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LotjaGi1g1v0277000.1

Overview

Field Value
Gene ID LotjaGi1g1v0277000
Transcript ID LotjaGi1g1v0277000.1
Lotus japonicus genome version Gifu v1.2
Description Proline-rich cell wall-like protein; TAIR: AT5G53330.1 Ubiquitin-associated/translation elongation factor EF1B protein; Swiss-Prot: sp|Q9NZ09|UBAP1_HUMAN Ubiquitin-associated protein 1; TrEMBL-Plants: tr|I3SQZ2|I3SQZ2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0277000
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:67813916..67819032) extracted from Lotus japonicus Gifu genome v1.2.

CAAATTAGTCCTTAAACTCACAACATCAAGGATGATGACATCTCAAGTGGCACACGCACACGCTTTTGGTGTTCCATTTC CTTCCTACGCAACAACGCAAGTGCTAGTTACGTTTCCTGTGTTTGATCGATCATGGACTACGATTTCAGAACCAGGTCCG GCCAACAACAACCTCCGATGTACCGTGCGCCACCGTCGTCGTCTTCTCCGTCGTCTATCTACCCCAAGATTGGCCCCCAC CCTCCCGGCGCCGCCGTCGGCCGTCCCTCATCGTACCACCAGAATCCGGCTCCTCCATCTTCTTGTAAGTAACGAATTCC ATCTCTCATGTTGAATTAATTGCAACCAGAGGACGATTAGGGATTCATATTTTCAATAATTGAAGTAGAAAACAAGAACT TGAATTAGTCACGTTGAATCACAGTTCTAGAGGAATGATATTGATTTTCCTTGTTGAAATTGCAGCAGGATTGGGAATTA GGGTTGCTATAAAGCCAGATTATAGGATCACGCCGCCGGTAAGTTTCGTTTTGCTTGCTGTCTATGGTGGTACTATTGTG AATTGAGCAATTTTAATGGACATGCTTCCTTTGTGAATAGAAATGTTATGATAGTTGAGTACAGTTGTTGAGTGGTTTTG ACAATTTTGCAGCCTCATTTATTACCACACGTGGTGGATATTCCGCGGAGTAACTTTCAATTTGATTTTGGATTGGAGAG AAAAGTTTTGGCTGAAGGCGAGAAGGATAACCCAAATTGGAGCAAATTTGGGTTGGAAAATCTTCCAACTAAAGTTTCTG ATCATACATCATCATCATCACCAAAGGTTTCTTTTTTTCCCCTTCATTTTGAGGTTCCTATAAATGCTATTGAAGCCTGT GCTAATGATTTTTTCCCTGAATGAATTACGGAGAGGTTATAACTTACTGTTTGCTAGTTCATGATAAATTTGGTACAATA TTTTTCTGTATATATATAAATCTGTTGCTTTCTCCAACGCTCACGGTGTAAAATGAAACTTCTTTTTCCAGGTTACTTCT TCAGATCCCACTGTGAGCAAATATATAGCCATGGGGCTTAATCGAGAGGCTGTTCCCATTGCTATTGGGCATTATGGTGA TAATCCAACCAAAGTATGTTCTTGATCCCTGTAACTCATAATGGCATGATGCTCAGAGATTAGTATTGCTTAAAAGTATG ATTATTATGTTTCTGAATGATGGGAATAGATCTTCAATTGGGAGAGTCTAGGAGAGTAAAAGTAGGGGATCATAATCTTG ATAGAGGCTGTTAGGCTGTTATTGTATCTAACTAGATAGAGGCTGTTACTTGTTAGTTAGTTAGTGCTAAGATCTTATGA TGTGACAGATCTTATTCTATGTTGGGTTTGCGGTTCTTTGCTATCGAGACACTTTCGGATGAAGTGGGGGCAGTGGATGA GGAGACAAGCGGAAGAGGAAGTGGGAGGCATTAGGGTTTACGGTTCTTAGGAAGGTGAGGTGAGATAGTGGTGGGGAGGA AGACCGAAGGAGGTGGGGGTGACAGAGACATGTTGGATTACTCTGGACATATGACAATAAAGATGTGGGCATGTGGCCTA ATGTTTGCCACATATCCATTTTAACAACAGGGACACTGAACAATGATGAGGATATAACTGAGTACTATCTAAAATAAAAT CAAGAGACTAAAATCAGATCATTACAAATTCTTGCCCTGTTCCTGGCTCGGTTCTACAATGGAGCTGGAGCAGATTAGGA AATTAGGATTGTATGCCATAAGAAACAATTCTTTCACTCTTTTTATACCAATGTTACCACTGAATAATAATATATGTTAG ATATCTTTTTCTATGTACTGACCATTCAGATTGAATATTTCTTTGAATCTCATATGGATCTTTCCTTGATACTAGAATTT ATCCTCCAAATTATTACTATGAACTTATTGTTGTCAAGTTGCTAGTTTTTTTATGAATAATGATACAAAGTTGTCATTTA TATAGTTATCTGAACATTGTTTACAACTTTGCATGCCTTGTTTGATCTGATAATCTTCTGCTTCTGACCACCCCTCCCTC TGTATTGGGAAGGAGTATCTTTGTTTTTCTATGGAGTCTTTTGGTTTCTTTTATTGACAAAGGCCAATTATCAATTGGTG GTGTTTTGAGACTAAATATAAGAGTTTTCAAACTAAGTCTCTATTCAAGTAGACAAGTTGCTAAGTGCATTCTGTCAAAG CTTTTCCTCCTGTCATCTGGAGTCTGCTTGAAATGTCCTTAGCATGAGAGCATTTAGGTAGTGTTTGGCCCAGCTTATTT CTAACTTATAAGTTACTTTTAAGTAAAAGTTGGGCCAAACAGATTTTACAATAAGTTCTAAAAATTTAAGTAACTTATTT TTTTACAAAGAAAATATTGAAAAGGAGCTTTTAAGTCAAAGAAAAAAAAGGGAGCTTTTTTGAAAAAGACGCAGCTTATT GTTCTCTCGTTCGACCCTATGCTGATATGATAGAAAACAGATCGACCTTATTCTTGCCTCTTCCAATTTTCTTTTTCTTT CTGTCTTCTCCTTCCTGCTTCCAAGATAGTTTACGCTCTTCTTCTCCTTCCTGCTTCTATGCCCCATGTTACTCCATCTA TATTTCTTTGTGACTTCAAGTTAGTTTTTTTGAGAACTAGATGAGTTTCATCAAAACGTTGAAAGCAGAGACCAAATGAA CTGAATCGATGACCAAAATTGTATAGAACGGATTCATAAAATCATTGCTTCATCGTTCACCATGGTCGTCTGTTATGTTT AAGAAAAAAAAGGAAATTTTCACCTAAATTGATAGGGTACCTGAGTTGAAATTTTCACCTAAAATTCCCTAATTTTATTT ATTTATTCAAGCTTCCTTACTTTACTTGCGTGTCGGCACCTTCAGTCTTGATTTCTCCTATCTTGAATTTGGTCATAATC GTGCTCTAGGTTTCATACTTTCATAGTTTCATTCATTTCATAGCTTGTACAGGTTTTGACCTAAAAAAAACTCATTGTAC AGGTTGAAAGGTAAAAATAATTTTTGAAAATTTCAAACTTTAAATATTTAATTTTTTTACAACCCTTAAATCAATTAGAT TATTTTCATATTAATTTTCAATAACTACTTTTAAATAAAATCAATGCTTAGAAAATCATTTACCAAACAACTTTTAACTT AAAAGTAACTTTCAAACTATAAAAAAATAAAAACAGACAAACAACTTCTACCTTTTTTTAAAAGCTCTTGTTTTAAACTT TAAGTTAAAAGTAACTTTTAAGCTCAAAAAAAGCTGGGCCAAACGCTACCTTAGGAACTTTTCCCACCTTGGATCTTATC TCTCAGCTTTTCACTTTGTGATTCTTATGACGAAAACTATATTAAACTGCCCCAAGTGGTATCATACTGAAAATTACATA CGTCGGAGGGTTCTTTGTATTGTCTGTATTGACTGCATCTGCATGTTCCTTGTTTTATAATTAGTTAATAAATGGTGTTT TTTGTTAGGTTCGGAACTACCTTCAGGTGGTCTAGTGTTTCTCTTATTTAGACTAACGCGGAAATTATATTATTTTTGTT TCCTGGTTGCAACACTAACCACAGATTTGTTTCAGTCTTTAGTGATCAATTCATTTTTATTGACCTCATTTACTGCATGT TTATGGTTTTATTTAGTCATTACATGATGTTCTCTGTTGGTTTCCAAACCAGCTTTAGGTGACCTAGTGTTTTTTTTCTT ATTTAGAGTGCTGAAATTCTTTCATTTTGTATTCCCAGTTGCATGCAACACCAGTAGGCAGATGATATGTCGCATTTTTT ACTGGTTAATTTGTTTCTCTGACTCAATGTATTATTCATCTGAAGGTTCAGGAATTTGTCAATGGATACACCCTTTTGCG TGAAATGGGATTTTCATCAAGCAGCGTTGCTGAAGCCTTGGTTATGCATGACAATGATACAGACAAGGCACTTGCGCATT TTCTAAGTGGCTCATCATGAGGCTCCAGAGGCATGCTTGTTGTAGGTTCATTATTGATGAAGAAATGTAAGTTCCTTTGG TGTTGTAATGGTAAATAATGGTTAAATATAGTTAAGGTAATGGGCACTCTGCTATTGTCAGTCGTGGTAAATATTGGTTT GAAGGTATTGGGTGTTACAGAGAGAACACATAGAGTAGATCTTTACTTTACCCATATTATAATCCAGCTGTAAGATTTTA TTTCAGAAAGACCTTAACCTTTCTACCAGAAAGATTTTACGTTTCCTTTTGGCTAAGATCTTGACTTCTTATAGTGCATG TCTGCTGGAGATTAAAACTGACACCTTCTCTAATGATCATACTATTGGATTCTAAAATCCTGTACGGCTGTACTTAATTT TCAACTACTAGATTTAAGAATCCGGTATATTGTATTTAACACTACCGTTATTTAATCGGTTATGCTTAACAAATTAACGC AACCTGATTTTAAAATCTGGTATGCATTATAAGCTACCAGAGTTTAGAATCAGGTAGTGCTGATTTGTAAAAGGAACATA ACGCTGTCTGATTCTAAAATGCGGTATGCATCCTAAAATGCGGTCTGCATTTTATGAATAACGGATTTTAGAATGAGGTA AGTATTAATCTAAAACTACACCAACAAATGTTGTAATTTGAAACTACTCTAAGACTATCCCATTTATATTTCGCCCTGCC CATGGCTAAGAGCTTAGCGCAGACACTATGGGAAGAGAAAAGAAAAATGAAGATGAAGGGATAAAGAGATTACTTACCAG ATGTTGAGAATGGAATGCAAAGATGGGAGGAAGATGAAGAGAGGAAGAGAGATACAAGGTGGGGAAGATGTAGAGAGTTT GAAAGAGGAAGAGGGTGGTGTTTAGGGGGTTTTAAATCTGGTCTTGATGTTAATATGCTGAACAACTATAATTAAAGTAT GCACTACCATAAATAAATAGTAATTGTTCTTGAAAAGAACCCCAAGACTAAGTAAGCTGAGTAAAACATGATCTGAGAGT GGTATATTGATAAAAGTTGAGTTATAGTGAGTATGGTAAGCCTCCTTTATATACTATGTAGGTCGTCCATCCACAAT
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0277000.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGACTACGATTTCAGAACCAGGTCCGGCCAACAACAACCTCCGATGTACCGTGCGCCACCGTCGTCGTCTTCTCCGTC GTCTATCTACCCCAAGATTGGCCCCCACCCTCCCGGCGCCGCCGTCGGCCGTCCCTCATCGTACCACCAGAATCCGGCTC CTCCATCTTCTTCAGGATTGGGAATTAGGGTTGCTATAAAGCCAGATTATAGGATCACGCCGCCGCCTCATTTATTACCA CACGTGGTGGATATTCCGCGGAGTAACTTTCAATTTGATTTTGGATTGGAGAGAAAAGTTTTGGCTGAAGGCGAGAAGGA TAACCCAAATTGGAGCAAATTTGGGTTGGAAAATCTTCCAACTAAAGTTTCTGATCATACATCATCATCATCACCAAAGG TTACTTCTTCAGATCCCACTGTGAGCAAATATATAGCCATGGGGCTTAATCGAGAGGCTGTTCCCATTGCTATTGGGCAT TATGGTGATAATCCAACCAAAGTTCAGGAATTTGTCAATGGATACACCCTTTTGCGTGAAATGGGATTTTCATCAAGCAG CGTTGCTGAAGCCTTGGTTATGCATGACAATGATACAGACAAGGCACTTGCGCATTTTCTAAGTGGCTCATCATGA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0277000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MDYDFRTRSGQQQPPMYRAPPSSSSPSSIYPKIGPHPPGAAVGRPSSYHQNPAPPSSSGLGIRVAIKPDYRITPPPHLLP HVVDIPRSNFQFDFGLERKVLAEGEKDNPNWSKFGLENLPTKVSDHTSSSSPKVTSSDPTVSKYIAMGLNREAVPIAIGH YGDNPTKVQEFVNGYTLLREMGFSSSSVAEALVMHDNDTDKALAHFLSGSS
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 59 59 - –
MobiDBLite
mobidb-lite
1 30 30 - –
PANTHER
PTHR15960:SF5
25 209 185 9.2E-54 –
PANTHER
PTHR15960
25 209 185 9.2E-54
IPR038870
Gene3D
G3DSA:1.20.120.1920
121 211 91 4.7E-9
IPR042575
SUPERFAMILY
SSF46934
167 209 43 1.53E-5
IPR009060
ProSiteProfiles
PS50030
167 209 43 8.715
IPR015940
CDD
cd14316
171 207 37 1.68425E-9 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000813
Cellular component ESCRT I complex An endosomal sorting complex required for transport. It consists of the class E vacuolar protein sorting (Vps) proteins and interacts with ubiquitinated cargoes.
Subterm of
Part of
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of
GO:0043130
Molecular function Ubiquitin binding Interacting selectively and non-covalently with ubiquitin, a protein that when covalently bound to other cellular proteins marks them for proteolytic degradation.
Subterm of
GO:0043162
Biological process Ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway The chemical reactions and pathways resulting in the breakdown of a protein or peptide covalently tagged with ubiquitin, via the multivesicular body (MVB) sorting pathway; ubiquitin-tagged proteins are sorted into MVBs, and delivered to a lysosome/vacuole for degradation.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0277000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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