Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0376900 |
| Transcript ID | LotjaGi1g1v0376900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Lectin; TAIR: AT5G65600.1 Concanavalin A-like lectin protein kinase family protein; Swiss-Prot: sp|P93535|LECS_STYJP Seed lectin; TrEMBL-Plants: tr|I3SRF2|I3SRF2_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0376900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:85626144..85628827) extracted from Lotus japonicus Gifu genome v1.2.
AGAGAATAAGAGTTAAAGTAATATCACGCTGTGTTTGGTGATGAGGACTGGCACTTGAACCATGTTACGCGCAAGGTGCT GCTGGATGTGTCGACATGGCATGGAGCCATGGGAAGAAAACTCTCGGCTGGGGACAGTAGCACCAGTGCAGAATGCTTAT ACTACCTCAAAGTCGACGGTAGCTGGAATCTGTCCATAGAGATGATGGGGGAGCGGAGGTCCTGCTTGCTCCTGACGGTT CATGGTGCGCCGCTGTCTCGGAGAGTCGCCGGAATGGCTCTGCGTTCCGGGCAGAATTATGGGCTGTGGAACTTGGGTTG GCCCTTGCGTGGGAGATGGGAATTCGCAGCTTGAGCTGCGCGTCGGATTGTCTTCAGGCCGTAAGCATCCTCCAAGCACC GACGTGGCTGATTCCTTCTGGGATCGAGAGGCAATTCTGGACGTTAGGGCGTGGTTTCAGCGGGATTGGCGAGTGAAGCT CAATCATCTGCGAAGGGAAAGGAACAACGCGGCGGATTTCTTCGCAAGAAAGGCGGCGCGAGAAGGGACACAACATCAGA TATGGCGACAACCACCATCTGTTTTTTATGATTTGTTATACTTAGACGCCTCGGCGTAGTTTCTTTGTTTCGTTTAATTT TCCTCTGTAACAAAAAAAAGTATCATCACACAAAAACGCACAAGAACGTACGCGGTGGGGGGGGGGATCTATTAAATTCA ATTGCAAGCGAGCACTCAAACCAGCAAGAAAATTTGTAGCATTAATAGCTTCTTTAAAAATATGGCGAAGGTGAATGTCT TAATTTCGTGCAAGAAGGAGGTGAATATCCATGAATATACTAGTAAATACATGAAAATGGAACTGAGTGAAATGTCTTAA TTATATTTCTTGATGCCCTTCCGCGAGAGTAACTAAAGACTCATCCTCATGGCTCTGTTAGCAAAGGATCGCCTCCCTGC AAACCTGAATAAAAACCGCTAGCTAGGCAATTTCTGAAAATTGAAAATATAATTAAAGCATGATTTTAAATTAATAACAA CATGGATTATGAAAATATAATTAAAGCATTATTAATAACAACACTTTTTTAACTTTTCTTCTTAACACATTTTTGGAAAA TGTTAGCCTGGCTTGTATAAATAGATAACGTTGGGTTATCCACTTCACCCATCCTCGTGCATCACAATTAATATTCCACT TCAACTAATTAAAGTCCATGGCTAGCTTCCGATCTTCTCTCCTGCGGCCATTAACACCCATGTTCTTTATAAACTTCTTG ATGTTCCTCTTTTTTCTAAACAAGGTGACCTCAACAGACACTCTCTCTTTCTCTTTCACTGAGTTCGTGCCAAACCAACG AGACTTAATCTTCCAAGGTGATTCCCTTGTTAGCTCAACAGGGAGGTTGCAACTCACCCAGATACAGGACGGCCGCCCAA TCTTTAACTCGATCGGCCGAACTCTCTATGCGGCCCCGGTTCACATTTGGGACAGCAAAACAGGCAACATGGCCAGCTTC GTCACTTCCTTCTCCTTTATCATTAACGCACCCGACAGGTCCAAAACCGCTGATGGCCTTGCCTTCTTTCTTGCACCGGT TGACACCCAGCTCCAAAATCCTGGTGGTGGACTACTCGGACTCTTCCCCAACCAAAATGAAAGCAAGTCATACCAAGTCG TCGCGGTTGAGTTCGACACCTACTTGAACCCTTGGGATCCCAGCTTTGAACACATTGGAATTGATGTCAACTCCATTCAA TCAGTGAGAGGTGTATCGTGGGAATTGGAGAGTGGCCAAGTAGCTAATGTTGCCATAAGCTATCAAGCTTCCAACAAACT CTTGACCGCCACTTTGATCTATCCTTCCGGTCAGGCCAAAATCGTCTCTTCTGTTGTAGACTTGAAGAGTGTCCTTCCTG AGTTTGTTAGAGTTGGTTTCTCAGCTTCCAGTGGACTCAGTCAAAACTTTGTTGAATCACATGATGTTCTTTCATGGTCT TTTGAATCCAAGTTACCACCTGGTAGCAAAGGTGTTGCTTCCAATAACGTGCATGTTGTTTCCAGCTCTGGACTCGATTC CATCTAGTATATATAGTTTTGAAAATGTTATGTGAGTCCATGTGACCGAAAATAAAACTACCTTAATAAGACCTGCAACA ATGGTTATCTGTGCACCGTTCATATGTTTCACAACAGTATATAAAGTAATGTCACAGTTTAATGTAATGCGCTTGTATGT TGTACAATAGAAGGGAAAATGTTTGGTACACACCTCTCCACCTCTCGAAATTTAAGAAGGAAAAAAAGTGAAATGAGTGA TATGATACGTGATGTGATGGAATGCAAGAGAGAGATAGAAAGAAAAACAAGGTCTAGAGGTGTGAGAATATCAGAACTCC AATAGAAGAAGTGATACAAATACTTGAGAGACCGGCGCTAATGAGGCAAAAGTTCTCTACTGTACATGAAATTTTGTGTC AACATTGTAAGGATGGCAGCAGGTCTGGTTGAGGTCGGATTTTGCATTTCTCAAACCCAAACCCGAACTCTCATACCCAC CCTAAACCCGTCGGGTTTCGAGTTTACTCAAACTCGTTGTAACCTCAAACATACGTTCTAACCTAACTTAATGCATATAC TTTTTTGCAAAACAAAATGCAACTTATATTATTTTATTGTAAAA
CDS sequence (LotjaGi1g1v0376900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTAGCTTCCGATCTTCTCTCCTGCGGCCATTAACACCCATGTTCTTTATAAACTTCTTGATGTTCCTCTTTTTTCT AAACAAGGTGACCTCAACAGACACTCTCTCTTTCTCTTTCACTGAGTTCGTGCCAAACCAACGAGACTTAATCTTCCAAG GTGATTCCCTTGTTAGCTCAACAGGGAGGTTGCAACTCACCCAGATACAGGACGGCCGCCCAATCTTTAACTCGATCGGC CGAACTCTCTATGCGGCCCCGGTTCACATTTGGGACAGCAAAACAGGCAACATGGCCAGCTTCGTCACTTCCTTCTCCTT TATCATTAACGCACCCGACAGGTCCAAAACCGCTGATGGCCTTGCCTTCTTTCTTGCACCGGTTGACACCCAGCTCCAAA ATCCTGGTGGTGGACTACTCGGACTCTTCCCCAACCAAAATGAAAGCAAGTCATACCAAGTCGTCGCGGTTGAGTTCGAC ACCTACTTGAACCCTTGGGATCCCAGCTTTGAACACATTGGAATTGATGTCAACTCCATTCAATCAGTGAGAGGTGTATC GTGGGAATTGGAGAGTGGCCAAGTAGCTAATGTTGCCATAAGCTATCAAGCTTCCAACAAACTCTTGACCGCCACTTTGA TCTATCCTTCCGGTCAGGCCAAAATCGTCTCTTCTGTTGTAGACTTGAAGAGTGTCCTTCCTGAGTTTGTTAGAGTTGGT TTCTCAGCTTCCAGTGGACTCAGTCAAAACTTTGTTGAATCACATGATGTTCTTTCATGGTCTTTTGAATCCAAGTTACC ACCTGGTAGCAAAGGTGTTGCTTCCAATAACGTGCATGTTGTTTCCAGCTCTGGACTCGATTCCATCTAG
Protein sequence (LotjaGi1g1v0376900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASFRSSLLRPLTPMFFINFLMFLFFLNKVTSTDTLSFSFTEFVPNQRDLIFQGDSLVSSTGRLQLTQIQDGRPIFNSIG RTLYAAPVHIWDSKTGNMASFVTSFSFIINAPDRSKTADGLAFFLAPVDTQLQNPGGGLLGLFPNQNESKSYQVVAVEFD TYLNPWDPSFEHIGIDVNSIQSVRGVSWELESGQVANVAISYQASNKLLTATLIYPSGQAKIVSSVVDLKSVLPEFVRVG FSASSGLSQNFVESHDVLSWSFESKLPPGSKGVASNNVHVVSSSGLDSI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 15 | 15 | - | – | |
| Phobius | 1 | 32 | 32 | - | – | |
| TMHMM | 7 | 26 | 20 | - | – | |
| PIRSF | 9 | 272 | 264 | 8.2E-97 | ||
| Phobius | 16 | 27 | 12 | - | – | |
| PANTHER | 21 | 267 | 247 | 7.1E-89 | – | |
| PANTHER | 21 | 267 | 247 | 7.1E-89 | – | |
| Phobius | 28 | 32 | 5 | - | – | |
| Phobius | 33 | 289 | 257 | - | – | |
| Gene3D | 33 | 272 | 240 | 3.1E-77 | – | |
| SUPERFAMILY | 34 | 267 | 234 | 1.63E-75 | ||
| CDD | 36 | 266 | 231 | 2.47493E-87 | ||
| Pfam | 36 | 267 | 232 | 1.5E-64 | ||
| ProSitePatterns | 155 | 161 | 7 | - | ||
| ProSitePatterns | 233 | 242 | 10 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Carbohydrate binding | Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates. |
Expression pattern of LotjaGi1g1v0376900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…