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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0288000 |
| Transcript ID | LotjaGi1g1v0288000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | KH domain-containing protein; TAIR: AT5G53060.1 RNA-binding KH domain-containing protein; Swiss-Prot: sp|Q8W4B1|RCF3_ARATH RNA-binding KH domain-containing protein RCF3; TrEMBL-Plants: tr|K7KUU1|K7KUU1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0288000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:69851773..69858396) extracted from Lotus japonicus Gifu genome v1.2.
AACATTATTAAAACCAGACACATTTGGCTCTTCTTACTACTCAACTCAACTCTGCTAAGATGCTTTGAACTTGTTTCTAG GGTTTGCAACAAACCAACAACACACAGTGTTGAAGATGATGATGATGATGAAAACTTCTCTAATTGATTGATTTTCACAA CCAAGTCAACAACATTTCTATAATGCTGGATTGAATTTCACTGATTCTCAAAGAAATTGCAGCTTGAGAATTTGCAAAAA CCCTTGATTTTTCTACTACTCTGGAACTTGAAAACCAAGAGTGTTATGGAGAGGTCTAGATCTAAGAGAAGCTACTACTA TGACCAAGACTATGATTCTGAGACCGTAGCGAGGACCAGGCCGAGGTATAACCACCACTACAGTGCCAGCTCCCACCGCC ACCGTGGCGGCGGAAGGCATGTTAAGGCGCAGGAGCCGCCGGTGACGGTGACGACGAGCTACCGCATTCTGTGTCACGAC TTGAAGGCCGGCGGCGTGATTGGGAAGTCCGGCGGGATTATTAAGTCCATCAGGCAGCGGACCGGCGCGTGGATCAACGT GCATGAGCTGATGCCCGGAGATGAGGAGCGGATCATCGAGATCAGTGACACGCGCCGGCAGGACCCGGATAGGAGGATGC CGTCGTTCTCGCCGGCGCAGGAGGCGTTGCTGATGATACATGAGAGGATCCTGGAGGCTGATGCGGGGGTTGGGGAGGAG GATGAGGAGTATGGAAGGGGTGGTGGTGGTGGTGGCGGTGGTGGGAGTGGCCGTGTTTCGACGAGGTTGGTGGTGTCGAG AATGCATGTAGGGTGTTTGATGGGGAAAGGAGGGAAGATTATTGAACAAATGAGGATGGAGACCAAGACCCAAATTAGAA TACTACCAAGAGATCACAATCTACCTCGTTGTGTTTCCATGTCAGAAGAGATTGTTCAGGTGCTGCAACATGAACTAAAG AAAAACAAATAAGAATCTTGGAACCTTTTTAATTGCATGCATCATGGTTGAAAGTTGAAACTCTTTGTTTTTGTGTGGAG CATGCTCTGTTTTGGTGGTTCTTTTTTTGCTTTTGGAGGACTAATTAAAGTTGCAGAACTGAAGATTTTAATGGCAGCAT TTTCACGTTTCACTTTTCTGTTTGCTTCTTTCTATCATAAATAGTCAGCTTCTTATAGCATAATTAAATAAAAATGATGA AGCATAACTGATTTTAGCTTTGGCATGAACGGCATTTGAAGCTCCTTTATTACTTTCAGCTAAAAATGCTGGAAAAGGAG GAGAGTTTTTCAGCTCCGAAGCAATCTGATTGGCTTTCGATAGGTGTTTATGGAGTGCATTTTATGATGGATTGTTAGTT CTGTGCTGCATTTCCCATGTTTGTTAGCAACTGCTTTTGATTAAGTGGTGGATCCTGTGTTTCTGCAATGATCTGGTAGA ACTCGGCTAGATCAAGTGCATGCATTTATTGATTGGTTTTTCGTTCTGCTAATCCAGACAAAAAACAAGCAGTCCTGAAC CGATATGAGGATATTATTTTTCATGGTTCTCTGTTTTAACTGGTTTTTAGCGGGGGCATCATTGTGCTAATGAAGTTTCA TAGTTGAGCAAGACCATTTGTAAAGATCTGATGTAATCTACCTGAAATTTTACTGATTTAGAAGATATTTGAACTGAAGA CAATTAAGTAGACGATGATCTGTGCAGGTTACAGGTGATGTTAATGCTGTAAAGAATGCTCTAGAAGTTATATCATCCCG ATTGAGGGAGAGCCAACACCGTGACCGTGGTCATTTTCATGGACGTGGACATTCACCAGAACGTTTCTTTTCTCCTGACG ATGATTATATTCCTCGTAGATCATCTATGGACCGGCCTGGTTTTGGATCACGAATAGCTACCACCAATACCAGAAACAAT AGTCACTCCTCATTAGGTTATGCAATGGAGCAAGGGGCTCCTCCTGTGGCTGATGATGCACAGCCCTTGTATGGAGAGGA CATTGTTTTTCGTATACTTTGTCCAGTTGAGAAAGTTGATCGTATTATTGGGGAATCAGATGGAATTGTAGAGTTCCTTC AGAATGAAGTTGGCGTAGATGTAAGGGTCATCAATCCTGTTGGCGGTTCAAATGAACAGATAGTTATCGTTACTTCCGAA GAGGTACTTTCCTTCTCTGATTTTCTCCGTCTATGGTGTAGTGTAGTGCAAATTCTTGTAGGCAAGGTAGTCAAAATTGG AAAGGGGCAAAAATTGTAAATCACAAAATCACATACCTTTTTGTAAAATTTTGCAAAATTCATAATGCATATAAACTCTT ACGTAGGCATATAAAAATAAGAAGGAAAAATAAAACCAAACCCCATATATCAAGTTTTTGATGAATTTCAAGGCATAAAA CTTTAACACCAATGCTAAATAGTAAATGGCAGCGTTCTAGTTATAGAATTTAGGTGTCTAATCTAACAAATATGCCTTAG AGAACTCGTAAAACTGAGAAGGAAGAAACAGTGAACGAAGAAATCTCGAACAGAAGAAACTTGGACGGAGAACAGAAAAC TCGCCGATAGAGCACAAGGAAGATGATATATAGTCCTGCTGGAAGAAGAATCTTTAGGGTTGAAGCAGCCGCCGATAGAA AATTTTAGGGTTGGGGTATTAGTGAAATTGGGTCAAATAAGGAAAAGGGTTGAAAACCCGATTCAAATAAGAATTTCTTC TAAATGTTAATTGGGATTTTGCTGCAATTTTGGAATTAAAATAGTTATTTCAGTGGAATTTAGCCAGATTAGGATTTTTC ATCCAAATCGGTATCGATCTAAGTCGCTGGCCCCCTCCCTAGTCGTATGATCGTAGGATTTCGGGAATTAAAATTGGGAT TTGACTGCCATGGTTGTAGGTCACTTGTTAAGGCTGGAAGTGTTCTGGGATAATTCTGCTTCAGTATCTGTAACTTAAAC TCTTTTATATGCAGTTCAATATGTTTTCAACATACATGTATTATATACCGCATGTTCAAAGTTCTAACTGTTATTATTTT GTACCTAAGGGTCCTGATGATGTGCTGTTCCCAGCTCAGGAAGCTTTGCTACATATACAAACTCGTATTGTCGATCTTGT TCTTGATAAGGACAATTTTATAACCACCAGGCTTGTTGTTCCTTCTAGCTACATTGAATGCTTAGATGGAAAAGATGCAT CACTATCGGAAATAAGGAGGTTGACTGGGGCTAATATTCAAATATTGCCTAGAGAAGAACTACCTTCCTGTGTTGCAAAA ACTGATGAATTGGTACAGGTTTGTCATTTGGCCTACAGCTTGGTTAAACATTCTAATAGATTCCTTTGGTATATGTAGTC TGAATGAATGATAAATATTGAACTTTATATTGATAATAATAGATCTTATTCCTAAAAGCATGATACTGAATGCATATGTG CGACATTGCCCTGCCTATCGATAAGGTTAAAACAAAGATCCAGTATTATTATGCTGTTTTTGTTCATTTCTCAATTGCTT CTTTATTACCTCTTCAGATTGTGGGAGAGATAAAAGCAGCCCGAGATGCTGTTGTTGAGGTGACCTCAAGATTAAGAAGT TACTTGTATAGGGATTTCTTTCAAAGGGACATAGTACCACCATCAGCCTCCCTACCTGGTTTTGAGGCATCTTCTTCCAA TAATATTTCTCTAGTTGCTGAAACTTCCTCAATCTATCAGAATGTGCAAAGTATGGCAGCAGCCCTTCCATCAAAGGTAT TGTTTTGCCATTTTCATCTTCAATATTACCCTTCTTTATTGCTTATTATGACTGGCATTTGGAGTCTTGGAGATTTATTA GCCTTCTTTACTTATTTTCCTTTAACTCTAATTTTTTATTGTTTAGACTTATACACTTTCCTATAGGGTTCTTTAATTTT CCTTTCAAATTTTTAGTTGTCAATGACAAGAGTTGATATCACATCCATTTTCTATATACTACTGTTTAGACATATTATTT ATGCGCAGCAGATCACTTCTTAACTTACAATAAATAATTCTATTAAATTGAAATCAATTGCATATACAATCAGATCTTAT TAGTAATTCTGGAATTAAAATTTATTGGAAATAATGAGCACAAAGTCAATATTATATAATGTATCAAAGTACAAATATGG ATAATACAATTATTTTTATTCGGTCTCCAATGCAATGTGTGGGTTTACATTTAGTTTGTCCTGTAATCTTCGATAGATTC CCATAGAGCAAGCTGTATTATATTGGAATGGATTTTATATGCAGCATACTATCTCAAATGTTCTCCATAGTTTGGGGAGT CAATGGTAGCGAATAGTGATGCACTGATGCAGTGATGGCTTGTATCACTTTATAGAGAATGTTGATTTTGTTTTAAAATT TTATTTGAAGGAAAAAAACTTACTTTTCTTTCTTTCTGTTTTGAAGGAAAGTGGAGGATCTAGCTTTGAGGCAGGAAAAC AAAAAGAAAGTGACCGTGGAGATGATGTGCTCGGCAGTTTAAATAGGTAACTTGTCCCTACCACATTTCATGTTAGGGTA TTGTTTTTCAGTGTGGAGTGACTTGCCAAATCTCATCCTTTTCTTCAGTAGGTTGAAGTGTAAATAGTTAAGGTGTTTTC TTTCTATCCTTCTCCCTTTATAATGGTGTTATTTCCCCCCACCTTTTGTAATTGTGGTTAGGCTTGCTGTGCCTCTCGTC ACAAGGAGTACACTTGAAGTTGTCATACCAGAGTATGCAGTTCCGAAGCTTACAGCAAAATCCAGAAGCAAGCTCGCACA GATAAGTGAGGTGTGTGTGATTAGATCTTTCAATCCCTTAAATATATTATCATGCTTACTACCTATGCACCCTATTATAT CATTGGGGAACTTTCCCCTCCCCCTTGTTCTATGAGCAACTTAGTTACTCTTAGAACCAGTGTTATCCATCCCGGATAGC GGCATGTAGAGGTGCCAACCACAAAAATGCTATAGCAGGGTGGCCACTACTCTGAAATTTTTGTACATAATAAACAATAT ACATGGAAAAAGGGTAAACATGGGGGTAGTGAGACAAAAGGGAAAACGGAGCAGTGAGCTGCCAGAAAGCAGATTTTTGC TGTCTTGAGAACACCAGATCATGATTGGAAAGTCACTATAAAGTAATAGGTCAGACAGTGGCAGTCAGAAAAATGCAGAG CTGATGGACAGAGGGTATGTTTGCCAGAAAACACTAGGTTCTGACCATAAAACAGTGTCTAGCAATGGGTTTCCGGTGCT GCAATGGCGGAGAAAGAAGGTAGATACGAGACTGAGACGAGAGGGATAAAGGATGTCCTGTCCTCTTCGATCCCTGATTC CCCTCTAAACGTTGAAAAACAGGATTTTTCTATATATTTCAGAATTACAGACCAAAACCGTGCAATTCCCACTGCTGTAG GGGCCTTGACGGCCATGAAAAGAGAGTGCTGCTGTACGAACTGGTTCTATCACTCTGCTATGAGTGCTATCGCACACGAT TGATACCTCTGCCTGGAATAAGAATGACTGACCCTTTTTTAAATAACTAATGAATTGTTCTTTACATTGCTATGCTCCCA GATAGTCGTTTTTATTTATTGTTTTAGCTCTATGAATGAAAAGCAAATTTTAATAACTTGGCAATATCTTTTTGTCTGGG ATTTTGATTCTGCAAATTATCATTGTCGCAATTTTAAATTTTAATACAAAGTCATGCTTATTCACTTATGTTTTGATGAA AACAGTTATCCGGAGCCAATGTGACTCTTGTTGAGGATAGACCAGATGTGACGCAGAAAATTATTCAGATATCTGGTACT CCAGAGCAGGCAGAGAGAGCCCAGAGCTTACTTCAAGGATTTATTTTGAGCAGTAAGTCCTATCAATGTGTTGGGTTTAG CTATGTTAATTCTCATGCATGCATATTCTTGGTTCTTAAACACCCATGTCTTGTTATCAATTGACATGGCTTTTATTTTT TTTGTTTTTACCCTTTTACAGCTCAAGAAGATGGCCCTTGACTTATGGATACACCATTGATTTAGTTAGTGCCCGAGACA TTTTGTTCCATGCATGGATTGGTTTTCCATGTCTGAGATTGTTGTTACAAAAAGGTGGAATTTTCAATGAGAGAAGTATT CCCCTGTAAATGTTGTACCAAGAGAGCTCCTTTGTTCATTTTGTTTGTAGTACTTAGTACTCCCCTAGTCATATGGTTTC ATGAAACTAAATTCAGCAGCAACAACAGTTGTATAGTTCATTTCCGATGGCCATTGTACCTCCTAATTGAACAAATATTT TTGAATCTCAATCCTGAGCTTTATGGCATGCTGGATTTGTTTTGTTATTACAACTGCTCCATCACCAGTCACTGAGCAAG CACTAAATGGACGCTTGATTTGCAGTTGAAAAAGGTTTTGTTCAGACTTCTTTTAAATTTACACCAAGAGAGACAAAAAC AGGCGGAAATGATTGAGTGATATGATAATGATAGGAGATGAAGAGATATGGGAATAGAGAGTAACTCAAGAGAAAGTGAA ATGGAAATGAATCATAACTCTACTATAGAGTTTGAAATGGTAATGCCAGATTTGTTTAAAAGAC
CDS sequence (LotjaGi1g1v0288000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGAGGTCTAGATCTAAGAGAAGCTACTACTATGACCAAGACTATGATTCTGAGACCGTAGCGAGGACCAGGCCGAG GTATAACCACCACTACAGTGCCAGCTCCCACCGCCACCGTGGCGGCGGAAGGCATGTTAAGGCGCAGGAGCCGCCGGTGA CGGTGACGACGAGCTACCGCATTCTGTGTCACGACTTGAAGGCCGGCGGCGTGATTGGGAAGTCCGGCGGGATTATTAAG TCCATCAGGCAGCGGACCGGCGCGTGGATCAACGTGCATGAGCTGATGCCCGGAGATGAGGAGCGGATCATCGAGATCAG TGACACGCGCCGGCAGGACCCGGATAGGAGGATGCCGTCGTTCTCGCCGGCGCAGGAGGCGTTGCTGATGATACATGAGA GGATCCTGGAGGCTGATGCGGGGGTTGGGGAGGAGGATGAGGAGTATGGAAGGGGTGGTGGTGGTGGTGGCGGTGGTGGG AGTGGCCGTGTTTCGACGAGGTTGGTGGTGTCGAGAATGCATGTAGGGTGTTTGATGGGGAAAGGAGGGAAGATTATTGA ACAAATGAGGATGGAGACCAAGACCCAAATTAGAATACTACCAAGAGATCACAATCTACCTCGTTGTGTTTCCATGTCAG AAGAGATTGTTCAGGTTACAGGTGATGTTAATGCTGTAAAGAATGCTCTAGAAGTTATATCATCCCGATTGAGGGAGAGC CAACACCGTGACCGTGGTCATTTTCATGGACGTGGACATTCACCAGAACGTTTCTTTTCTCCTGACGATGATTATATTCC TCGTAGATCATCTATGGACCGGCCTGGTTTTGGATCACGAATAGCTACCACCAATACCAGAAACAATAGTCACTCCTCAT TAGGTTATGCAATGGAGCAAGGGGCTCCTCCTGTGGCTGATGATGCACAGCCCTTGTATGGAGAGGACATTGTTTTTCGT ATACTTTGTCCAGTTGAGAAAGTTGATCGTATTATTGGGGAATCAGATGGAATTGTAGAGTTCCTTCAGAATGAAGTTGG CGTAGATGTAAGGGTCATCAATCCTGTTGGCGGTTCAAATGAACAGATAGTTATCGTTACTTCCGAAGAGGGTCCTGATG ATGTGCTGTTCCCAGCTCAGGAAGCTTTGCTACATATACAAACTCGTATTGTCGATCTTGTTCTTGATAAGGACAATTTT ATAACCACCAGGCTTGTTGTTCCTTCTAGCTACATTGAATGCTTAGATGGAAAAGATGCATCACTATCGGAAATAAGGAG GTTGACTGGGGCTAATATTCAAATATTGCCTAGAGAAGAACTACCTTCCTGTGTTGCAAAAACTGATGAATTGGTACAGA TTGTGGGAGAGATAAAAGCAGCCCGAGATGCTGTTGTTGAGGTGACCTCAAGATTAAGAAGTTACTTGTATAGGGATTTC TTTCAAAGGGACATAGTACCACCATCAGCCTCCCTACCTGGTTTTGAGGCATCTTCTTCCAATAATATTTCTCTAGTTGC TGAAACTTCCTCAATCTATCAGAATGTGCAAAGTATGGCAGCAGCCCTTCCATCAAAGGAAAGTGGAGGATCTAGCTTTG AGGCAGGAAAACAAAAAGAAAGTGACCGTGGAGATGATGTGCTCGGCAGTTTAAATAGGCTTGCTGTGCCTCTCGTCACA AGGAGTACACTTGAAGTTGTCATACCAGAGTATGCAGTTCCGAAGCTTACAGCAAAATCCAGAAGCAAGCTCGCACAGAT AAGTGAGTTATCCGGAGCCAATGTGACTCTTGTTGAGGATAGACCAGATGTGACGCAGAAAATTATTCAGATATCTGGTA CTCCAGAGCAGGCAGAGAGAGCCCAGAGCTTACTTCAAGGATTTATTTTGAGCACTCAAGAAGATGGCCCTTGA
Protein sequence (LotjaGi1g1v0288000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MERSRSKRSYYYDQDYDSETVARTRPRYNHHYSASSHRHRGGGRHVKAQEPPVTVTTSYRILCHDLKAGGVIGKSGGIIK SIRQRTGAWINVHELMPGDEERIIEISDTRRQDPDRRMPSFSPAQEALLMIHERILEADAGVGEEDEEYGRGGGGGGGGG SGRVSTRLVVSRMHVGCLMGKGGKIIEQMRMETKTQIRILPRDHNLPRCVSMSEEIVQVTGDVNAVKNALEVISSRLRES QHRDRGHFHGRGHSPERFFSPDDDYIPRRSSMDRPGFGSRIATTNTRNNSHSSLGYAMEQGAPPVADDAQPLYGEDIVFR ILCPVEKVDRIIGESDGIVEFLQNEVGVDVRVINPVGGSNEQIVIVTSEEGPDDVLFPAQEALLHIQTRIVDLVLDKDNF ITTRLVVPSSYIECLDGKDASLSEIRRLTGANIQILPREELPSCVAKTDELVQIVGEIKAARDAVVEVTSRLRSYLYRDF FQRDIVPPSASLPGFEASSSNNISLVAETSSIYQNVQSMAAALPSKESGGSSFEAGKQKESDRGDDVLGSLNRLAVPLVT RSTLEVVIPEYAVPKLTAKSRSKLAQISELSGANVTLVEDRPDVTQKIIQISGTPEQAERAQSLLQGFILSTQEDGP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 627 | 627 | 1.1E-280 | – | |
| PANTHER | 1 | 627 | 627 | 1.1E-280 | – | |
| SUPERFAMILY | 53 | 108 | 56 | 1.56E-10 | ||
| Gene3D | 54 | 136 | 83 | 3.3E-14 | ||
| SMART | 55 | 136 | 82 | 2.5E-5 | ||
| ProSiteProfiles | 56 | 128 | 73 | 11.72 | – | |
| CDD | 58 | 132 | 75 | 2.23144E-17 | – | |
| Pfam | 59 | 107 | 49 | 6.9E-9 | ||
| MobiDBLite | 143 | 163 | 21 | - | – | |
| SUPERFAMILY | 159 | 243 | 85 | 1.61E-13 | ||
| SMART | 162 | 238 | 77 | 2.6E-8 | ||
| Gene3D | 163 | 243 | 81 | 1.4E-15 | ||
| ProSiteProfiles | 163 | 233 | 71 | 14.634 | – | |
| CDD | 165 | 234 | 70 | 1.16983E-15 | – | |
| Pfam | 166 | 234 | 69 | 4.8E-12 | ||
| MobiDBLite | 241 | 266 | 26 | - | – | |
| SUPERFAMILY | 310 | 371 | 62 | 8.2E-8 | ||
| SMART | 315 | 388 | 74 | 1.6 | ||
| ProSiteProfiles | 316 | 383 | 68 | 9.163 | – | |
| Gene3D | 316 | 476 | 161 | 3.8E-19 | – | |
| SUPERFAMILY | 393 | 481 | 89 | 4.41E-9 | ||
| SMART | 399 | 473 | 75 | 0.43 | ||
| Pfam | 402 | 467 | 66 | 1.7E-5 | ||
| MobiDBLite | 524 | 546 | 23 | - | – | |
| Gene3D | 560 | 631 | 72 | 1.7E-9 | ||
| SMART | 560 | 630 | 71 | 9.7E-5 | ||
| ProSiteProfiles | 561 | 625 | 65 | 12.181 | – | |
| SUPERFAMILY | 562 | 633 | 72 | 2.05E-9 | ||
| Pfam | 563 | 626 | 64 | 3.3E-7 | ||
| CDD | 563 | 626 | 64 | 1.22899E-8 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. |
Expression pattern of LotjaGi1g1v0288000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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