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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0369600 |
| Transcript ID | LotjaGi1g1v0369600.2 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | PHD finger alfin-like protein; TAIR: AT5G20510.1 alfin-like 5; Swiss-Prot: sp|Q5XEM9|ALFL5_ARATH PHD finger protein ALFIN-LIKE 5; TrEMBL-Plants: tr|I3T3M7|I3T3M7_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0369600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:84778775..84779440) extracted from Lotus japonicus Gifu genome v1.2.
ATGATCAATGATCTTCCAACAGTATTTGAGGTTGTTACAGGAATGGCCAAGAAACAAGGAAAGGAAAAGACATCATTTTC TAATCATAGCAGTAACAAACCCAAATCAAACCCTAAGGTATGAAGTTTGAAAATCAAACTAACCATTAGCAGGGACAGTT TGCTGAGGGCGTAGCTTTTAGTCAACGTAGCTTTTTTTTTTACAAACTTTTAATTTGAATGAATGCAGACAATATTGTGT TTACTTAAGTGGTGTGTTACATTGTTTTCTAGATGCTAAAGTTTGAACAGGAAGTAAATGTAAAATTAGGGACCTAAAAG TCTTCTGTCTGGAATAAGATCTGGCACCCAATTAATAATTTTTTCTTCATAATCCCTTTTGTTTTGGCAACTTCAGAAAG GTTCTGAATCTCAAGTGAAGTATTCAAAGGCAATGCCATCAAAGGACGAGGATGAGGATGGTTTGGAAGAGGAAGATGAA GATGAGCATGGAGAGACTCTGTGTGGGGCGTGTGGAGATAGCTATGCAGCTGATGAGTTCTGGATCTGCTGCGACATCTG TGAGAAGTGGTTCCATGGAAAATGTGTGAAGATTACCCCTGCAAAGGCTCAGCATATCAAGCACTACAAATGTCCATCTT GCAGCAACAAGAGAGCTAGAACTTGA
CDS sequence (LotjaGi1g1v0369600.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATCAATGATCTTCCAACAGTATTTGAGGTTGTTACAGGAATGGCCAAGAAACAAGGAAAGGAAAAGACATCATTTTC TAATCATAGCAGTAACAAACCCAAATCAAACCCTAAGAAAGGTTCTGAATCTCAAGTGAAGTATTCAAAGGCAATGCCAT CAAAGGACGAGGATGAGGATGGTTTGGAAGAGGAAGATGAAGATGAGCATGGAGAGACTCTGTGTGGGGCGTGTGGAGAT AGCTATGCAGCTGATGAGTTCTGGATCTGCTGCGACATCTGTGAGAAGTGGTTCCATGGAAAATGTGTGAAGATTACCCC TGCAAAGGCTCAGCATATCAAGCACTACAAATGTCCATCTTGCAGCAACAAGAGAGCTAGAACTTGA
Protein sequence (LotjaGi1g1v0369600.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MINDLPTVFEVVTGMAKKQGKEKTSFSNHSSNKPKSNPKKGSESQVKYSKAMPSKDEDEDGLEEEDEDEHGETLCGACGD SYAADEFWICCDICEKWFHGKCVKITPAKAQHIKHYKCPSCSNKRART
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 127 | 127 | 4.1E-65 | – | |
| PANTHER | 1 | 127 | 127 | 4.1E-65 | – | |
| MobiDBLite | 16 | 72 | 57 | - | – | |
| MobiDBLite | 25 | 49 | 25 | - | – | |
| SUPERFAMILY | 64 | 125 | 62 | 4.65E-18 | ||
| Gene3D | 67 | 128 | 62 | 1.9E-24 | ||
| ProSiteProfiles | 72 | 124 | 53 | 9.472 | ||
| CDD | 74 | 124 | 51 | 5.93289E-27 | – | |
| SMART | 74 | 122 | 49 | 1.6E-8 | ||
| ProSitePatterns | 75 | 121 | 47 | - | ||
| Pfam | 75 | 124 | 50 | 1.9E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0369600.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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