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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0307300 |
Transcript ID | LotjaGi1g1v0307300.1 |
Related isoforms 1 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | Ring finger protein, putative; TAIR: AT3G10910.1 RING/U-box superfamily protein; Swiss-Prot: sp|Q9SG96|ATL72_ARATH RING-H2 finger protein ATL72; TrEMBL-Plants: tr|K7KV15|K7KV15_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0307300 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:74829103..74831725) extracted from Lotus japonicus Gifu genome v1.2.
GGAGACAACAAAGTAGCTATATTGCTTTCTTCCGTAACATAATATCTATGTCCTGTTGGTTGCCTCTGAAACTTCTTAAT AAACAACAAAGCACCACAAGACAACCACTCCTCTTAATGTCCACACTACATACCCACCCAAACCTTCTTCTGTGTCATAA ATTTTGAGTCCATTATATATAGCAAGAAGAGCAGCTGTAAGCCTGCAACCACTCCTGGTGAAAAACATCACAAGCCTGTT GAGGTAAGATATCAATTAAACTTTCAGAGTCATGGTTTCCTGACAGATATTGATGATGTGGACCTAGGTAATGGCCTAGT GTCACTAAGGTATATGTTAGGAAGGTCAGAAGAGTGAATACATTTAATTCTCACTAGTGATAACTGCCTTGCAGATGTGG CAGTATCTTCAGGAGAAAATAGGCTGAGCAAAGAGTGTGTGAAGGATAGAGAGTGGGAGAGAAAGGCATTCTTGTATCTA GTTCTTACTTTCTCTTTGTATTTTCCTTAAATCTGGACCTGAGTTCATCTCAGAAATCCAGATCTCTCCAACACAATTAG AATTCAATTCTATTTCCTTGTCTAAATTGTCTTGGTACCTAACAATTGCCATAACTCAAAACATTCTTGTTGTATTGTAG TATAGACCCTATACTACAAAAAAAATTGATCAGGAAAGATTATTCAAAACCTTTCTTTCTTGCTTGGTTTCCTACACAAA AATTATTGCTTGGTGTGTAATCAAGCCATCAAGTCAGCCTCCCTGATATGTTTCAATACCTGCAAACTTCTCATTGGGAT TATTTGCTCCTGCATTTTCAATCTCATTTGCTCAAGCTTAAGCACATGACATAGATGTATCAGCTGATATCAAAAGGGAA GATTTCTGAGTTTTGCTAATGGCTATTCATCATGGTCTACACCGCCGTCTGTTGCTTCACCATCCAAACTTAACTGGTCC AGGTAGCAGGAATTGGTTCACTGGTGACACCAACATTCTGTTTATCTTGGCAGCTTTGCTTTTTGTACTTATATTTACTC TGGTTTTCCACTCCATTGTATGTTGCGCTCTAAGATGTAGCCGCAGGTTTGCTTTTGAAACCGCAGATGAGGCAGTAGCT CGCTTAGCCTCAAAAGAATTAAAGAAGAATGCATTGCATCAGATCCCTATAGTTGTTTATGGTTCAGGTAGTACAAGTAG TAGTCTTGTAGCCACAGATTGTTCAATTTGCCTTGGGGAATTTATGGATGGAGAAAAAGTTAGAGTGCTACCAAAATGTA ACCATGCGTTCCATGTAAAGTGCATAGATGCATGGCTGCTCTCACACACTTCTTGTCCTAACTGCAGACAGTCATTGCTT CAACCTTAGCTTTAGCTGTAGTTGCTGCTGCAGGAACAACTCACCATGTACAGAATGCCTTAGGACGAGGCCTTTAGCTC AAGCTGTGGACGATGTTGGCTAATTGTAAATTCAGGGATTAAAATTGCGGTTGCGACTGCTTTGTGGAATTGCAGATAAA TGCAGGTTGGCAACAATGCCGATGTGGGGAGTCAAAAACCTTTTACGTCAGTGCTGCAATTGCGGTCAACCACAATTTAA AACCCTGGTAAATTGCGATTTTACTCCTTGACCGTCAGAGAGTGAAGATGCACTAGAATTCTAGAAAGAAGAAAGGGATG AAAAAATGGAGACTAGTGGCTTTGAGTTTGGAATTCATAATGTTTAAAGTGTACTTGTATGGAATTCATAATGTTTAAAC TGTATGCAGCATGCAGGATTGAAGATATATATTAGTGTAGAAAAAACTGCTGGGTGATGATTCAGATTCTATCCTGTGTT TGTGCATGTTTTTCTGACATAAGAAATAGTGCTAAATCTTGAATGTTTGTTGTTGTGAAAGGGAAGTGATACACAACTTG TTGGATGCTTTTGTTGAAATTTTGTCACCAGAAAATGAAAGAGGAAAAATATGTCATTGTTAATGAATGACTAATTTAAA CTCAGTTTACTTTTTCCCCCTTTTCTCTTTATTGCATCACTATAGCACTTGGTTCATCTGAATTGAGCTCAAGGGGACTT TGGAAGTAAAAGTTGTTAATGTATATTTAAATAGATTTTGTATATTTAGTTCATGATAAACATTTTGTTTGTTGAACTAA CTAAAGTTATTATCAAGTATCAGAATGGAATGTGTCCTGGCAATCATTGTCAGATAATCTGATATCCCAGGAAAGATTAA TTGTCTATTTGCTTTGCATCCCAAAGCGGACACTGAAGCTCTTTTCCCCTTCCATGTGGGTTGCATCTTCTTTGTTGAAG GGAAACCTACATTGTTAGGATTGTAGAACCGTCAACAACAAGATAAAGGAAGAGTAAATAGGAATATTTTTGTATATTGA AACTGAAAAATAAACAAGAAGAGAGAGAGGAATAAAGGGATACGAAAACAATTCTAACGGATAAGAAGAAGTGTTGTGAA ATAGCGGTTATAGCGCTATAGCGTAGCACTTTGAGGGTTCACCGTTGTTCCATAATTTCCCGCTATTATCCGCAATTTTT CGCTATGAGAATTGAAATAGCAGATTTTTGGCTTTATTTGAAGGAGAAATCTCTTTACAAACT
CDS sequence (LotjaGi1g1v0307300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTATTCATCATGGTCTACACCGCCGTCTGTTGCTTCACCATCCAAACTTAACTGGTCCAGGTAGCAGGAATTGGTT CACTGGTGACACCAACATTCTGTTTATCTTGGCAGCTTTGCTTTTTGTACTTATATTTACTCTGGTTTTCCACTCCATTG TATGTTGCGCTCTAAGATGTAGCCGCAGGTTTGCTTTTGAAACCGCAGATGAGGCAGTAGCTCGCTTAGCCTCAAAAGAA TTAAAGAAGAATGCATTGCATCAGATCCCTATAGTTGTTTATGGTTCAGGTAGTACAAGTAGTAGTCTTGTAGCCACAGA TTGTTCAATTTGCCTTGGGGAATTTATGGATGGAGAAAAAGTTAGAGTGCTACCAAAATGTAACCATGCGTTCCATGTAA AGTGCATAGATGCATGGCTGCTCTCACACACTTCTTGTCCTAACTGCAGACAGTCATTGCTTCAACCTTAG
Protein sequence (LotjaGi1g1v0307300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAIHHGLHRRLLLHHPNLTGPGSRNWFTGDTNILFILAALLFVLIFTLVFHSIVCCALRCSRRFAFETADEAVARLASKE LKKNALHQIPIVVYGSGSTSSSLVATDCSICLGEFMDGEKVRVLPKCNHAFHVKCIDAWLLSHTSCPNCRQSLLQP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 32 | 32 | - | – | |
PANTHER | 28 | 154 | 127 | 9.8E-56 | – | |
PANTHER | 28 | 154 | 127 | 9.8E-56 | – | |
TMHMM | 33 | 55 | 23 | - | – | |
Phobius | 33 | 58 | 26 | - | – | |
Phobius | 59 | 156 | 98 | - | – | |
Gene3D | 65 | 155 | 91 | 1.1E-21 | ||
SUPERFAMILY | 91 | 155 | 65 | 8.08E-21 | – | |
SMART | 104 | 155 | 52 | 3.5E-4 | – | |
CDD | 107 | 150 | 44 | 6.03729E-16 | – | |
Pfam | 107 | 150 | 44 | 2.2E-14 | ||
ProSiteProfiles | 108 | 150 | 43 | 12.312 | ||
SMART | 108 | 149 | 42 | 3.0E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0307300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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