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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0321500 |
| Transcript ID | LotjaGi1g1v0321500.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | E3 Ubiquitin ligase family protein; TAIR: AT5G63970.1 Copine (Calcium-dependent phospholipid-binding protein) family; Swiss-Prot: sp|Q8RX26|RGLG3_ARATH E3 ubiquitin-protein ligase RGLG3; TrEMBL-Plants: tr|G7JC45|G7JC45_MEDTR E3 ubiquitin-protein ligase RGLG2-like protein; Found in the gene: LotjaGi1g1v0321500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:77220411..77226341) extracted from Lotus japonicus Gifu genome v1.2.
AAGAGAGTAGCCACCACGTCTAACCATTAAAATATTACTTACTACACAATAATAAAAAACAATGGTCATGGTCATTACCC CTCTCTTCTCTCCTCAACAAAGTTTTCAACTGCACCACCCTCAAACTTCAGAAAAACCAAACAAAGCAAACCAACAACAA GGTCACCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAGCAAATCAGAGACAATCAGGATTATAGGATTCTCAAT CCTTGTATGTGTTTTTTTGGAAAGATAAGGTGATTTTGGTGTTACTTTTATATGCAGCTGACTATTATTGACTAGTTCTG GGCTTCTTATTTAACTTGTTATGGTAGATTTTACTTGAGAAAACATCATAAGGAAGTTGTATGCTGCTCAGTTTTTGTTT CCTTTCTTTTTATTTTTCCATTAACAGGATTGAGCTGTGATATTCTGGTGCTGTGATTTTTTTATCCTACTGTATTCATT TATTTATTTATGTTGATATTGGTGAAAGCAGGACAGTCATTATGGGAAATGCAGAGTCAATGGATGAATCTCAAGATAAT TTTTACCAACAATCCCCTTATTATGCTGGGAGCTCAGTTGTGGATAACAGCTATCATCAATCCTCTTCTTATGCTGGGAG TTTGGATGATACTACTATTACTACCCATAATCAACACTCTTCTAATGCTGGGAGATCTGTGAATACTCGCCATCAGCAAT CTAAACACATAGCTGACAATTTCAGCTCATTGGATCAGGTTTTCACTGCTTCTTGTGCTCGGTGAAGTTTTAGTCTTTAA CTCTCCAAGACTCCAAGTGTAGTCACCATTTGTGAGCTACATTGAATGGTTTCAAATTGCAGTCTGCAACTGCAATTGTG GCCGCATTGGCATCAGGGCCACAATTGCGATCGCATCAACCTGCATTTATCTGCAATTCCGCGACGCAGCGGCAACCGTG ACTACAACCACAATTTAAATTGTATAAAACTTTTTGGTAGAAGCTCCATGCTTATAGAAGTTATGTGACATTTTCAGGTT GTTTCTGCTCTCAGAGAAGCTGGTCTGGAATCTTCAAATTTGATACTTGGTATTGACTTCACCAAAAGCAATGAGTGGAC AGGTAATTATTCCTTTCAAATATGGAATTATTGTACATGCTTTATATCCATGAGTGTAGAGAATCACACCTTGATAATTG TAGGCAAGCACTCGTTCCACAGGAAAAGCCTTCATCGTATTGGAAACACTCCTAATCCGTATGAGCAAGCAATCTCCATC ATTGGCCGTACTCTGTCTTCTTTTGATGAAGATAATCTCATACCGTGTTTTGGATTTGGGGATGGTGAGTAGATGTTTCC GACTTTAGAGAAGATAAAGGCTGTTGTGTTTTCTCTTCTGTTAATTATTGTGAATTTACTTTTGCAGCTTCTACACATGA TCATAATGTGTTCAGCTTTTATAATGGTGATAGATTTTGTCAAGGTTTTGAGGAAGTACTTTCACGCTACAGACAGATTG TTCCACACCTGAAATTGTCAGGTTTGTTTTACAAAATTATCTTCCTTTCTGGCTAGATTTTTACAGTTTTACTAGAAGTA TCTGTCACAAATGTATTTGAATTTTTTCTACAAAATAGCTTACCATAGTTGTTCTAGATAGATAGAATTATATTATGGTT TACTGCATATCATGATTTTAAAATTTCAAATGCCTCTGAACATAGGATCTGTTGGGACCTAATCCTTGTTGAGCACAATG ATTGAGGTTGAGCTGCTGGTTCTAGACCAGTCTGATGCTATGCTAAATTGCTTATTTTGTACTTCATTATTGGCTTACAT AAACTTGAAGAGTTCTTTGACTGTAAACACTTCTGATTTACTACTCGTAGAGACATTTCCCAAATTATAATTGTAATACT TTTCCTTTATACTCAGTTGTGGATATTGCTTGTTTGAGGGTTTGTCAAAGCTCCTTCTAAGGTTAAGTTTTTTGTCTGTC TAGTGGTACATACTAGGATTTACACGCTCAAGATTTTTTAAAATAAATAGCCATATATCGAAATTTTGAAGGTAGCTTAG AGTTTATAAAATAAGCAGTATGCTATCTGAAACTCTGAATAAATATTGAATCTGTGCACCTTATTTGTTAGTCTTCATTT CTTATTATGATTGTATGCTGACGGTGATATGATTTAATTGTGAAAACTCGCTCTTTTTTTCTATAGGTCCAACATCATTT GCCCCTGTAATTGATGCAGCCATTGACATTGTGGAAAGGAACAATGGTCAATATCATGTTCTTGTCATTATTGCTGATGG ACAGGTTTTATCTATTCTTTTTCGCAGTTCTTTTCGTGACATGAGTTGATTGTTTATTCCTAGCTCTCTTTTCCTTATTC TAGAGTGTCTTGTTTTTTCTTCCTAAGGTTACTAGAAATCCAGATACACCACATGGAAAGCATAGTCCACAAGAACAAGC AACCATTAATTCTATCATTGCTGCAAGGTAAAGCAATTTTCTTATAGTCTTTTGCCGTTGTTTATCGTATCTGTCTTTCA TGTGGTGATTTTCTGATTGTCAGTCACTATCCTCTCTCAATTATTTTGGTTGGAGTTGGAGATGGACCATGGGATGAGAT GAAGAATTTTGATGATAACATTACTGGGCGCTTATTTGATAACTTTCAGGTACTTATACTTGAACATTCAATATTGTCTG CTTTATGGTAACTTTCACCTTTGATATTGGAGTTAGAAGGCCAGGAGTTTGGCATATTAACGACAGTGATGATATTGTGT CAGCTAATTCCAAAACCAAGATCAGATGTGTGATGTGTCTTTTGTCTCTAATTTATTGGACATTAGTGAAAGACACTATG TATAGTTCTTGTTTATATTATTTGGTTTCAAAGCCGGAGCATGTTCGGATCTCTAATTTGAAATGTTTCCAATGATCTCG AGGTTTGAGATTCTTGTTTATATCATTCGGTATCAGAACTTGCGCGGGTTTGAATCTTCAAACCTTCCTTAAGATGGAGA AAATGGTATGCCCAAAGGGTATGCATATTGGGTTTGTGGATCTAGTGGCCCATGCCCAATAGGGAATAGCCTGTTTTTGA TGCAGGGTGTTATGGGTCAAATTCTAGTATTATGAATTTTCTTCTGCTTTTATTGATGAAAATGATATATTTTCTACTTT GTTTTCCTTTTGATTCCTTTAGTTTGTGAACTTCACAAAGATCATGTCTGAGAACACAGAAGCATCAAATAAGGAAGCAG AATTTGCACTTGCTGCCCTAATGGAAATTCCATTTCAGTACCGGGCAGCCCAAAATATACAACTTACCAAGTAAGGCATG GACTAAAGGCTTCTCTTTCTATATTCTAGATATATTTACTGAGTGTTGAAACTTGATTCATTGATGCAGTAGAGACCCAG ATCATTATCAACATAAAAGGCCTCTCCCTCCACCTAAGGAAGTAACAGATTATGATAATGCAGTCACAGCAATTCCACAC ATGACAAACTTTGAATCAGTAGAACCAACAGCTCCAGATGTTGTGGAACCAGTATGTTTACTTGCCCCTTGTTGGTATCT TTCTATTCCTATAGATTCATATTGAGATCACTAAGCAATGAGATAAACATATTTCCCTTGTTCAAGGTATGCCCGATTTG CCTAACGAACCCGAAGGATATGGCTTTTGGATGCGGTCATACGGTAAGTCGATTTATTGAATCTATTTTGTTTAATGCTT TTGTAGATCTATAGTAGGCAGTCTTACCTTGCATTTTTGCAAGAGACTGATTTCAAGGCTCAAACCTGTAACCACAAAGT CACATGACAACAACCTTACTGTTGCACCTAGACTCGCCTCTTTCATTGGGAAACCAATCTCTAATAAATTTGTTCATAAA AATTAACAAATGGCAGAAAAAGCTTTTCATTTTGACCCACCAAGGGGAATTGCCATGCAAAGAAGAAAATTGCATATTCA TGTATCCTGCATGTAAAAATGTCTTTGGTGTTCATTTACCTTGTTTTTTATGCAGACTTGCAAGGAGTGTGGTGCGACTT TATCATCATGCCCTATTTGCAGGCAGCAAATTACAACTCGCCTGAGATTATACACTTGAGCAAGATTTCTTGTTGATTTA TTATGTATCATTATATTTCCACCATTAATGGTGGACAATAGCAATATCCATTATATCATTTCTTAACAATTCACCTTACG AATGAGATGTACAGAAATGTTGTGTTTGTGTAACACTGCTTAAACAAAATGCATAGAAAAAAATTTAGGTAAATTTTACC CAAATTATGTTACTACTCATTTTGAATTCCTATAATTTACCCACAGAGCTATACACTATGTCCTGAAACATTTATGTTCA AGTCCTAAACACGATAATTAATCAGAATTTGTCTTCAAAGTTGGAGATAAACACATATTGTAAAATGTGAAAAATCATGA AAGATTCTAGGGAAGTCTTGAAAGCAAGGGGGATTTAAAGGGGGACGTAGACGTTGGGAATGGATTGTGTACTTAGTTTC CCATTTGTGTCAATACAAATGGAAAAATACAAATATGAATGCAGAAGTAAGATTTTATCAGAATTTTAATGTGGATCAAC ATTGAGCTCAATCAAAATTTAAACACACTTTGTGTATTTGATTTCATAGTATATTGTCATATGAAAATTTGATGTCCATA TTTCAGTCAATAAGTCTGGTTCTTGGATAAATATCACCCTAAATTACCCAAAAGTCCAAAAAGTCCTTGATCATTGCCTT CAACACTATGTTTTGTATCCATTGAAAATACAAAATGCTCAAACTCTCAATTCAAATTTTTTTATGCGATCTATTATCAA TGCTACCTGCAAACCATTATATCACTTATGGATTATGTGTTCTGTTCAAATTATGTTTTGCCTTTGGTTCAATTATTTTC ATGGTTATTTTGTTTTGTTGATTTTGTATATGTAATGTTAGGGATTTTGGCCATCGAGAGGAAATGAAGTTATTAAATTC ATTTGATATGATGGTGTAACTATATAACCCAATTATGTAAATTACTTTGTGTAAAATTTTGTTGGTTGACTATTATATTT TACCGTTACTTTTAATTAGCTCTAAGTTATAAGTTTAAGAGGCTTATATTCTTATTTTTAACTTTTCATTTATTTGCTCA CTCGAATTTCCAACTAAGACTGTCGTATGCAAAGAACATTGGTTTTTATTTAAAACCATTTCTCACCTTTATCTTCAAAA GAACTCTTCATATCAAAGGAAACAGATCCAATAAAAGCACCCCCATTAACTCTTTTGATATTCATTTTTTTTCATCAACC AAATCCTCATCAATTTTTTAACATCAAAATAATCGTAACTACTGCTTACAGGAACAAATTTACTTTCATCCAATAATTAA AAAAGATAATTTGAGAACCAATCTGATGTCAATATCCATTAGAGAGCACACTTAAGTTCACAGAGTCTTTCTATTTATCA AAATGTAAGTACTCTTGTGGTGACATTAGTAGCTACTGTCGCCTTCCCAGAATCACGAGGTCACATCCTGCACTACATGA TCAAGCAAAATCATAACTAAACTACCCTATGCAGAAAACACACCTTCTGCTATATGTACTTTCTCTCCAAAATGTAGAAG TTCCATATCTGTGACAAAATCTAGAAGTTCCATCTGTCCAATTGCAACCTTGCTTCAGCCATATCTTTCTGCGCTTTTTT ACGTCGATAAAAAATGGGACAATCCCGACTGCAATGCCAATAGTGCAGCATAAATCAGTGGTAAGTAAATGCAAGGAAAA TGTAAGTTTATGTAAATTTTCTCATAAAAACAGATAGGGATGTGATTGATTAACACTGTCATATGGCACTCTTAAAATAA AAAAATTGTAC
CDS sequence (LotjaGi1g1v0321500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGGAAATGCAGAGTCAATGGATGAATCTCAAGATAATTTTTACCAACAATCCCCTTATTATGCTGGGAGCTCAGTTGT GGATAACAGCTATCATCAATCCTCTTCTTATGCTGGGAGTTTGGATGATACTACTATTACTACCCATAATCAACACTCTT CTAATGCTGGGAGATCTGTGAATACTCGCCATCAGCAATCTAAACACATAGCTGACAATTTCAGCTCATTGGATCAGGTT GTTTCTGCTCTCAGAGAAGCTGGTCTGGAATCTTCAAATTTGATACTTGGTATTGACTTCACCAAAAGCAATGAGTGGAC AGGCAAGCACTCGTTCCACAGGAAAAGCCTTCATCGTATTGGAAACACTCCTAATCCGTATGAGCAAGCAATCTCCATCA TTGGCCGTACTCTGTCTTCTTTTGATGAAGATAATCTCATACCGTGTTTTGGATTTGGGGATGCTTCTACACATGATCAT AATGTGTTCAGCTTTTATAATGGTGATAGATTTTGTCAAGGTTTTGAGGAAGTACTTTCACGCTACAGACAGATTGTTCC ACACCTGAAATTGTCAGGTCCAACATCATTTGCCCCTGTAATTGATGCAGCCATTGACATTGTGGAAAGGAACAATGGTC AATATCATGTTCTTGTCATTATTGCTGATGGACAGGTTACTAGAAATCCAGATACACCACATGGAAAGCATAGTCCACAA GAACAAGCAACCATTAATTCTATCATTGCTGCAAGTCACTATCCTCTCTCAATTATTTTGGTTGGAGTTGGAGATGGACC ATGGGATGAGATGAAGAATTTTGATGATAACATTACTGGGCGCTTATTTGATAACTTTCAGTTTGTGAACTTCACAAAGA TCATGTCTGAGAACACAGAAGCATCAAATAAGGAAGCAGAATTTGCACTTGCTGCCCTAATGGAAATTCCATTTCAGTAC CGGGCAGCCCAAAATATACAACTTACCAATAGAGACCCAGATCATTATCAACATAAAAGGCCTCTCCCTCCACCTAAGGA AGTAACAGATTATGATAATGCAGTCACAGCAATTCCACACATGACAAACTTTGAATCAGTAGAACCAACAGCTCCAGATG TTGTGGAACCAGTATGCCCGATTTGCCTAACGAACCCGAAGGATATGGCTTTTGGATGCGGTCATACGACTTGCAAGGAG TGTGGTGCGACTTTATCATCATGCCCTATTTGCAGGCAGCAAATTACAACTCGCCTGAGATTATACACTTGA
Protein sequence (LotjaGi1g1v0321500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MGNAESMDESQDNFYQQSPYYAGSSVVDNSYHQSSSYAGSLDDTTITTHNQHSSNAGRSVNTRHQQSKHIADNFSSLDQV VSALREAGLESSNLILGIDFTKSNEWTGKHSFHRKSLHRIGNTPNPYEQAISIIGRTLSSFDEDNLIPCFGFGDASTHDH NVFSFYNGDRFCQGFEEVLSRYRQIVPHLKLSGPTSFAPVIDAAIDIVERNNGQYHVLVIIADGQVTRNPDTPHGKHSPQ EQATINSIIAASHYPLSIILVGVGDGPWDEMKNFDDNITGRLFDNFQFVNFTKIMSENTEASNKEAEFALAALMEIPFQY RAAQNIQLTNRDPDHYQHKRPLPPPKEVTDYDNAVTAIPHMTNFESVEPTAPDVVEPVCPICLTNPKDMAFGCGHTTCKE CGATLSSCPICRQQITTRLRLYT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 37 | 67 | 31 | - | – | |
| PANTHER | 46 | 422 | 377 | 7.7E-225 | – | |
| PANTHER | 46 | 422 | 377 | 7.7E-225 | – | |
| CDD | 70 | 320 | 251 | 4.03658E-111 | ||
| SMART | 91 | 294 | 204 | 8.4E-10 | ||
| SUPERFAMILY | 92 | 275 | 184 | 1.39E-12 | ||
| Gene3D | 116 | 300 | 185 | 3.1E-5 | ||
| Pfam | 116 | 329 | 214 | 8.5E-75 | ||
| Gene3D | 363 | 423 | 61 | 9.6E-13 | ||
| Pfam | 377 | 417 | 41 | 1.3E-9 | – | |
| CDD | 378 | 422 | 45 | 2.69434E-24 | – | |
| SUPERFAMILY | 378 | 418 | 41 | 8.64E-8 | – | |
| ProSiteProfiles | 379 | 412 | 34 | 11.471 | ||
| SMART | 379 | 411 | 33 | 0.0014 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0321500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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