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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0259900 |
| Transcript ID | LotjaGi1g1v0259900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein; TAIR: AT4G28010.1 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9SUD8|PP340_ARATH Pentatricopeptide repeat-containing protein At4g28010; TrEMBL-Plants: tr|G7L6K3|G7L6K3_MEDTR TCP-1/cpn60 chaperonin family protein; Found in the gene: LotjaGi1g1v0259900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:62977075..62982321) extracted from Lotus japonicus Gifu genome v1.2.
AGAAAAAATGAACTGAAATTGGTTCCCTCCTCTATTCGTTTCTCTACCCTTATGCAAACACGACACATCCCAGCCAGCCA CCGAAATCTCACCAGCAGAACAATGAAACCAAAACGCATCCTTGTCCCTCCTCGTACCATGTTCTCTGCTTCTTCTTCTT CTTCTTCAACGCCCCATGTAGAATTCCAGCGTAACAAACCCAATCCTCCTCTGTTGCTTTCTGTAGCCGTTTCTCTCTTT CAGGACCCTGATTCATTGCCCTCAGTATCAGCCTGCAACTCCCTCATAGACAACCTGCGAAAGGCAAGACAACATGACCT ACTCTTGTCGGTTTATTCCAAGATGGCACGCGCTTCTTCTGTTTTGCCTAGTTTTACTTCCCTCAGTGCTTTAATTGAGA GTTTTGTCAACACCCACAAGCCAAAATCGGCTTTTGGGGTCCTGGGCTTGATGTTAAAGCGTGGTTTTGACGTTAATGTG TATAATTCCAACCTTGTGTTGAAGGGTTTTTCTCAAACTCGTGATAATTGTGACAAGGCCATGGTTTTGTTTTGCCAAAT GAAGAGGAATTGTGTTTTGCCTGATACCTTTAGTTACAATACTCATATAAATGGACTTTGTAAAGCTAAGAGATTGGTAG AAGCTAGGGGGTTGTTTGAGGACATGAAGGCCGGGGAATTCCCTCCCAACTTGGTCACGTTTAGTACTTTGATTGATGGT CTTTGTAAGAATGGAGCAGTTGATGAGGGTCTGGATTTGTTGGAGGAGATGAGGAAGAAGGGTTTGGATGCAGATGTTTT TCTCTATAGTTCTCTCATTAGTGCCTTTTGCAGCATAGGTGACACTGAGAGGGGAAAGCAACTCTTTAATGAGATGTTGG AAAAAAATGTTACTCCTAACGTGGTTACTTATAGCTGTTTCATGAAAGCTCTTTGCAAGGATGGGAAGTGGGAAGAAGCC TCCAAAATGTTGAATGATATGACGACTCGGGGAGTTCATCCTGATGTTGTTGCTTATACAACTTTAGCTGATGGGCTAGG CAAAAATGGGAGGGCATCAGATGCAATGAAAGTATTGGATTTGATGCTGCAAAAGGGGGAAGAGCCGAATACTGTAACAT ACAATGCCATCATAAATGGACTTTGTAAGGAAGGTCGGGTTGATGATGCACTTGGGATTTTAAAAATGATGGCGAAGAAG GGGAAGAAACCGGATGCCATTACCTACAACACCTTATTGAGAGGACTTTGTGGAGTTGGCCAAATTGAGGAGGCAATAGA CCTTTTGACGCTGTTATTGAGCAAGGAGTTCCATATCAAGCCTGATGTCTTCACATTTAATTTTCTTATTCAGGGGCTTT GCAAGGAACGGCGTCTTCGTGATGCCGTAAAGGTCCATTCTACAATGGTTCAAATGGGGTTCCCTGGTAACTTAGTGACT TACAATAGTTTGATTGAGGGTTATCTAAATGTTGGAAAACTTACTAAGGCATTGGAGCTATGGAAATGTGCAGTAGACTT AGGATTTTCCCCCGACTCAATGACCTATAGTGTCATGATCAATGGTCTTTGCAAAATGCAGATGCTAAGTATTGCAAAAG GACTTTTCAATAAAAGTAGAGCTTGTGGGGTTAGACCTGGAGTAAATGATTACAATGCACTGATGACATCCCTGTGCAGG GAAGGTAGTTTAGAGCAGGCTAGGAATTTATTTCGAGAAATGAGAAATATGAATCATGATCCTTCTCCCATTCCTTCTTC TCAGAAGCATCAATATCAGCACACTTTTTAGTAAGGTGCTCGGACAAACCTTGACCCAAAAACCAGATCTCAACAGCATT GGACCAATCTAGATAATTTGCCTCATTCAACTTCTCAGAAGTGATAACAGGAGTCCCAGAAAAAGCAAATGAGATGAGAC TCTTCTTCTCACCCTTGGGAGACTTATCCTTCAGCAAATCCTCCATGAAGAAAAAGAACAAACAGAGACAGGGAAAACAA CCGCAACCAAACAAATCCAAACACACTTCAAACGAAAGGCTCACTGACTGGAACAGGCCAAAAAACAGAAACAAGAGACC TCAAACACAGAAACGAACCACAGAAGAGGAATCCTGGAATAAAAACAAGCAAACCCAGAAAAATTGTCAGCGGCGACCGG CGGCGACGGCAGCGGCTGGCGGTGGCGGTGGCGGCTGATCACGACACAGTGGTGGCAGCAGCGGACTATGGTAGCAGCAG CCAACAGCAGTGGTGGCGGCCGGTGGTTGCTTCCGGAATTCTAACTGGTAAAAATAAGGGTTAGCCTACGATGGCTGAAA CCCTAAACTAAACTAGTAAACCAGAGGGAGACTTGAATCAGAAAGCTCTGATACCAACTTGAATGAAATATTCTGATTGA TTATTCCATGAAGCTGAGTACATATATATATACAAGAGTTTAGGGATAGCTAAATAAGGAAAAGATCTATCCTAATAAAA GATAAAATATACTAAATATATTTATTCCCTATTTATTTTATCTACATATCTCAACACAAAGTATAGGGATTCACTGACTC TTCTTGGGATTCCTGTATTGACACTTGAATTTTTGTTACCAACTTCTGTTTCTACCCATGCTCAACTCTCATTGCATGGA AGAGCAAGAAACAACCTACTGTGTCCAAGTCTTCCTCTGATGCTAAATACCGAGCTTTGGCACAAGCCACAAGTGAAGCT CAATGGCTTGTTTACTTGCTGGCAGATTTCAAAATCACATGTCTTTTGTTATCATCTATTGTGATAACCAACCTTTTATT CACATTTCCACTAACTCAGTTTTTCATGAATGGACAAAACACAGAGAGTTGGATTGCCACATAGTTCGGGAAAAGATTCA GAATGGTTCGTTACTTCTCCTTCAGTTCTTCCCATTTTTACCAAGACTCTTAGACCTGGTCCTTTTCAGCTTTTATGTTC CAAGCTTGAAATGTATGATATACCTTCCAGCTTGAGGGGGGGGGGTGTGAATGATAGAACTCGGCCCAATCTGATATTAT TTAACGGTAAACCCCTAATTCCCAAATAGGAATTGGGGAAAGGATACAAGGAAAGGATCCCAAACACCCTCCCAAGAACC AGAGAGACCCAACGCTCTCTAAACCCTAATTCCAAAGTGAAAACAAAGATAACCTAATGCTCTCTAATCACTCTTATTTA TAGGCAACATGCCTCTTAACCCTATAACTAACAAACTACTGACCCCACTTAACTACTAACTAGCTAACCCCGGTTACCTA TCAGTGAATTAGTAAGATCAATTAGTTTTTAGAAGCTTATGAAGTTTGTTTCTAATGAGCTGTTAGTTGCTATTAGTTTT CCTGTTATTAGAAGTTAGATAATGCTGTTAACACTTCTATATAACAGATTTATGTAACTCTTTTCTAACTCAATAAAAAA TACAATTTCCTCTTCTATTCTATACTGATTCCTCTGCACATTTTCATCCTAGGTGTGTGTGTGTGTGTGTATTGGCTTGT TTTAGTAACCACTCATATAATAGATAATTTCTCAGAACTCGTTTGTGATTTCTTTCATTGCAGCAGCAGATTAACTGATT GCAGACATGGACATCAAGTATAATAGATGGAAGAACATTACAGCAGTAATGTTAGGTACTATAAACAATGAGACGTTTTT TAAAGCCCGTAGCGTTTCCGTGGTTCTCGATGAACTTCGGAAATGGAATGAAAATGCATATGTGCCAAAAGTGATCTCCA TCGGCCCCCGATACAATGGGAGACAGGAACTGCTACCCATGGAAGAGATAAACTGGCGTTGTATGTTTCATCTTTTTAAC CGATCACTGGGATATACTATAAGTCCAGACAAATATGTAAATAATTGCATGGATACAATTTTGAAGATGGATGTAGCAGT TCGTTCAAGCTATTTGGGAGAAATAGAACTCGACAGGTACGATTTGGCTGCAATTGTGTTTAATGATGGTTGTTTTTTGT TAGAGTTTCTCATCTCTGGATCAAGCATAGATTCAGTAATACCACCCTTCGGAGGAAGGATTAGTGCTATTGGTCCTAAC CCGGCACTTGAAATTGGAAAAATGGAAGTGGTCATGAGAGATCATACATTGTTGGAGAACCAGATACCACTTTTTGTTCT TGGTGTGTTGTTTCAAAATATTTTTGATAAAGGCTTTCATTATTTGGTTCATGAAATACATAACCGGGCTTTGTCTCTCT TTGGCTTCCATGGGGATTTGAAGTCGGTTGATTCCAAATTTGCTCATTTTCTTGAACTTGCTTCCTGGAACATTAACAAG GAGTGAGAGGGACTACAGATGGTGGATAATAAAGAAACCCAATCTGAGTCCAATCTTGTCAATATCAATGAACAAGTTAA GTATCAATGCCTGAATCTTTGTGCTACTAAGCTCAAAGCCTATGGGGTTACAATCAAACCTCCTGCACAAGTTAGCACCT TGAAATTCGGCATGAAATTCAGCGATGGTACACTAGAAATTCCGCAGGTGCATATTACACGAGCAATGAAATCAAAGTGG CTGAATTTAATTGCTTGGGAACATCACAAGAAATGGATAAAACCAAAGAGTTATTCGGATACCGACAATGAAAATCAACA CTGGCGCGTAGCTACTTCTTCTGCATTGCTTATCAATGACTTGATATGTTGCTCAAGTGATGTTCAACTTCTCAAAGATA GTAAAGTTATTGAATTGGATGATGATTTGAACATGAACAATCGAGATTTGATGGTTGTTTTACACTCACTGACTATGGGA GTAGATCGTGGCATAATTGATCCCATATATAGCAGCAACTTTGATGCATTGCTTCGATTATACCTATTTGCACAAATGCC TCGACGATTTCCGCTCGTTAATATGTAAACTCCAATGAGCATATCTTGAGTTGGTACGGCAATGGGATATATTCGGCTGC AAACTGCAACACAAGAATCCCTATACTGCTTTGGCATTACTTTAGCCGAGTTTTTAATTGGTTTTACACCTTTCGGAAAT TTCTTGGGCAGGGTTACAACTTTGCTGCTACAGCAGTGACTTTACTCACTGTTGTACAAACTGTTTATGCAATCCTCAGC TATCATTTTCCCAAGTCCTAGGCCCGGTGCTTCTTGCTGAAGCACAAATTGAAAAGCTCCTTTCTAGAGAAGTTATTTTG TGTTTGGATGTAAATATAAACCAGTCCTTATTTAAATTGAAAGTGTG
CDS sequence (LotjaGi1g1v0259900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAAACACGACACATCCCAGCCAGCCACCGAAATCTCACCAGCAGAACAATGAAACCAAAACGCATCCTTGTCCCTCC TCGTACCATGTTCTCTGCTTCTTCTTCTTCTTCTTCAACGCCCCATGTAGAATTCCAGCGTAACAAACCCAATCCTCCTC TGTTGCTTTCTGTAGCCGTTTCTCTCTTTCAGGACCCTGATTCATTGCCCTCAGTATCAGCCTGCAACTCCCTCATAGAC AACCTGCGAAAGGCAAGACAACATGACCTACTCTTGTCGGTTTATTCCAAGATGGCACGCGCTTCTTCTGTTTTGCCTAG TTTTACTTCCCTCAGTGCTTTAATTGAGAGTTTTGTCAACACCCACAAGCCAAAATCGGCTTTTGGGGTCCTGGGCTTGA TGTTAAAGCGTGGTTTTGACGTTAATGTGTATAATTCCAACCTTGTGTTGAAGGGTTTTTCTCAAACTCGTGATAATTGT GACAAGGCCATGGTTTTGTTTTGCCAAATGAAGAGGAATTGTGTTTTGCCTGATACCTTTAGTTACAATACTCATATAAA TGGACTTTGTAAAGCTAAGAGATTGGTAGAAGCTAGGGGGTTGTTTGAGGACATGAAGGCCGGGGAATTCCCTCCCAACT TGGTCACGTTTAGTACTTTGATTGATGGTCTTTGTAAGAATGGAGCAGTTGATGAGGGTCTGGATTTGTTGGAGGAGATG AGGAAGAAGGGTTTGGATGCAGATGTTTTTCTCTATAGTTCTCTCATTAGTGCCTTTTGCAGCATAGGTGACACTGAGAG GGGAAAGCAACTCTTTAATGAGATGTTGGAAAAAAATGTTACTCCTAACGTGGTTACTTATAGCTGTTTCATGAAAGCTC TTTGCAAGGATGGGAAGTGGGAAGAAGCCTCCAAAATGTTGAATGATATGACGACTCGGGGAGTTCATCCTGATGTTGTT GCTTATACAACTTTAGCTGATGGGCTAGGCAAAAATGGGAGGGCATCAGATGCAATGAAAGTATTGGATTTGATGCTGCA AAAGGGGGAAGAGCCGAATACTGTAACATACAATGCCATCATAAATGGACTTTGTAAGGAAGGTCGGGTTGATGATGCAC TTGGGATTTTAAAAATGATGGCGAAGAAGGGGAAGAAACCGGATGCCATTACCTACAACACCTTATTGAGAGGACTTTGT GGAGTTGGCCAAATTGAGGAGGCAATAGACCTTTTGACGCTGTTATTGAGCAAGGAGTTCCATATCAAGCCTGATGTCTT CACATTTAATTTTCTTATTCAGGGGCTTTGCAAGGAACGGCGTCTTCGTGATGCCGTAAAGGTCCATTCTACAATGGTTC AAATGGGGTTCCCTGGTAACTTAGTGACTTACAATAGTTTGATTGAGGGTTATCTAAATGTTGGAAAACTTACTAAGGCA TTGGAGCTATGGAAATGTGCAGTAGACTTAGGATTTTCCCCCGACTCAATGACCTATAGTGTCATGATCAATGGTCTTTG CAAAATGCAGATGCTAAGTATTGCAAAAGGACTTTTCAATAAAAGTAGAGCTTGTGGGGTTAGACCTGGAGTAAATGATT ACAATGCACTGATGACATCCCTGTGCAGGGAAGGTAGTTTAGAGCAGGCTAGGAATTTATTTCGAGAAATGAGAAATATG AATCATGATCCTTCTCCCATTCCTTCTTCTCAGAAGCATCAATATCAGCACACTTTTTAG
Protein sequence (LotjaGi1g1v0259900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQTRHIPASHRNLTSRTMKPKRILVPPRTMFSASSSSSSTPHVEFQRNKPNPPLLLSVAVSLFQDPDSLPSVSACNSLID NLRKARQHDLLLSVYSKMARASSVLPSFTSLSALIESFVNTHKPKSAFGVLGLMLKRGFDVNVYNSNLVLKGFSQTRDNC DKAMVLFCQMKRNCVLPDTFSYNTHINGLCKAKRLVEARGLFEDMKAGEFPPNLVTFSTLIDGLCKNGAVDEGLDLLEEM RKKGLDADVFLYSSLISAFCSIGDTERGKQLFNEMLEKNVTPNVVTYSCFMKALCKDGKWEEASKMLNDMTTRGVHPDVV AYTTLADGLGKNGRASDAMKVLDLMLQKGEEPNTVTYNAIINGLCKEGRVDDALGILKMMAKKGKKPDAITYNTLLRGLC GVGQIEEAIDLLTLLLSKEFHIKPDVFTFNFLIQGLCKERRLRDAVKVHSTMVQMGFPGNLVTYNSLIEGYLNVGKLTKA LELWKCAVDLGFSPDSMTYSVMINGLCKMQMLSIAKGLFNKSRACGVRPGVNDYNALMTSLCREGSLEQARNLFREMRNM NHDPSPIPSSQKHQYQHTF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 55 | 156 | 102 | 1.5E-11 | ||
| PANTHER | 56 | 279 | 224 | 3.1E-124 | – | |
| PANTHER | 56 | 279 | 224 | 3.1E-124 | – | |
| ProSiteProfiles | 71 | 105 | 35 | 7.191 | ||
| ProSiteProfiles | 107 | 141 | 35 | 7.366 | ||
| Pfam | 110 | 139 | 30 | 0.83 | ||
| ProSiteProfiles | 142 | 177 | 36 | 8.276 | ||
| Gene3D | 157 | 272 | 116 | 2.1E-34 | ||
| Pfam | 177 | 226 | 50 | 1.6E-16 | ||
| ProSiteProfiles | 178 | 212 | 35 | 11.86 | ||
| TIGRFAM | 180 | 213 | 34 | 5.0E-7 | ||
| SUPERFAMILY | 181 | 411 | 231 | 2.47E-7 | ||
| ProSiteProfiles | 213 | 247 | 35 | 13.055 | ||
| TIGRFAM | 215 | 248 | 34 | 2.3E-8 | ||
| Pfam | 243 | 275 | 33 | 3.4E-7 | ||
| PANTHER | 248 | 418 | 171 | 3.1E-124 | – | |
| ProSiteProfiles | 248 | 282 | 35 | 12.606 | ||
| PANTHER | 248 | 418 | 171 | 3.1E-124 | – | |
| TIGRFAM | 251 | 284 | 34 | 7.0E-8 | ||
| Gene3D | 275 | 345 | 71 | 2.1E-21 | ||
| Pfam | 282 | 330 | 49 | 9.5E-16 | ||
| ProSiteProfiles | 283 | 317 | 35 | 13.055 | ||
| TIGRFAM | 285 | 319 | 35 | 1.1E-9 | ||
| ProSiteProfiles | 318 | 352 | 35 | 11.816 | ||
| TIGRFAM | 320 | 354 | 35 | 1.4E-7 | ||
| Gene3D | 346 | 417 | 72 | 8.3E-23 | ||
| Pfam | 352 | 400 | 49 | 1.2E-18 | ||
| ProSiteProfiles | 353 | 387 | 35 | 13.888 | ||
| TIGRFAM | 355 | 389 | 35 | 2.3E-10 | ||
| SUPERFAMILY | 365 | 563 | 199 | 6.54E-9 | – | |
| PANTHER | 376 | 503 | 128 | 3.1E-124 | – | |
| PANTHER | 376 | 503 | 128 | 3.1E-124 | – | |
| ProSiteProfiles | 388 | 422 | 35 | 10.523 | ||
| TIGRFAM | 390 | 420 | 31 | 6.7E-6 | ||
| Gene3D | 418 | 576 | 159 | 1.3E-37 | ||
| Pfam | 421 | 452 | 32 | 2.3E-10 | ||
| ProSiteProfiles | 425 | 459 | 35 | 11.444 | ||
| TIGRFAM | 427 | 459 | 33 | 2.0E-5 | ||
| Pfam | 460 | 508 | 49 | 4.1E-14 | ||
| ProSiteProfiles | 460 | 494 | 35 | 11.531 | ||
| TIGRFAM | 462 | 495 | 34 | 1.5E-5 | ||
| PANTHER | 490 | 564 | 75 | 3.1E-124 | – | |
| PANTHER | 490 | 564 | 75 | 3.1E-124 | – | |
| ProSiteProfiles | 495 | 529 | 35 | 10.731 | ||
| TIGRFAM | 498 | 530 | 33 | 1.2E-4 | ||
| Pfam | 526 | 558 | 33 | 6.4E-7 | ||
| ProSiteProfiles | 530 | 564 | 35 | 11.553 | ||
| TIGRFAM | 534 | 565 | 32 | 2.0E-7 | ||
| MobiDBLite | 559 | 579 | 21 | - | – | |
| MobiDBLite | 563 | 579 | 17 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0259900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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