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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0335000 |
| Transcript ID | LotjaGi1g1v0335000.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ubiquitin-conjugating enzyme E2, putative; TAIR: AT5G50870.1 ubiquitin-conjugating enzyme 27; Swiss-Prot: sp|Q9FI61|UBC27_ARATH Ubiquitin-conjugating enzyme E2 27; TrEMBL-Plants: tr|I3SXJ9|I3SXJ9_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0335000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:79406361..79410057) extracted from Lotus japonicus Gifu genome v1.2.
AACAACTCTCATTCATGATTCACCTCACCACCTTAAACTTCACATAAACAAAAGTGCAGGTAGAGAGAAAGGCAAAAATA GAAAAAATAAAAAATAAAAAGATTCACCAAAAAAAATATTAAAATAAAAAAAGAAAATAAAAAAAGGAAAATCACTCGTC ACTCTTCACAGTAGCTTTATTCTTGTTTCTCTCTTCTGCACCGCGAAGTTGAGGTGAAGAGGAAGCGTTCTTCATCTTCT TCTTCTTCTTCGTTGTTCCAATTTGATTCAAGGTGAATCAACCACACACACACACACACACGCAATATCGCAATTTTTCT CTATTTGTTCTCTGTTTGTGAATTTCTGTGGCTTAGGGTTTTGCAATTGGTATTATCATCAGATTGATTGAAGATGATAG ACTTTGCTCGCGTGCAGAAGGAGCTTGTGGAATGCAGCAAGGACGCAGAGGGATCCGGCATCCGTGTCGTCCCTAAAGGC GACACCAGCCTTGTTCTCTTGCTCGGCACCATTCCTGGCCCTGTTGGGACTCCCTATGAAGGGGGTGTTTTTCAGATTGA TATCACATTGCCTGGTACATTTTCTTCTTTGATCCGAAGAACCTGTTTGATTTGGTGGATTAGGGTTTGGTTTTTATTGG TGTTGATTTGATTTGTTTAATTAATTAATGCTTCCGTTACTGTTTTTTTGTTGCAGATGGGTACCCGTTTGAACCACCTA AGATGCGGTTTACCACCAAAGTCTGGTAGGAAAGCCTTGTCTTTTTTTGCCCCCTTTTTGTGATTAATGAACTGTTATGG ATTACAGAATAGAGTGGTTAGGTTTGATGTAATTAAATGTGTTGATCTTGTGTGTATTTCATTAGTTGTCTACCTCTGTG TATGGAAAATTGGGAATGTAAAAGTAAGAAAACGTTCAATGCCAGGATTTTCTGTTTCAGTTGAAATGTTTTTTATTAAT GATCACAAAAATTAGCACAGTTTGGATTAGCTTATAGCTTTTGGGAGCTTTTCAGCTCAGATAATAGGTATTTGGTTCCC AATTTTATGAAAAAGCCCTTACAATAGGTCTAACTTTGAAGGGAGTTTATAAAAAATTTGAGTTGGGGAAGCTGATTTCA ACTTTTATGCAAGAAGACTCGAGTCATTGCAAGATTGTTTCAACTTTTCTTTTTCTATAGTGTTTGTTTTAAAGTTTATC CAAACATGCTCTTTGTTTCCTCAATTCAAGAATCTACAAAGGGAGTTTCACCATTTCCTTTATATATTATTGAGAACAAA GGAACAAAAGAAGGTGATATTTTTGTAATTATTAGTGAAAACATATCAATTGAAATTAAAATTGCTAACAAACCAAATAC ACCTGTTGTTTGACATGCTGTGACTTTTAATGTAATCAATAGATAGATAGGGTTGGGATTTGATTGTAAAATTAGCTCTT CTAAAACACATATGACATCCTTTATTCATGGATGATACAGACAGTTTTACAAGGTTTAATGCTAGGCTATCATCTGTTTC AATTTTATTATTGATGCCACTGCAAGTTCATCACAATCTTCTAGAGAGGCTTAATATGCTGGCCTTTTTCAATTTTCATA AAATAGAGTATGGTATTGTGGCATTTTGCCTCAAGATATGGATATGATGAGCTCTGTATTTTAGTACATCTCTTGTGTAC ACCTTCCTTTCACTATCTTTCTTTGATTATTAAGCTTGAAAAACATAATTCTTGGCCTGTTTTGATGTTCTCTCAAGACT GTAGAAGTGTGAGTTTGCCCCAGGTTCTATGGCAAACTCAAGGTTTCAATTGCCTCAGCCTCATGTGTTCTGGCTTCTGA AAAAGCTCGTGATGATGGAGTTCATTCTACCTTAGCATTTATGAACGAGCATTTATTTATGCATAGCAAATATGGCATGT ATTGCAATGGCAAAATATCTGTTCAATTGGTTAATGTGTGGATTTGTGGTGTATGTTAATTGTTGAAGGCACCCTAATAT CAGCAGCCAGAGTGGAGCTATTTGTCTGGACATCTTAAAAGACCAGTGGAGCCCAGCGCTCACTCTGAAGACTGCCCTTC TTTCTGTGCAAGCACTTCTCTCTGCTCCTCAGCCTGATGATCCTCAAGATGCTGTTGTGGCGCAGCAGGTCTGTTGTGAC TCATTCTCTGATGTAGTGTGTCTTTATGTTTGTGAAATGTTTTTCGATTCATGTGCTTTGTGTGTGTAATTGCCAATGCT TAGTGTATTGAATAATTCGAAACTCGCCTCGGTTTCTGGTAAATCAACATATATTAATATTGCTTATTTCTTTCAAGTTC TTCTGTCAATCTAAAGCGGTGTCTGTCTACGGACAATGCAGTATCTGAAAGACTATCAAACATTTGTTAACACTGCTCGC TACTGGACTGAAAGTTTTGCAAAGGCATCATCTCGTGGGATCGAAGATAAGGTATGACTAGCTTGTTGCTTTTATGTTAT TGGAATGACGATGCACATTATTGAGCATATTTTTCTCAGTGTGACATCTTCTTAACATTCAGGTTGGACACTTACTTTCT TACATGAGTTTGTTTTGGATACATGGGCTGTTGAGTTTAATGTTTCACACATGCATCTTGTTTCAACACTTCAGTGAAAA TTTAATAATGATCTAGTGATCTAGGTGGTATTATTATACTAGACAGTGCATTTTATGATAAATTTATACGAAAATGATAA ACATGGAAGTTTCAACCATAATCAATCAATACCAGTTAGGTTTTGAAATTGAAAAATGACATGCATAACCAGTTTGAGCA TATTGATTATACTTTTGATATGGCTTATCAAAAAAAAGATTATACTTTTGATATGGTAAGTGCGAAACAATGAAACTTCA GCTACGTTGGTAATTATTTTAATTTCCAATGCTAATGCATCAATTATGACACTATTTACATGAGGTAGTTTTATAACATA TGTGATTTGATACAGGTACAGAAACTGGTTGAGATGGGATTTCCTGAAGCTCAAGTAAGGAGCATTTTGGAATCTGTTGG AGGTGATGAAAACTTGGCTCTTGAAAGGCTGCTTTAGCTCTTAAAATGTTGGAACCAAAGAGACAAAAAGTGTTAATTGA AATATAAATATATAATCTATTTAAGGACGCCGTATAGTGTTTTCATTTTACACATCCTTCTTTTTTTCCCCCTCTTTTGG AAGTTTGGTACTTGACATTTTCCTAATGTTATTATACTAGCAGGGATGAAATTGAATACCTTATTAGCAAGGTTTCTGCT TCATGTATGGATTATTTAATTTTGATCTTGCTGTATTATTAAGCTGGTTTACATAACTGAAGTGGATCAAAGGGTTTGCT TGAGAGATGAAAGCCAATAGACTGGTGATTCTGGGAGAAATTTGCCTTGTCTCTTCTAATAAAGACTTACTCTACTAATG TAAAAAACAGTCAAGATTATCATAGTTGACTATTGAAATTGCAATAATGTTTTGTGCACATATCTTTTCCACCTCCACCT CACTTGAATAAGAAGAGAAATGAGAGTAATGGGTGATATGATGTGTGATGTGACAGGAAATGTAGAGAGAGATAGAAAGA AAAATGTGTGGAAATGAGATGGAAGAGAAAGTGAGGTGTATATAAATCATTACTCTTGAAATTGTGATGAAATTACATGC ACATAATAAGTGTCTCA
CDS sequence (LotjaGi1g1v0335000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATAGACTTTGCTCGCGTGCAGAAGGAGCTTGTGGAATGCAGCAAGGACGCAGAGGGATCCGGCATCCGTGTCGTCCC TAAAGGCGACACCAGCCTTGTTCTCTTGCTCGGCACCATTCCTGGCCCTGTTGGGACTCCCTATGAAGGGGGTGTTTTTC AGATTGATATCACATTGCCTGATGGGTACCCGTTTGAACCACCTAAGATGCGGTTTACCACCAAAGTCTGGCACCCTAAT ATCAGCAGCCAGAGTGGAGCTATTTGTCTGGACATCTTAAAAGACCAGTGGAGCCCAGCGCTCACTCTGAAGACTGCCCT TCTTTCTGTGCAAGCACTTCTCTCTGCTCCTCAGCCTGATGATCCTCAAGATGCTGTTGTGGCGCAGCAGTATCTGAAAG ACTATCAAACATTTGTTAACACTGCTCGCTACTGGACTGAAAGTTTTGCAAAGGCATCATCTCGTGGGATCGAAGATAAG GTACAGAAACTGGTTGAGATGGGATTTCCTGAAGCTCAAGTAAGGAGCATTTTGGAATCTGTTGGAGGTGATGAAAACTT GGCTCTTGAAAGGCTGCTTTAG
Protein sequence (LotjaGi1g1v0335000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIDFARVQKELVECSKDAEGSGIRVVPKGDTSLVLLLGTIPGPVGTPYEGGVFQIDITLPDGYPFEPPKMRFTTKVWHPN ISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPQPDDPQDAVVAQQYLKDYQTFVNTARYWTESFAKASSRGIEDK VQKLVEMGFPEAQVRSILESVGGDENLALERLL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 164 | 163 | 2.9E-71 | – | |
| PANTHER | 2 | 164 | 163 | 2.9E-71 | – | |
| Gene3D | 2 | 152 | 151 | 2.4E-56 | ||
| SMART | 5 | 151 | 147 | 1.2E-62 | – | |
| ProSiteProfiles | 5 | 140 | 136 | 39.24 | ||
| CDD | 6 | 146 | 141 | 6.28281E-62 | ||
| Pfam | 6 | 145 | 140 | 1.1E-43 | ||
| SUPERFAMILY | 6 | 151 | 146 | 9.13E-51 | ||
| ProSitePatterns | 77 | 93 | 17 | - | ||
| SUPERFAMILY | 132 | 193 | 62 | 1.06E-7 | ||
| ProSiteProfiles | 156 | 193 | 38 | 12.185 | ||
| Gene3D | 157 | 193 | 37 | 4.2E-8 | – | |
| Pfam | 158 | 192 | 35 | 5.6E-7 | ||
| CDD | 158 | 193 | 36 | 8.52834E-15 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0335000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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