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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0264500 |
| Transcript ID | LotjaGi1g1v0264500.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Metal transporter, putative; TAIR: AT1G15960.1 NRAMP metal ion transporter 6; Swiss-Prot: sp|Q8H4H5|NRAM5_ORYSJ Metal transporter Nramp5; TrEMBL-Plants: tr|G7J4Z1|G7J4Z1_MEDTR NRAMP metal ion transporter 6; Found in the gene: LotjaGi1g1v0264500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:64712108..64717023) extracted from Lotus japonicus Gifu genome v1.2.
CAAATCACGAGGTATTTTTCCTTCTTTCTCTATGTGGGTTTCTTTTTTAATGTTTTTTTTTTTCCATTCAAGTTCTTGAG TCAGGTGTAACCCACTTGATTTAAAGTTTTCCAGCTAGTTTTAGCAATTCAATGACTCTTAGCTTGATCCATTTAATATG TGTATATTAATATATGTGTTTATAAACAACCAACTATATATCTCACAAAGGCTTATCAAAAAATATATCTCACAAAGTTT AAGCTTTCTTGATATCATGATTTCTAACAGAAATTAACTTATGCAAAATGACACAGAAACCATGGAGAAAGTTCTTGACA CATGTAGGTCCTGGTTTCCTGGTCTCCTTGGCTTACCTTGATCCTGGGAACAGTAACTCTCTCTCTCTCTCTCTCTCTCT CTTCTGTATCTCTTTATATATATTCGTCTTGATCACTCTCTTGCACGTGCTTAATCGCTAAGTTATTTTACATTTTTGCA GTGGAAACTGATATGCAAGCTGGAGCTAACCACAGATATGAGGTATAGTAATTGACAAATAAACCAATAAAACAAATCAA ACCATTTGAATAAATAGATGCACACCAAAAATACTACTGTATTTTTCTTTTGTCAACCCAAAATGCTACTTTATTTAAGT TTTTGTTACTTGGAAGCGAGTGTAGGTTGGGTTACTTGTGAGTGTAGTGTGGTCCCAAATGTTTAAAACTATTGAACTTA TCACATCTAACCTTATGTACCATTGTTGTCTCCTATGAAGTATCCAATGGGACTTTGTTTGTTTCAAAATGTAACTAGAC TAATTAAGTTAAACTTATTTGGTTTGCACTTGTATTCAAGGGTAATTTTAAAGACCATCTATGAACATGTTCTCTTTTCT GTCTAAATTTGAGTCTCGGTAACACATGACTAATTATCATATTAGTGGCTATTGTTTTTTTGAAATTTACTCTTTATTGA TTAATAAGCGCAGGCTCTGCAAAGAGGGATACAAGGGAAGTAGCATCTTATCATATTAGTTGTTTTTTTGAATATTAATT TATCTTTTTTCTCTCTCTTCATTGAGCCCTTTTCCTTGTAACTTTTATTTTTCAGGCTTTTTTCTTTCTTTTTAAATCAT AGGTTGAGGTCTTTTGGTGTTTTTTTTTGTCAATAGTTCTTTTGGGTTTTGATAGTGCTTGTTGGCCACTTGGCCTAGGC AGAAATGGATCTTTATATCCGAGAGTGTGTTGGGTTAGATGTGATAGCTTAGTCCAAAATGTGTAAGTAGTTTTTTCTAA ATAATCTGTTTCAGTTTTTGTTAAATAATCATTTTTTAAAAAAGTGGAAATAATATGGGTTGGGTATGGGAGGTCCAGGG ATCGATTCCTGGCGGGTGCAATTTATCTTTCCGATTTTTTTTTTAAAAACTTCTTTTTTAATTAAAAATAATTTTTTTTA TATAAAAAACCTGAAACAAACGCACTCATTATGGTGTTCCTGGTGTTCAGCTGCTCTGGTTGGTACTCATTGGACTGATA TTTGCGCTTATAATTCAGTCATTGGCTGCAAATCTCGGTGTAATCACTGGTAAGATCCAAAACAACACAGTAATGCATGA AAAATGTTCAAATAACACAAAATTCACATATGTTATATATGCATGTATGATTGTATATGTTATTTGTTTGTTATTTTCTT TGCGAGAATATTATTAATGTTATTTGAATTTGGCAGGGAAACACCTTTCAGAAATATGTAAAGCAGAGTACCCATTATTT GTTAAGTACTGCTTGTGGTTATTAGCAGAGGTTGCTGTCATAGCTGCAGACATACCTGAAGGTACTTATTTGTTTTCAAT TTTTTTGTTTTTTGTTTTTTCCCTTTCAATCATAATCATTCAATTCAACAATAAAATACACTTTGTATTTTAATTTTATC CAAACGTGATGAATTGTTGCAGTGATTGGCACAGCCTTTGCACTTAACATACTCTTCCACATACCATTATGGGTAGGAGT TCTGATGACTGGCTGCAGCACTCTCTTGCTTCTGAGTCTGCAGAGATTTGGGGTAATTTAGCTTTTTGTAATACTTATGA AATATGAACAATATAAAATCTCATTTAAGACATCATAATTCAGTAGTAATGTTTAGTTTTCTCTAAATCGTACACGGTTA GTTGATTCAAGGGATATATGTTTGATTTTCCTTAAGTTAGGTTTTCAATTCGAGTCTTGTGTATGGAAAAACCTCGCTGT TCATGTCATCAACCAAGACTAGATGTCCAGCTATTTTCACTATAATGTTGAACATGTAAATTACAAATTCACCAAGTCAT GTTCATCGTTGATTATGATTGTAGAGGTGTCATAGACTTCTACCTAATGACATGTAAAATTTTCAATATATTCTTAACAA TTGAATATAATATTGTGTCTTAGGCTCTTAGCTGCTTAAAATGGATAATTGCTCTTTGAGTAGTTTTTAAACAATGAGAA GAAAAAGTGGGTTTCATGGTTAAACTAAAAACCGCATTTTCAAGTTGCACATTAACTTTCTTTATCCAGTGTCTATATTT TGTTAACTGCATTGTAATTGAACACTAGAGAACACAAGTTCACATAGAAATTGTTTCTCTTCACCCTTAAGAGTTAAGAT TATATATTTACATAGTTTTTTCTGGTGTTTGTGCAGGTGAGGAAGTTGGAGCTACTGATAACAATCCTAGTTTTTGTGAT GGCTGCATGTTTCTTTGCTGAAATGAGCTATGTCAATGTCCCCGCTTCTGGTATACTCAAGGGAATGTTTGTGCCCAAAC TCGATGGTGATGGAGCCGTTGGCGATGCAATTGCCCTTCTCGGTGCCCTCATCATGCCGTATTCTCTCTTTCCCTTTGAC ATAACTTTCAGAGTTTAATAACTGTGCACTCATAATACAATTTTTTTTTACAACGTCATCTAATTAGAAAAGTTCATGTA TTGTAAATATCTACTACCCAAAATTTTGCTTTGGACAAAATGCAGGCACAATCTTTTCCTCCATTCTGCTCTGGTGCTGT CTAGAAAAGTACCAATTTCGGTGCGCGGCATCAATGTAAGCCATCCTTAAATTAAACAAATCCATAAGTGACAAACTATA AAATTTCACAAATAAATAATATTTGAGACAACTTAAACTCAAACCTAGCAACTGATATAAACATGTTCCTAGTTGCAAAT CTAGCTTTGCTTAATATATAACATGTGAAACTTATACTATTATGACTTATCTGATTGATTATGCAGGATGCATGTAGATA CTTTCTCATAGAAAGTGGGTTCGCACTCTTTGTAGCATTTCTAATCAATGTTGCAATGATTTCTGTCACGGGCACTGTTT GTTTTGCCAACAACCTTTCTGCAGAAAATACTGATCGGTGCAATGATCTTACCCTTAACTCTGCTTCCTTCCTTCTGAAG GTTCTTAATTTAATTCACTATGCAGCAGAAGTTTCTATAATTGAACATAATATAAAGTTTTCTGCCTAACTAAACAAAGT TATCTCACATATAATTTCAATATACATCAATTGCAGAATGCGTTGGGAAGGTCTAGCTCAACCGTTTATGCCATAGCACT TCTAGCCTCAGGACAAAGCTCTACTATCACTGGAACCTATGCAGGGCAGTACATTATGCAGGTAATTAAGAAAATGATTC GTCGAAATCCGCATAGTGCAGACACATTGTGGACACTAAGGGTGAGAAAGAAATGGAAGAGAGAATAGTAAGAGATGTGA TATATAATGTGACGTGATAAGAAGAGAGATTGAGAAAAAAAATGAGGTGTCGGTGGAGTGTCTAACTGTTTGGATGTCTA AATATCATTATTGTTTAGGGATACAATTAAACATTTTTTAATGAAGAAATGATAACTAACATGTTATGTTGAAGGATTTA CTGAATTTAATTAGGTGATTGTTTTGTTGGTGCTATATATAGGGTTTCTTGGAGATAAAGATGAAAAGATGGAAGAGGAA CTTAATGACTAGGTGCATTGCCATAGCACCTAGTCTTGTTGTTTCCATCATTGGTGGTTCTTCTGGATCCAGTCGCCTTA TTATCATTGCATCAGTGTGTATATTCTATATTCTCATTGTTCCCTTCACATAGAGAGAATTGAATTATATATACATGAAC ACCAACTAAAATTGTTTTGCAGATGATACTTTCTTTTGAGCTTCCTTTTGCATTGATTCCACTTCTTAAGTTTAGCAGCA GCAGTACCAAGATGGGACCTCACAAGAATTCTTTGATTGTAAGTTGTCCTTTTCCATTTCTATAAAAGAAAATTCAATCC AAGTAGGATCAAAATCTTCTGTCCCCAAATAGTGTCTCAATTTCCTGTTTCACGAATGAAATATTGTCAGATCAATTAAA AACGACATGAGTGGGGCAGTATCAAATTTATATGGTGGTTTTTAATTGACATATCAAGATTTTATTGGTAGGACTGAGAA TGAGACACAATTTGATATCAGAAGATTTCAATCCTTATATAAAATGGTTATAGCCATTAAGATTAGTGAAATAGATTTGA AAACATGTGACATAATCTTCTTGCAGATTATTGTCATCTCATGGATACTAGGCTTTGGGATCATTGGTGTCAATGTATAC TATCTCAGCACTGCCTTCGTGAAGTGGCTAATTCATAGCAATTTGCCAAAGGTGGCAAATGTGTTCATAGGGATTATAGT GTTTCCTCTAATGGCAGTTTATATTCTCTCAGTTATCTACCTAACATTTAGAAAAGACACTGTTAAGACATATATTGAGA CAAAGAATGACCCAATGCAAAGCCATGTAGAAAATGGGATTTTGGATAATGGTCAATTAGAGTTGAGCCATGCTCCTTAC AGAGAAGACTTAGCTAGTTTCTCACTTCCAGAATAG
CDS sequence (LotjaGi1g1v0264500.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGACACAGAAACCATGGAGAAAGTTCTTGACACATGTAGGTCCTGGTTTCCTGGTCTCCTTGGCTTACCTTGATCCTGG GAACATGGAAACTGATATGCAAGCTGGAGCTAACCACAGATATGAGCTGCTCTGGTTGGTACTCATTGGACTGATATTTG CGCTTATAATTCAGTCATTGGCTGCAAATCTCGGTGTAATCACTGGGAAACACCTTTCAGAAATATGTAAAGCAGAGTAC CCATTATTTGTTAAGTACTGCTTGTGGTTATTAGCAGAGGTTGCTGTCATAGCTGCAGACATACCTGAAGTGATTGGCAC AGCCTTTGCACTTAACATACTCTTCCACATACCATTATGGGTAGGAGTTCTGATGACTGGCTGCAGCACTCTCTTGCTTC TGAGTCTGCAGAGATTTGGGGTGAGGAAGTTGGAGCTACTGATAACAATCCTAGTTTTTGTGATGGCTGCATGTTTCTTT GCTGAAATGAGCTATGTCAATGTCCCCGCTTCTGGTATACTCAAGGGAATGTTTGTGCCCAAACTCGATGGTGATGGAGC CGTTGGCGATGCAATTGCCCTTCTCGGTGCCCTCATCATGCCGCACAATCTTTTCCTCCATTCTGCTCTGGTGCTGTCTA GAAAAGTACCAATTTCGGTGCGCGGCATCAATGATGCATGTAGATACTTTCTCATAGAAAGTGGGTTCGCACTCTTTGTA GCATTTCTAATCAATGTTGCAATGATTTCTGTCACGGGCACTGTTTGTTTTGCCAACAACCTTTCTGCAGAAAATACTGA TCGGTGCAATGATCTTACCCTTAACTCTGCTTCCTTCCTTCTGAAGAATGCGTTGGGAAGGTCTAGCTCAACCGTTTATG CCATAGCACTTCTAGCCTCAGGACAAAGCTCTACTATCACTGGAACCTATGCAGGGCAGTACATTATGCAGGGTTTCTTG GAGATAAAGATGAAAAGATGGAAGAGGAACTTAATGACTAGGTGCATTGCCATAGCACCTAGTCTTGTTGTTTCCATCAT TGGTGGTTCTTCTGGATCCAGTCGCCTTATTATCATTGCATCAATGATACTTTCTTTTGAGCTTCCTTTTGCATTGATTC CACTTCTTAAGTTTAGCAGCAGCAGTACCAAGATGGGACCTCACAAGAATTCTTTGATTATTATTGTCATCTCATGGATA CTAGGCTTTGGGATCATTGGTGTCAATGTATACTATCTCAGCACTGCCTTCGTGAAGTGGCTAATTCATAGCAATTTGCC AAAGGTGGCAAATGTGTTCATAGGGATTATAGTGTTTCCTCTAATGGCAGTTTATATTCTCTCAGTTATCTACCTAACAT TTAGAAAAGACACTGTTAAGACATATATTGAGACAAAGAATGACCCAATGCAAAGCCATGTAGAAAATGGGATTTTGGAT AATGGTCAATTAGAGTTGAGCCATGCTCCTTACAGAGAAGACTTAGCTAGTTTCTCACTTCCAGAATAG
Protein sequence (LotjaGi1g1v0264500.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MTQKPWRKFLTHVGPGFLVSLAYLDPGNMETDMQAGANHRYELLWLVLIGLIFALIIQSLAANLGVITGKHLSEICKAEY PLFVKYCLWLLAEVAVIAADIPEVIGTAFALNILFHIPLWVGVLMTGCSTLLLLSLQRFGVRKLELLITILVFVMAACFF AEMSYVNVPASGILKGMFVPKLDGDGAVGDAIALLGALIMPHNLFLHSALVLSRKVPISVRGINDACRYFLIESGFALFV AFLINVAMISVTGTVCFANNLSAENTDRCNDLTLNSASFLLKNALGRSSSTVYAIALLASGQSSTITGTYAGQYIMQGFL EIKMKRWKRNLMTRCIAIAPSLVVSIIGGSSGSSRLIIIASMILSFELPFALIPLLKFSSSSTKMGPHKNSLIIIVISWI LGFGIIGVNVYYLSTAFVKWLIHSNLPKVANVFIGIIVFPLMAVYILSVIYLTFRKDTVKTYIETKNDPMQSHVENGILD NGQLELSHAPYREDLASFSLPE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Hamap | 1 | 417 | 417 | 36.767 | ||
| Phobius | 1 | 24 | 24 | - | – | |
| Phobius | 1 | 8 | 8 | - | – | |
| PANTHER | 4 | 501 | 498 | 8.9E-275 | ||
| PANTHER | 4 | 501 | 498 | 8.9E-275 | – | |
| TIGRFAM | 7 | 383 | 377 | 5.9E-119 | ||
| Phobius | 9 | 19 | 11 | - | – | |
| Phobius | 20 | 24 | 5 | - | – | |
| Phobius | 25 | 42 | 18 | - | – | |
| Pfam | 30 | 391 | 362 | 6.4E-115 | ||
| Phobius | 43 | 68 | 26 | - | – | |
| TMHMM | 43 | 62 | 20 | - | – | |
| Phobius | 69 | 79 | 11 | - | – | |
| Phobius | 80 | 101 | 22 | - | – | |
| PRINTS | 88 | 114 | 27 | 2.4E-66 | ||
| Phobius | 102 | 112 | 11 | - | – | |
| TMHMM | 113 | 135 | 23 | - | – | |
| Phobius | 113 | 134 | 22 | - | – | |
| PRINTS | 116 | 135 | 20 | 2.4E-66 | ||
| Phobius | 135 | 145 | 11 | - | – | |
| PRINTS | 141 | 162 | 22 | 2.4E-66 | ||
| TMHMM | 144 | 166 | 23 | - | – | |
| Phobius | 146 | 166 | 21 | - | – | |
| Phobius | 167 | 185 | 19 | - | – | |
| Phobius | 186 | 206 | 21 | - | – | |
| TMHMM | 186 | 208 | 23 | - | – | |
| PRINTS | 191 | 214 | 24 | 2.4E-66 | ||
| Phobius | 207 | 226 | 20 | - | – | |
| Phobius | 227 | 251 | 25 | - | – | |
| TMHMM | 229 | 251 | 23 | - | – | |
| Phobius | 252 | 290 | 39 | - | – | |
| Phobius | 291 | 311 | 21 | - | – | |
| TMHMM | 292 | 314 | 23 | - | – | |
| PRINTS | 301 | 320 | 20 | 2.4E-66 | ||
| Phobius | 312 | 330 | 19 | - | – | |
| PRINTS | 329 | 346 | 18 | 2.4E-66 | ||
| Phobius | 331 | 350 | 20 | - | – | |
| TMHMM | 335 | 352 | 18 | - | – | |
| Phobius | 351 | 355 | 5 | - | – | |
| Phobius | 356 | 378 | 23 | - | – | |
| TMHMM | 357 | 379 | 23 | - | – | |
| PRINTS | 361 | 380 | 20 | 2.4E-66 | ||
| Phobius | 379 | 389 | 11 | - | – | |
| Phobius | 390 | 412 | 23 | - | – | |
| TMHMM | 392 | 414 | 23 | - | – | |
| Phobius | 413 | 431 | 19 | - | – | |
| TMHMM | 429 | 451 | 23 | - | – | |
| Phobius | 432 | 454 | 23 | - | – | |
| Phobius | 455 | 502 | 48 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Metal ion transport | The directed movement of metal ions, any metal ion with an electric charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Molecular function | Metal ion transmembrane transporter activity | Enables the transfer of metal ions from one side of a membrane to the other. |
Expression pattern of LotjaGi1g1v0264500.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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