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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0273500 |
| Transcript ID | LotjaGi1g1v0273500.5 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Carboxypeptidase; TAIR: AT5G42240.1 serine carboxypeptidase-like 42; Swiss-Prot: sp|Q9FH05|SCP42_ARATH Serine carboxypeptidase-like 42; TrEMBL-Plants: tr|V7AW51|V7AW51_PHAVU Carboxypeptidase; Found in the gene: LotjaGi1g1v0273500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:67013861..67017909) extracted from Lotus japonicus Gifu genome v1.2.
ATGGGAGGGTCTTGGGTAGTTGGGTTTTTGGTTGTGGTTGGATTTGCCTGCTTGGTGGGCCCTGTTTGGGTAGATGGGTA CCCTGCTGAGGATCTGGTGGTGAAATTGCCTGGTCAACCCAAGGTTGGGTTCAGGCAATATGCTGGATATGTTGATATTG ATGTCAAGCATGGAAAGAGCTTGTTCTACTATTTTGTGGAGGCTGAACATGACCATGGCAACAAGCCCCTCACCCTTTGG CTCAATGGAGGTTGGTTATATTATACCCTTATTATTCTCATGTTGTTTAATTGCTATTGCTTATGCTACTGTAATTTCTT CATTATTCTTGTTATGAGATTTTGAGTTTTCATGGAATCAATTTTCATCCTTGTTTCATTCCTAATGCCTAGTCAATGTC TCTAGCTTGTTTCTTCCCCCCACCCTCACCCTTTGGCTCAATGGAGGTTGGTTATATTATACCCTTATTATTCTCATGTT GTTTAATTGCTATTGCTTATGCTACTGTAATTTCTTCATTATTCTTGTTATGAGATTTTGAGTTTTCATGGAATCAATTT TCATCCTTGTTTCATTCCTAATGCCTAGTCAATGTCTCTAGCTTGTTTCTTCCCCCCATTTTCCTTTTAGGCTATTTTGT CTTGTCTTTTCATCCTCATACTTGTTCTTATGATGATTTTTATCCTTTTCTGAAAAGCATAGTTGGGTGCCATTTATCTA TCTGTCTTGTCCCTATCAACTCAAGTTGTTTTGTCTTACTGGTGGAAAATCCTGTTTCCTTGCCCCTCACAATGACAGAT CATGTGATCAAAAAATTTGAAATTTCATGACTTTGGCTTTTCAGTAGTGTATCCACAGTTCATAGATACATAATTTTTTT AAATGAAAACTACAATAGGCTAGCATGTTTGTATCAGTTTCTCTTCACTCAAAATCAATTACGAAACTCAGAGGTTACTC ACAGAAGCATCAAAATTGATATTGTTTTCTGAATAAATGGTAAAAGGATTTTCAAACTTCAAATCAAATTATAGAGGTTT TCACATGTTGCAATTACTTTACCTTAAGCTGTTAACTTTCATATATACAAGTATACAACTTCAATTCATCAAGTGCCCGT CTTTCTCAGGTCCGGGGTGTTCTTCAATTGGAGGAGGTGCCTTTACTGAACTAGGTCCCTTTTTTCCTAGTGGTGATGGA CGTGGTCTCAGGAGAAATTCAAAGGCTTGGAATAAAGGTATTTTATGTGACACCAGTTTTTCTTTTAATGTTGGTGAATA ATTTGGGTGTACATTAGTTCCTGAATCCTGATGCTGATGATTTTGTGTCTTTTTCATAGCATCTAACCTCCTCTTTGTGG AGTCTCCTGCTGGTGTTGGTTGGTCATACTCAAATACAACTTCTGATTATAACACTGGAGATGCCTCCTCAGGTAAAGAG GGTGGCCTTTGTATATTCACTTCTATTGTCATAATCTCGCATGTTTGGTTTCATAATTTACATATAAATCAATACGTTGT TTGGAATCTCGTTCAAAAACCACGGTGGATGGAAACAATTTTCCATAGTTTTTTCTTTTGTTCATCATGATTTTGACTTC ATTATCATTTTCGAACGAGTTTCCAAACCTGCAATCAAAAGCTAAAACTAGTAGCATTTCACCGTGGAACCAAACTTGCT ATAAACTTTTCTTCTTGGCTAATACACCATACTTTGTGATTATCTATGCAAAATTTCAAATTTTACTAAGGGATGTGAAC ATAATTTTTGTTTTTTTTTTGTTTTTGACAGCCAATGATCTGCTTTTGTTCATGCTGAAATGGTACGAGAAGTTTCCTTC CTACAGATCAAGGAAGCTGTTCCTTACTGGAGAAAGCTATGCAGGTGCAACAAAAAATAATCGAATCCCAATTCAAATTA ACTTATTCTATTGTTTTGAAGTTCAGAAAAGTTGGTCTCGAGTTTCAAAATATTCTGTTTATATTCAGCTGACGTGATTC TGAAATGAGATTCAACTTTTTATTCTATATTATTTATCCACATGCTGATGATAACTATGCCATCATCATGACTACTATGA AGTTATTGTCCATTTTATATAATTTAATCAAGAAATTGTGTTTTTGTCCTTCTTTTTTCCCCCTCTTGTTTCCCATTTTG CGTTTATTCTGTTTTCTGTTGCTCTGTGATATAATTTTGTTTCTTACATTTTTAATGTCATGCAGGACATTACATACCAC AGTTAGCTAATGCTGTTCTGGATTACAATGCTCATTCAACTAGCTTCAAATTCAACATTAAAGGACTTGCTGTAAGATAC TAAGATCCCATTCATGTGATATCTTTTGGCTTAATTTACTCATAAGTTTTATATTTGTGTTACTTTTGGTCTTTTGGACT AGTCTTTGTTATGCTGAAAGATGCTCTTAAGAGATGAGATTTATCATTTTCTCTTGTTCTTTTTTTTTTGTTAGATTGGA AACCCACTTCTGAAACTGGAACGTGATGCAGAAGCAACATATGAATATTTCTGGTCTCATGGAATGATTTCTGATGAAAT TGGCATGGCGATTATGAATGATTGTGATTTTGATGATTACACCTTCACCTCTACTCACAATGAGTCTAAAGCATGCAACG ATGCCATGAACAAAGCTAATGAGATTGTTGGCGATTACATAAACAACTATGATGTGATTCTGGATGTGTGCTATCCATCC ATAGTTCAACAGGAACTGAGGCTGAAAAAAATTGTACTTAGCCCCTTTCATTTCTTCTGTTCTGGTAATTATTTTTATGA ATTTATAAACAAATAATTAATTTGATTACGTTTAATGCAGGCTACTAAAATAAGCATAGGTGTTGATGTCTGTATGAGTT TTGAAAGAAGCCTGTACTTCAACCTCCCTGAAGTTCAGAAGGCTCTGCATGCAAACCGTACCAATCTTCCATATAAGTGG TCCATGTGCAGTCCGTAAGTCGCTAATTATATATCAAACATTTGTAATCTTCAGCAATAATGCCTACATTCACGCATTCA CGATATATATGGATCGAACTATTAAAATTTGTCGACTTATTTGCTACTTTCACTGCTGAAATGACTGATCTAAGCACATC TTCATTGCAGGGTTTTGAATTATAGCGAAACTGATCCTAAAATCAATATCCTTCCAATTCTCAAACGGATCGTTAAAAAC CATATTCCAGTATGGGTTTTCAGGTAATGATTTCAACAAGCCAGTCATCATTTCCTATATACAGTTTACCTTTTTTTCTT GATCGTACTCTAATTATTTACCTTAAATTATCACAGTGGAGACCAAGATTCTGTTGTGCCATTACTCGGTTCTCGAACAC TCATTCGTGAACTAGCTCATGAACTGCAGTACAAGGTTACAGTCCCATATGGAGCTTGGTTCCACAAAGGCCAGGTACTT AACAATTTCCATTGAAAAATACTTCATTTTTCTGTATTATGGTTTTGTAATTTTATTTATAGTATGTTTAGAATTCCTTG ACCGTGTATCCAAACATGCGCTAAAATTGATTCTAAAACTAAAATCCATTACGGAAAGATGTTCCGTTACTAGCTTCTTG ATATCAGAATTGATTTGGAGAACAAATAAGCATTTAGTATGGTTTCCTATGCTAATCAAGTCATAAATTGATAGTATAGT ATGGTTTTGTAATTTCATTTATAATATGTTTAGAAGTTGTTATACAATTGATTCTAAAGCTAAAATGTGTTATAGAAAAA AAGCCTATATAAGTAGCTTCTGGTTACCAGAATTAATTTTGAGAAAAAAATAAATTGATACAAAGATGTTAATCAAGTTA TAAATTAATGATAATTTGGTGACACATATATATATATGCAGGTTGGAGGTTGGGTAACAGAATATGGAAATTTGTTGACT TTCGCCACAGTAAGGGGAGCTGCTCACATGGTACCTTATGCACAGCCATCAAGAGCACTTGGTCTATTCAGTGCCTTTGT GCGTGGTAGCAGATTGCCAAACACAACACGCCCTTCAATTGATGAATAA
CDS sequence (LotjaGi1g1v0273500.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAGGGTCTTGGGTAGTTGGGTTTTTGGTTGTGGTTGGATTTGCCTGCTTGGTGGGCCCTGTTTGGGTAGATGGGTA CCCTGCTGAGGATCTGGTGGTGAAATTGCCTGGTCAACCCAAGGTTGGGTTCAGGCAATATGCTGGATATGTTGATATTG ATGTCAAGCATGGAAAGAGCTTGTTCTACTATTTTGTGGAGGCTGAACATGACCATGGCAACAAGCCCCTCACCCTTTGG CTCAATGGAGGTCCGGGGTGTTCTTCAATTGGAGGAGGTGCCTTTACTGAACTAGGTCCCTTTTTTCCTAGTGGTGATGG ACGTGGTCTCAGGAGAAATTCAAAGGCTTGGAATAAAGCATCTAACCTCCTCTTTGTGGAGTCTCCTGCTGGTGTTGGTT GGTCATACTCAAATACAACTTCTGATTATAACACTGGAGATGCCTCCTCAGCCAATGATCTGCTTTTGTTCATGCTGAAA TGGTACGAGAAGTTTCCTTCCTACAGATCAAGGAAGCTGTTCCTTACTGGAGAAAGCTATGCAGGACATTACATACCACA GTTAGCTAATGCTGTTCTGGATTACAATGCTCATTCAACTAGCTTCAAATTCAACATTAAAGGACTTGCTATTGGAAACC CACTTCTGAAACTGGAACGTGATGCAGAAGCAACATATGAATATTTCTGGTCTCATGGAATGATTTCTGATGAAATTGGC ATGGCGATTATGAATGATTGTGATTTTGATGATTACACCTTCACCTCTACTCACAATGAGTCTAAAGCATGCAACGATGC CATGAACAAAGCTAATGAGATTGTTGGCGATTACATAAACAACTATGATGTGATTCTGGATGTGTGCTATCCATCCATAG TTCAACAGGAACTGAGGCTGAAAAAAATTGTACTTAGCCCCTTTCATTTCTTCTGTTCTGGTAATTATTTTTATGAATTT ATAAACAAATAA
Protein sequence (LotjaGi1g1v0273500.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGGSWVVGFLVVVGFACLVGPVWVDGYPAEDLVVKLPGQPKVGFRQYAGYVDIDVKHGKSLFYYFVEAEHDHGNKPLTLW LNGGPGCSSIGGGAFTELGPFFPSGDGRGLRRNSKAWNKASNLLFVESPAGVGWSYSNTTSDYNTGDASSANDLLLFMLK WYEKFPSYRSRKLFLTGESYAGHYIPQLANAVLDYNAHSTSFKFNIKGLAIGNPLLKLERDAEATYEYFWSHGMISDEIG MAIMNDCDFDDYTFTSTHNESKACNDAMNKANEIVGDYINNYDVILDVCYPSIVQQELRLKKIVLSPFHFFCSGNYFYEF INK
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 5 | 5 | - | – | |
| SignalP_EUK | 1 | 24 | 24 | - | – | |
| Phobius | 1 | 24 | 24 | - | – | |
| TMHMM | 5 | 27 | 23 | - | – | |
| PANTHER | 6 | 305 | 300 | 8.5E-156 | – | |
| PANTHER | 6 | 305 | 300 | 8.5E-156 | ||
| Phobius | 6 | 19 | 14 | - | – | |
| Phobius | 20 | 24 | 5 | - | – | |
| SUPERFAMILY | 22 | 314 | 293 | 1.97E-76 | ||
| Phobius | 25 | 323 | 299 | - | – | |
| Gene3D | 27 | 300 | 274 | 7.6E-91 | ||
| Pfam | 38 | 322 | 285 | 3.4E-87 | ||
| PRINTS | 113 | 125 | 13 | 9.2E-18 | ||
| PRINTS | 126 | 136 | 11 | 9.2E-18 | ||
| PRINTS | 161 | 186 | 26 | 9.2E-18 | ||
| ProSitePatterns | 175 | 182 | 8 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Serine-type carboxypeptidase activity | Catalysis of the hydrolysis of a peptide bond not more than three residues from the C-terminus of a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine). | ||
| Biological process | Proteolysis | The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds. |
Expression pattern of LotjaGi1g1v0273500.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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