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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0265800 |
| Transcript ID | LotjaGi1g1v0265800.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Pentatricopeptide repeat-containing protein, putative; TAIR: AT1G77360.2 Tetratricopeptide repeat (TPR)-like superfamily protein; Swiss-Prot: sp|Q9FVX2|PP129_ARATH Pentatricopeptide repeat-containing protein At1g77360, mitochondrial; TrEMBL-Plants: tr|A0A072VAZ0|A0A072VAZ0_MEDTR PPR containing plant-like protein; Found in the gene: LotjaGi1g1v0265800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:64905089..64908161) extracted from Lotus japonicus Gifu genome v1.2.
CTTGATTCCACTCCCATATCCAAACAAAGCATTCAAGTTGGCACAAAAACCACTCAACTCAAGTATCATTCTCTCAGCTC AGTTGTGAAGCTGCGGAAGCGTTTGGTAATCCTTCAACTGAGAAGATGCGATTCTATGAGAAATTATGGATCGAATGCGC TGTGAGAGATGACCCATTTCAATACTAGCTTCAAAGAATGCAACTTCAATTCCATATCTCACCATTTTCAACCCAATCCC ACCAAGGTTTTGTTTCGGAAAGTATCACATACGGTGTTTTACTCCTTCCATTGTCCTCTGATTTAGATTTCGCATTTTAC CTTCAAATTCTGATACTTTCTCTGTGCACACCATGATTAAGATTTGCAACCCTAGGAAAAAATTACTATGTAAATTTGTG TCATTTGCTAGAATGCTAAGCACAGGTGAACCACCACCTCAGGAGGTTGCTGATTTAACCGAAACAGTGTGCAAGGTTAT GATGTCTTCACCCGGGGTGACACTTGACGCTGCTCTTAATCAAACTGGGGTTAGGGCATCCCCTGAATTAGTAGAGAATG TCCTCAAGAGGTTTGAGAATGCGGGCATGTCGGCGTTTCGGTTCTTCGAGTGGGCGGAGAGGCAGAGGAATTACGCGCAC ACCGTCAGGGCGTACCACTTGATGATTGAGTCTTTGGCCAGGATTAGGCAGTATCAGATCATGTGGGACATTGTCACGAA AATGAGGAACAAGGGCATGCTAAATGTTGAAACTTTTTGTATTGTTATGCGAAAGTATGCTAGGGCTCACAAGGTGGATG AGGCGGTTTACACGTTTAACGTCATGGATAAGTATGAGGTGCCTCAGAATCTTGCTGCTTTTAATGGTTTGCTGAGTGCT TTGTGTAAGTCTAGGAATGTGAGGAAGGCTCAGGAGATTTTTGATAGTATGAAGGGTCGCTTCGAGCCGGATTTGAAAAC TTATAGCATATTGCTTGAGGGGTGGGGAAAGGATCCGAATCTTCCCAAAGCAAGGGAGACTTTCAGAGAGATGGTTTCCG CGGGATGCAGCCCGGATGTTGTTAGTTATGGTATAATGGTTGACATTCTTTGCAAAGCAGGGAGAGTTGATGAAGCTGTT GAGGTTGTCAAGGATATGGATGACAACAATTGCATGCCAACATCTTTCATTTATAGTGTCCTGGTTCATACTTATGGAGT GGAAAACCGGATTGAAGATGCTATCGACACGTTTCTGGAGATGGAAAGGAAGGGAATCAAGGCTGATGTTGTGGTGTATA ATGCGTTGATTGGTGCTTTTTGTAAAGCAAATAAGTTTAAAAATGTGCGTAGGGTCTTAAAAGAGATGGAAAGCAATGGG GTCACTCCCAATTCAAGGACCTGCAATGTTATCATAAGCAGTTTGATTAGCCAGGGGCGGACTGACAGAGCTTTTGAAGT TTTCCGCCGGATGATCAAGATATGCGAACCGGATGCTGATACTTACACAATGATGATAAAAATGTTTTGTGAGAGAAATG AAATGGATATGGCTATGAAAATATGGAAGTATATGAAGTCAAAAAGGTTTGTCCCAAGCCTGCACACCTTTTCAGCCCTT ATCAATGGGTTGTGTCAAAACGGCAATGCTATGAAAGCTTGTGTTTTGCTGGAAGAGATGATAGAGAAGGGAATTCGACC ATCGCGTGTTACATTTGGGAAGTTAAGACAGCTGCTTATAAAGGAGAAGAGGGAGGACGTGCTCACATTTCTGCATGAGA AAATAAACCTTCTTGTCAAGGAGCCTTTGTGCGACTAAAAAGGCGATGATATATGTAGCTCAGGCTACTGACTTTACAGT CTGGACAGTTGTAGTTTATATGTCTCTGAGCTGCCTATTATGGAGCATAAAAATCTTCATTTAACTGGTAATTTTTTCCT TTATTTCACTTGCTGATTTCTGTTACTTATTGCATTTGTGTTGCTTCTTTTTGTACTATTTACTGTTTTCCTTTTGCTTT CAAACTTATCAGTCTTTATTTTTTAAACATCTGAACTCTGGAGTGCTAATATGCTGCTACGTGCACTTCCTTCGTACTTT TTAAATGCATTGATGATTGGTAGTTTAAACTCAACAAGTATGTTGCTGACTATATGCAAGATCCTTCTCTCTATAGATCA GTTGTGGGAGAACTTAAATATGCTGCTCTTAGTAGGCCAGAAATATCTTTTGCAATCAACAGCGTATGTCAAATTTCTGG CCCAACCACTTGAAGAACACTGGAAGGCAGTCAAAAGAACATTGAGATATCTCAAGGGTTCAATTAGTCATGGATTGCTT CTGCAAAAAGGATGTGTTACCAGTCCTATGACTCTTACTGCATACTGTGATGCTGATTAGGCTTCGGATCCTGATGACTA GGTCCACGTCCGGCTCATGTATATTTTTTGGACTTAATCTAATTTTTAGGTGTTCAAAGAAACAAACTTTAGCCAGCCAA TATAGCACAGAAGCATAATATAGAAGGCTTGGAAACACCACTACTGAGGTTCCTTGGATTGATTCCACGCTGACTGAATA AAAGGTTCCATTTGCGACTCCCCAGATTCTGTGTGATAATCTAAGTACAATTGCTTTTTGTCTCATAATCATGTTCTTCA TGGCTAGAACCAAACATATGGAGTTCGACATTTTCTTTGTAAGAGACAAACTACTAAACAAGAGTCTAACAGTCAAGCAC ATACCATCTCTTGATCAATATACATATATCTTCACCAAAGCCGTACACTCAGAGAAACTAAAGGTGGCTGACAAAATTCT CCTTGGTCATCGAACTTGAGTTTGCAGGGCTGTTAGAAATAATGTTTTGATATTGTTTGTAATTGTATTTCGATCTTATT CTAGATCTGGTTGTACTGTATTATTTCTCAAATAATTCAGGTAGTGTTAGTTATGCAAAGCTTTTACTAACATGACAATT GGCATATAGTTAAGAGTTAGTTTTACAGCACATTGGATAGTTCAATTCATTCAATGATATCAGAAAGATAATTCAGAGAG ACTCTTCTGTTATCTCTCTCAATTTTATCTTAT
CDS sequence (LotjaGi1g1v0265800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATTAAGATTTGCAACCCTAGGAAAAAATTACTATGTAAATTTGTGTCATTTGCTAGAATGCTAAGCACAGGTGAACC ACCACCTCAGGAGGTTGCTGATTTAACCGAAACAGTGTGCAAGGTTATGATGTCTTCACCCGGGGTGACACTTGACGCTG CTCTTAATCAAACTGGGGTTAGGGCATCCCCTGAATTAGTAGAGAATGTCCTCAAGAGGTTTGAGAATGCGGGCATGTCG GCGTTTCGGTTCTTCGAGTGGGCGGAGAGGCAGAGGAATTACGCGCACACCGTCAGGGCGTACCACTTGATGATTGAGTC TTTGGCCAGGATTAGGCAGTATCAGATCATGTGGGACATTGTCACGAAAATGAGGAACAAGGGCATGCTAAATGTTGAAA CTTTTTGTATTGTTATGCGAAAGTATGCTAGGGCTCACAAGGTGGATGAGGCGGTTTACACGTTTAACGTCATGGATAAG TATGAGGTGCCTCAGAATCTTGCTGCTTTTAATGGTTTGCTGAGTGCTTTGTGTAAGTCTAGGAATGTGAGGAAGGCTCA GGAGATTTTTGATAGTATGAAGGGTCGCTTCGAGCCGGATTTGAAAACTTATAGCATATTGCTTGAGGGGTGGGGAAAGG ATCCGAATCTTCCCAAAGCAAGGGAGACTTTCAGAGAGATGGTTTCCGCGGGATGCAGCCCGGATGTTGTTAGTTATGGT ATAATGGTTGACATTCTTTGCAAAGCAGGGAGAGTTGATGAAGCTGTTGAGGTTGTCAAGGATATGGATGACAACAATTG CATGCCAACATCTTTCATTTATAGTGTCCTGGTTCATACTTATGGAGTGGAAAACCGGATTGAAGATGCTATCGACACGT TTCTGGAGATGGAAAGGAAGGGAATCAAGGCTGATGTTGTGGTGTATAATGCGTTGATTGGTGCTTTTTGTAAAGCAAAT AAGTTTAAAAATGTGCGTAGGGTCTTAAAAGAGATGGAAAGCAATGGGGTCACTCCCAATTCAAGGACCTGCAATGTTAT CATAAGCAGTTTGATTAGCCAGGGGCGGACTGACAGAGCTTTTGAAGTTTTCCGCCGGATGATCAAGATATGCGAACCGG ATGCTGATACTTACACAATGATGATAAAAATGTTTTGTGAGAGAAATGAAATGGATATGGCTATGAAAATATGGAAGTAT ATGAAGTCAAAAAGGTTTGTCCCAAGCCTGCACACCTTTTCAGCCCTTATCAATGGGTTGTGTCAAAACGGCAATGCTAT GAAAGCTTGTGTTTTGCTGGAAGAGATGATAGAGAAGGGAATTCGACCATCGCGTGTTACATTTGGGAAGTTAAGACAGC TGCTTATAAAGGAGAAGAGGGAGGACGTGCTCACATTTCTGCATGAGAAAATAAACCTTCTTGTCAAGGAGCCTTTGTGC GACTAA
Protein sequence (LotjaGi1g1v0265800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIKICNPRKKLLCKFVSFARMLSTGEPPPQEVADLTETVCKVMMSSPGVTLDAALNQTGVRASPELVENVLKRFENAGMS AFRFFEWAERQRNYAHTVRAYHLMIESLARIRQYQIMWDIVTKMRNKGMLNVETFCIVMRKYARAHKVDEAVYTFNVMDK YEVPQNLAAFNGLLSALCKSRNVRKAQEIFDSMKGRFEPDLKTYSILLEGWGKDPNLPKARETFREMVSAGCSPDVVSYG IMVDILCKAGRVDEAVEVVKDMDDNNCMPTSFIYSVLVHTYGVENRIEDAIDTFLEMERKGIKADVVVYNALIGAFCKAN KFKNVRRVLKEMESNGVTPNSRTCNVIISSLISQGRTDRAFEVFRRMIKICEPDADTYTMMIKMFCERNEMDMAMKIWKY MKSKRFVPSLHTFSALINGLCQNGNAMKACVLLEEMIEKGIRPSRVTFGKLRQLLIKEKREDVLTFLHEKINLLVKEPLC D
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 19 | 19 | - | – | |
| Gene3D | 41 | 194 | 154 | 3.6E-21 | ||
| SUPERFAMILY | 96 | 398 | 303 | 5.31E-6 | ||
| ProSiteProfiles | 97 | 127 | 31 | 6.686 | ||
| ProSiteProfiles | 131 | 165 | 35 | 8.353 | ||
| PANTHER | 134 | 369 | 236 | 1.8E-82 | – | |
| Pfam | 134 | 160 | 27 | 0.43 | ||
| TIGRFAM | 134 | 163 | 30 | 0.0013 | ||
| Pfam | 166 | 210 | 45 | 4.6E-9 | ||
| ProSiteProfiles | 166 | 196 | 31 | 9.558 | ||
| TIGRFAM | 169 | 195 | 27 | 2.3E-4 | ||
| Gene3D | 195 | 265 | 71 | 5.6E-20 | ||
| ProSiteProfiles | 200 | 234 | 35 | 11.005 | ||
| TIGRFAM | 203 | 236 | 34 | 1.5E-5 | ||
| Pfam | 231 | 262 | 32 | 8.9E-13 | ||
| ProSiteProfiles | 235 | 269 | 35 | 12.715 | ||
| TIGRFAM | 237 | 270 | 34 | 1.5E-8 | ||
| Gene3D | 266 | 352 | 87 | 3.7E-25 | ||
| ProSiteProfiles | 270 | 304 | 35 | 10.073 | ||
| Pfam | 273 | 302 | 30 | 9.0E-4 | ||
| TIGRFAM | 273 | 306 | 34 | 8.8E-6 | ||
| Pfam | 305 | 351 | 47 | 1.0E-13 | ||
| ProSiteProfiles | 305 | 339 | 35 | 13.0 | ||
| TIGRFAM | 307 | 340 | 34 | 1.1E-8 | ||
| ProSiteProfiles | 340 | 370 | 31 | 9.416 | ||
| TIGRFAM | 343 | 369 | 27 | 7.1E-6 | ||
| Gene3D | 353 | 472 | 120 | 6.6E-30 | ||
| PANTHER | 371 | 459 | 89 | 1.8E-82 | – | |
| Pfam | 373 | 422 | 50 | 4.4E-14 | ||
| ProSiteProfiles | 374 | 408 | 35 | 11.762 | ||
| TIGRFAM | 377 | 409 | 33 | 2.4E-7 | ||
| ProSiteProfiles | 409 | 443 | 35 | 12.288 | ||
| TIGRFAM | 411 | 444 | 34 | 1.0E-8 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0265800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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