
PANTHER	PTHR34222 View details on PTHR34222 Search for proteins/transripts with this domain View external data on PTHR34222	51	320	270	2.3E-78	–
Pfam	PF03732 View details on PF03732 Search for proteins/transripts with this domain View external data on PF03732	83	156	74	1.6E-8	IPR005162 Show description in modal box View details on IPR005162 Search for proteins/transripts with this domain View on EBI InterPro Service
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	242	263	22	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	302	330	29	-	–
MobiDBLite	mobidb-lite View details on mobidb-lite Search for proteins/transripts with this domain	308	330	23	-	–

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on April 27, 2020, while the GO metadata was last updated on April 27, 2020.

Unable to find any GO terms for the transcript with the identifier.

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0256300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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