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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0297500 |
| Transcript ID | LotjaGi1g1v0297500.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Retrovirus-related Pol polyprotein from transposon TNT 1-94; TAIR: AT1G21280.1 Copia-like polyprotein/retrotransposon; Swiss-Prot: sp|Q06AK6|TFP11_PIG Tuftelin-interacting protein 11; TrEMBL-Plants: tr|A0A151QYF6|A0A151QYF6_CAJCA Uncharacterized protein; Found in the gene: LotjaGi1g1v0297500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:72089681..72091856) extracted from Lotus japonicus Gifu genome v1.2.
TCAGAATTGAATTACAGTTGTTAGTGAGGACCTTATTGTAATATGTAGAAGTTAGTTAAATGTCAGTTAGCATTCTGTTA GATACAACTGGCAATTAGTTAGATACAACTGTCAATTAGTTACAGCTAAGCACAGTTAGTCAGAAGCTAATCATAGTATA AATAGCTTCATCTCTTGTATCTTCGTTAATTGATTGAATAATCAAAATCACTGTTCATCTTCTTCTTTCTTGTTGAGAAG AAACTCTTCTCTGATTTCTTTGATGGTATCAGAGCCTTAACCAGGGTTCTGCCATCACCAACTTCCGCAGCTATGGTGCG TCAAGCACAGATCAACAACAACAACGGCAATCCCCAACAGCATGTGGTATTGGAACCAGCACAAAATCCGATTTCGCCTT ACTACATCCATTCTGGAGAAAATCCCTCTGCAACAATGGTGTCACCTCCTCTCAATGGCAGAAACTACAATGCTTGGGCA CGGTCAATGAAGCGTGTGTTGGTTGCGAAGAACAAATTCAAGTTCATCAATGGTGAGATTCAAGTTGCAGTGCCAGGAGA TGCAAACTATGAGGCTTGGGATCGATGCAATAGCTTAATCAATTCTTGGATTCTCAATTCGGTAACTTCTTCCATAGCTA ATAGCATAGTGTTTGTTGAAAATGCATGTGATGCCTGGAAGGATCTGCATGATAGGTTTTCACAGGGAGATTTAGTTCGA ATTGCAGAATTACAGAATGAAATAAGTAATTTGAAACAAAATACACTTTCTGTGAATGATTACTATACTGAGATTAAGAC ACTTTGGGAAGAATTGGAACAATATCGTCCAATTCCACGGTGTAGGTGTGAAATGCCTTGTAGATGTGAAGCCATAGAGC AAGTTAAGCTGTTCAGGGAACATGATAATGCGATTAGGTTTCTTTTGGGACTGTATGAGAATTTTGGAGTGGTAAAATCA CAAATCTTGATGTCAAATCCTTTTCCTTCTATAGCTAAGGTTGTGTCTATAGCTATGCAGCATGAGAGACAATCAGAAAC TGAAGATAATGATGATTCTAAAGCATTGGTTAATGCAGCAGAAGGGAAAAAGTCTTATGGTAAAGGAAAAGCTTCAAGCT CAGGTTCTGGTTCTGGCCATAATGGCTTCAATAACTCCAGTTCTAGTTACAAGAATGCAGGAAAATACTGTACTCATTGC AAGAAGTCGGGGCATACTGTAGAAGTTTGTTATAGACTTCATGGTTATCCAACAGCTTTCAAGCCTAAAACTGGTTATAA TAATGTTAGTCATGCTAACAATGTTTCTGGAGGTTATGACTCTGCAGATGATGCAGATGACAGTTCAGTTGTGCACAAAG ACAATGTAGATCTTTTTACAGCTGATCAATACAAGAGAATCATGGCAATGATTCAACAAGCAACAATTTCACAGAAGAAT AGTTATTCAAAGAGTGCTTCAGTCAACCATGTGATCAGATCCAGAATTTCTGAGGCAGAAACAGCAGGATATGGTAAGCA TTCAGCCTTATCTTGTTCACAAAGATATAATACCAAAGATTGGATTATTGACTCTAGAGCTAGTGATCACATATGCTTTG ACAGATTGAGTTTTAACACATTGAGTAGAATAAAACATATTACTGTTAAATTACCTAATGGTGCATCTATACAGACTAGT TATGCTGGCACAGTTAAGCTTACTGATTTGATTCTGCTCACACATGTGTTGTTTGTGCCTGAATTTACATAAAACCTGAT ATCAGTTCATAAGTTAGCCAAAGAAAATGTCTGTGAAGTAATCTTTGGTGAAATTACTTGTTTTGTTCAGGATGTTCAAA CCAAGAGGAGGATTGGTTTGGGTAGCTTACAAGAAGATGAGCTGTACCATTTGGTTGTGACTGGTCCTTCTAGTATTTGT TTTTCTGTCAAAAATGTACATACTGAAATAAATGGTTTAGGACAAGTGATTCCTGCTAGTTCATTGTGGCACTTTAGGCT AGGACACTTGTCACATGATAGGATTCATGCCTTAAATGCAATGTATTCAGCTATTACTGTAAATAAATCACTTGTATGTG ATATTTGCCATTTGGCAAAACAAAAGAAGAAAATGTTTTCAAACAGTTTACATAATGCAAAAGATTGTTTTGATCTTGTC CATATGGATGTTTGGG
CDS sequence (LotjaGi1g1v0297500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGCGTCAAGCACAGATCAACAACAACAACGGCAATCCCCAACAGCATGTGGTATTGGAACCAGCACAAAATCCGAT TTCGCCTTACTACATCCATTCTGGAGAAAATCCCTCTGCAACAATGGTGTCACCTCCTCTCAATGGCAGAAACTACAATG CTTGGGCACGGTCAATGAAGCGTGTGTTGGTTGCGAAGAACAAATTCAAGTTCATCAATGGTGAGATTCAAGTTGCAGTG CCAGGAGATGCAAACTATGAGGCTTGGGATCGATGCAATAGCTTAATCAATTCTTGGATTCTCAATTCGGTAACTTCTTC CATAGCTAATAGCATAGTGTTTGTTGAAAATGCATGTGATGCCTGGAAGGATCTGCATGATAGGTTTTCACAGGGAGATT TAGTTCGAATTGCAGAATTACAGAATGAAATAAGTAATTTGAAACAAAATACACTTTCTGTGAATGATTACTATACTGAG ATTAAGACACTTTGGGAAGAATTGGAACAATATCGTCCAATTCCACGGTGTAGGTGTGAAATGCCTTGTAGATGTGAAGC CATAGAGCAAGTTAAGCTGTTCAGGGAACATGATAATGCGATTAGGTTTCTTTTGGGACTGTATGAGAATTTTGGAGTGG TAAAATCACAAATCTTGATGTCAAATCCTTTTCCTTCTATAGCTAAGGTTGTGTCTATAGCTATGCAGCATGAGAGACAA TCAGAAACTGAAGATAATGATGATTCTAAAGCATTGGTTAATGCAGCAGAAGGGAAAAAGTCTTATGGTAAAGGAAAAGC TTCAAGCTCAGGTTCTGGTTCTGGCCATAATGGCTTCAATAACTCCAGTTCTAGTTACAAGAATGCAGGAAAATACTGTA CTCATTGCAAGAAGTCGGGGCATACTGTAGAAGTTTGTTATAGACTTCATGGTTATCCAACAGCTTTCAAGCCTAAAACT GGTTATAATAATGTTAGTCATGCTAACAATGTTTCTGGAGGTTATGACTCTGCAGATGATGCAGATGACAGTTCAGTTGT GCACAAAGACAATGTAGATCTTTTTACAGCTGATCAATACAAGAGAATCATGGCAATGATTCAACAAGCAACAATTTCAC AGAAGAATAGTTATTCAAAGAGTGCTTCAGTCAACCATGTGATCAGATCCAGAATTTCTGAGGCAGAAACAGCAGGATAT GGATGTTCAAACCAAGAGGAGGATTGGTTTGGGTAG
Protein sequence (LotjaGi1g1v0297500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVRQAQINNNNGNPQQHVVLEPAQNPISPYYIHSGENPSATMVSPPLNGRNYNAWARSMKRVLVAKNKFKFINGEIQVAV PGDANYEAWDRCNSLINSWILNSVTSSIANSIVFVENACDAWKDLHDRFSQGDLVRIAELQNEISNLKQNTLSVNDYYTE IKTLWEELEQYRPIPRCRCEMPCRCEAIEQVKLFREHDNAIRFLLGLYENFGVVKSQILMSNPFPSIAKVVSIAMQHERQ SETEDNDDSKALVNAAEGKKSYGKGKASSSGSGSGHNGFNNSSSSYKNAGKYCTHCKKSGHTVEVCYRLHGYPTAFKPKT GYNNVSHANNVSGGYDSADDADDSSVVHKDNVDLFTADQYKRIMAMIQQATISQKNSYSKSASVNHVIRSRISEAETAGY GCSNQEEDWFG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | 33 | 77 | 45 | 1.1E-13 | ||
| PANTHER | 64 | 368 | 305 | 9.7E-73 | – | |
| PANTHER | 64 | 368 | 305 | 9.7E-73 | – | |
| Pfam | 97 | 170 | 74 | 2.2E-11 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0297500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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