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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0334000 |
| Transcript ID | LotjaGi1g1v0334000.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Dual specificity phosphatase family protein; TAIR: AT5G23720.3 dual specificity protein phosphatase family protein; Swiss-Prot: sp|Q75QN6|DPHS1_ARATH Dual specificity protein phosphatase PHS1; TrEMBL-Plants: tr|A0A151R609|A0A151R609_CAJCA Dual specificity protein phosphatase 3; Found in the gene: LotjaGi1g1v0334000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:79256020..79258606) extracted from Lotus japonicus Gifu genome v1.2.
TTTCAGGTTGATGCTGAATCTTCTAAAGAATTGGAACAATGGAACGAAATGCTTAAAAATGATGCTATCAAATTATGCCA GGAGAACAATTTCAATACAGGATTTTTTGAGGGTAGTGATAACAACACTGTTTCTGATGCATGTGAACTGAAGGTATCTC AGATTGAAATAGTATGCAGAATTCATATATTAGAGTCATTTCATTTATTGGGGATCCATATTCACAGAAAGCATTTACTC CATTTACTTCCAGGTCAGACTTGAGCATATCCTTGAGAGGATTGCATTGATATCTGAGGCTGCAAATACAGAAAGGCCAT CTGCTGTTACAAATAGTCTTTTTATTGGTGGAGCACTAGCTGCAAGATCTGTATACACACTGCAACACTTGGGAATCACC CATATTTTGTGTCTGTGTACTAATGAAATTGGACAGTCAGATTCTCAGTTTCCCGATCTATTCACATACAAAAATTTCTT CGTAAGTCATTTTCTCGTGTCTAATTTTTACCCCAGTTATCCTATTGATTTGTTTGCAGAGGTCTAGTTTGACTTCCTTC GTGATGTCTTTTCACGCATATCCATTATGATAACTTCTGGATTTTCCAATAACTATTTAAAGGACCAGTCATCCACAAAA GTTCAAGTTTTTAGATGCATGCATGAGCTAGAAGTATAGACAAAACACTGCTTTGGTTTCAGTGCTTAAGTTTAATTTAA TTATGAAGAATGGAAGTAGAAGTGTTGACTAATTGATTGTAGAAATTCTAATACTAAGAGCATGTTTGGATACACGCTTA TTGGAGCTTATCTACTAGAAAAAGCACTAAGTAAGCTCCAACAAGTGCTCTTTGGTTTCCATCTAAACGGGTACCATGTC TGCAAACTATCATTGCAAACGCTTGAGATGTTAGGTGTCACTGCCAGCTCATGAATGATTTTTTATCTCTAATTTAGTAT GCATACTCTACAACCTTTATATAAATTGTTTCACTTAAATTTTTATTTTTTATAGAGCCCAATGAGGCAATGACTTCAAT TGATAATGTAGCCAATCCCACAAAACAGGATAAGGCTTGGTTGTTCTGTACCCTACAACTACAGCTTAATCCAGACTTGA CGCTTTTGCTGCATTAATAACATACTTAATATATTGATCCACTATGGACAAATTGAAATGGATTCTTCCCTTTTTTTCCT GTGTTTTCTGCTGTTCACTTATCGTATTTGATCACCTTTGGCTGGTGTATTTACTTGTTAAGGCTTGCTTCATCATTTTC TCGCTTATCCTTTAATGTATTTGCTATTCTGTACGAGGAGTTATGCTTGTTCTTATGCATATTTACAATAATCTTTTCTG TTATTAAAGATACCAAAAGCACTCTTCAATTCTGCTCAGGAATAAATGCTCATATTATTTCCATTCATCTCCCATTTGAA CAGATCTATGACAATGTGGATTCCAACATCAGCAGCATATTTGACGAAGCTTGTGATTTTATAGATTATGTTGAGCAAAT AGGTCAGAGAGTTTTAGTCCATTGCTTTGAGGGGAAAAGCAGAAGTGTCACTTTGGTCCTAGCTCACCAGATGCTCAGGA AGTAAGTGAAAAATAAAAACAGTTTTAGGTTAAATTGAAACTAGTGTTTCTATGAATCCAGTTTTCCTTAACCAATCATT GTATCAACTGTAATTAAATAATTGAATCTTAATGACAAATTATATTATCATATAGGTTCTTTCAATCAGTAAACTATTTA GTTGTATATTACTCCCTCCGTTCCTTAATATAAGAACCAAGCAACCACTTCACACCCTTTAAGAAATTTATCTAATCTAG ATAATTGCATTAAATTTGTTCTCAATTTATATCAACTTTCCAAAGTTACCCTCTACCTATATTATTCTTAATTTATATGC ATCATTAATGCTATAGCAAGTGGAAAGAGAGAGAAACTCAATTAAATAAGGGCATTTTTGTCCAAAAATAATTAATTTTC CACAAACTTCCAAGTTGGTTCTTATAAAAAGGAACAAGTGCATTTTCTATTTGGTTCTTATAAATAGGAACGGAGGGAGT ATCAATTATTTACATGGTTAGGTGATATAAAGCAATCTAAGTATCATTCAGTTTGTAGAATACAGGAAAATCACAAGTTT ACTTTCCTTGAGAGTTAGAGTATTACTGCTAGTAGCACCCTGTGAACTGAAAGCTTTTGGTTGCAGGAATTTCACCTTAT TAGAAGCATGGAATGCTTTGAAACGAGTTCACCGTCGAGCACAGCCTAATGATGGTTTCGCAAAGGTATTACTGGAACTC GATCAGAAACTGCACGGGAAGGTTTCAATGGAGTGGCAGCAGCGGAAACCAATGATGAGGATTTGCCCCATATGTGGCAA GAATGCTGGAATAAGCAGCAGCTCACTTACGCTCCATCTTCAGAAATCACATAAAAGGCTATCATCAGGGAGTGTAGACA GTGCCATGACAATGGAGATCCAAAAGGCATTATCAGCTTTGAAGATAAGCCGTGGTGGGAGTGTCAATCCCTTTCAAAAG CAGTCTCATGCAATGGTAGATGAATAG
CDS sequence (LotjaGi1g1v0334000.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTTAAAAATGATGCTATCAAATTATGCCAGGAGAACAATTTCAATACAGGATTTTTTGAGGGTAGTGATAACAACAC TGTTTCTGATGCATGTGAACTGAAGGTCAGACTTGAGCATATCCTTGAGAGGATTGCATTGATATCTGAGGCTGCAAATA CAGAAAGGCCATCTGCTGTTACAAATAGTCTTTTTATTGGTGGAGCACTAGCTGCAAGATCTGTATACACACTGCAACAC TTGGGAATCACCCATATTTTGTGTCTGTGTACTAATGAAATTGGACAGTCAGATTCTCAGTTTCCCGATCTATTCACATA CAAAAATTTCTTCATCTATGACAATGTGGATTCCAACATCAGCAGCATATTTGACGAAGCTTGTGATTTTATAGATTATG TTGAGCAAATAGGTCAGAGAGTTTTAGTCCATTGCTTTGAGGGGAAAAGCAGAAGTGTCACTTTGGTCCTAGCTCACCAG ATGCTCAGGAAGAATTTCACCTTATTAGAAGCATGGAATGCTTTGAAACGAGTTCACCGTCGAGCACAGCCTAATGATGG TTTCGCAAAGGTATTACTGGAACTCGATCAGAAACTGCACGGGAAGGTTTCAATGGAGTGGCAGCAGCGGAAACCAATGA TGAGGATTTGCCCCATATGTGGCAAGAATGCTGGAATAAGCAGCAGCTCACTTACGCTCCATCTTCAGAAATCACATAAA AGGCTATCATCAGGGAGTGTAGACAGTGCCATGACAATGGAGATCCAAAAGGCATTATCAGCTTTGAAGATAAGCCGTGG TGGGAGTGTCAATCCCTTTCAAAAGCAGTCTCATGCAATGGTAGATGAATAG
Protein sequence (LotjaGi1g1v0334000.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLKNDAIKLCQENNFNTGFFEGSDNNTVSDACELKVRLEHILERIALISEAANTERPSAVTNSLFIGGALAARSVYTLQH LGITHILCLCTNEIGQSDSQFPDLFTYKNFFIYDNVDSNISSIFDEACDFIDYVEQIGQRVLVHCFEGKSRSVTLVLAHQ MLRKNFTLLEAWNALKRVHRRAQPNDGFAKVLLELDQKLHGKVSMEWQQRKPMMRICPICGKNAGISSSSLTLHLQKSHK RLSSGSVDSAMTMEIQKALSALKISRGGSVNPFQKQSHAMVDE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 282 | 282 | 3.7E-173 | – | |
| PANTHER | 1 | 282 | 282 | 3.7E-173 | ||
| Gene3D | 38 | 211 | 174 | 8.6E-39 | ||
| ProSiteProfiles | 56 | 200 | 145 | 30.566 | ||
| SMART | 56 | 198 | 143 | 1.0E-22 | ||
| SUPERFAMILY | 56 | 201 | 146 | 1.07E-31 | ||
| CDD | 57 | 194 | 138 | 2.12302E-47 | – | |
| Pfam | 68 | 197 | 130 | 2.4E-21 | ||
| ProSiteProfiles | 114 | 177 | 64 | 10.076 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Phosphoprotein phosphatase activity | Catalysis of the reaction: a phosphoprotein + H2O = a protein + phosphate. Together with protein kinases, these enzymes control the state of phosphorylation of cell proteins and thereby provide an important mechanism for regulating cellular activity. | ||
| Biological process | Protein dephosphorylation | The process of removing one or more phosphoric residues from a protein. | ||
| Molecular function | Protein tyrosine/serine/threonine phosphatase activity | Catalysis of the reactions: protein serine + H2O = protein serine + phosphate; protein threonine phosphate + H2O = protein threonine + phosphate; and protein tyrosine phosphate + H2O = protein tyrosine + phosphate. | ||
| Biological process | Response to abscisic acid | Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an abscisic acid stimulus. | ||
| Biological process | Dephosphorylation | The process of removing one or more phosphoric (ester or anhydride) residues from a molecule. | ||
| Molecular function | Phosphatase activity | Catalysis of the hydrolysis of phosphoric monoesters, releasing inorganic phosphate. | ||
| Biological process | Cortical microtubule organization | A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of structures formed of microtubules and associated proteins in the cell cortex, i.e. just beneath the plasma membrane of a cell. |
Expression pattern of LotjaGi1g1v0334000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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