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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0377000 |
| Transcript ID | LotjaGi1g1v0377000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Lectin; TAIR: AT5G10530.1 Concanavalin A-like lectin protein kinase family protein; Swiss-Prot: sp|Q39527|LECR_CLAKE Lectin-related protein; TrEMBL-Plants: tr|I3SCP3|I3SCP3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0377000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:85640332..85642491) extracted from Lotus japonicus Gifu genome v1.2.
TTCTTTTTCTTTTATTTATATATCTCTAATGTGTGTGAGTGTGAACTAATCATGTCCATGAAATAGTCAAGACATATGTT TAGTCTGGCTATTATAAATACGAGTTTTGATTTATTCATACTTTTATTTCTCTTCCGTATTATTTTCATTTACTTTTTTT TAATTCTTCCAATCTCTCTTTTTATTTTATCACATTACAAGTCAGATCTCTATTTTTTTTTTCTTCCTTTTGCACGTGAT ATAAGTAAACTTATTCTATAAATACATAACTGGGGCTCCATTCATCCTCGTGCAACACAATATCCCACTTAAACTAAATC AAAGCCATGGCTAGCTTGCGATCTTGTTTCCTTCCAATGCCCATGTTGTTCTTAACTACCTTGTTATTTTTTATGAACAA AGTGGTGGACTCAACAGAGTCCCTCTCTTTCTCTTTCAGCGAGTTCATCCCAAGTCAACAGGACTTGGTCTTCCAAGGTG ACTCCTCGGTTAGCTCAACAGGGAGGTTGCAACTCACCGTGGTCAAGGACGGCCGCCCAATTAGCTCCACGGGCCGAGCC CTATATGCGGCCCCGGTCCGCATATGGGACAACAAAACAGGCAACGTTGCAAGCTTCGTCACTTCCTTCTCATTCATCAT CAACGCACCCAATACAACCGCTGATGGCCTTGCCTTCTTTCTCGCACCCGTGGACACCCAACTCCAAAACTCCGGTGGGT TCCTCGGACTCTACCCCAACCAAGATGAAAGTAAATCATACCAAGTTGTCGCGGTCGAGTTTGACACTTTCTTGAACTCT TGGGATTCGACAACTCCACACATTGGAATTGATGTCAACTCCATCAAATCATTGATAGTTGGATCGTGGGATTTTCAAAA TGGCCAAGTAGCGAATGTTGTCATAAGCTATCAAGCTTCAACCAAACAATTGACTGCCTCTTTGGTCTACCCTTCTGGTC TGGCCAGAATTATCTCTGCTATGGTCGACTTGAAGAGTGTTCTTCCAGAGTTTGTCAGAGTTGGTTTCTCAGCTTCAAGT GGAGCCTTTGTTGAATCACATGATGTTCTTTCATGGTCTTTCCAATCGAAGTTGCCAGCGGGTAGTAAAGGTGTTGCAGC TTTCAACAAGGTGCTACGGACTTGATTAGCTAAGTCTACTTTGTATGTATGTATACGTGATGCTCGCATGTAATAAGGAT AAGATATATGATATCTTACAAAATAAATAAGGCTTAAATTTGTCTATGGTTTCTTTTTTATAAGCCATTTTTAAATCACT TGAACTCAAATACAATGAGAGAGAAAAAATTAGGCACTTAAACAAATGAAACAAATGAGTTGAAATTTCTATATTTTATT TATTAATTTATTCCCAACTCACTTATATGTTTAAATGATGGGTTACTGTTGAGCTAAAATCCTTAACACCACAATCCTCG ACACCGATGCCAGGAAGACGAGTTCTCGACAAAAAGGACCATGGTGAGACTTGAGGTTCGTTAGGTAACACTCCCACAAA GTCAAGGAAGTAAAAGAAAATTCGACAAGTCAATAAACTCGGCTAAGGAAGCAGTTACCTAGTGATGGGCAATTACAAGC ACGTGCGTGTACCCACGATGCCACGAATGGCAACGGTTACCCACGACCCAAGACCACCCACGTGGCAATTAAAATCACGT GCTCAGAATCTCCGGTTGAACGTGGGGTAAGGCGCCAAAATTCAAACCCACTAAGCCCATACACATTGAAGAAAAACCGC CAAGAACGTGGGGAAGGAAACAACGTTATAAATAGAAGAAGCCGCGTCAGGAAAGGGGTTCCCAACTCAAACTCTGAAAA TTCACCAGAAAGCTCTAATGTCCGCATCAATGAGACTCAAGGAGCAAGGTGTGATGATGGAGGAGTACGTTGCAGAACCA GTCTTTTAGTTTTCTTGCATTAAGCTTGTTAATTTCCAGTTTCTTTGTGCAATTTCTTGTCGAATTCTACGTTTCTTGCA GTTTTCATGTTACTTTGATTTATGTGACTTCATGTAATTGATCTTTACTTAATGAAATCCAGTTTTCTTTCGAACCGATC ATCACTGTCGAAAAATACTAACTCACACACAACACTTTGGCAAGACGTTTTCTCAAAAGGACCCCGAATCTAAACTTCCT
CDS sequence (LotjaGi1g1v0377000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTAGCTTGCGATCTTGTTTCCTTCCAATGCCCATGTTGTTCTTAACTACCTTGTTATTTTTTATGAACAAAGTGGT GGACTCAACAGAGTCCCTCTCTTTCTCTTTCAGCGAGTTCATCCCAAGTCAACAGGACTTGGTCTTCCAAGGTGACTCCT CGGTTAGCTCAACAGGGAGGTTGCAACTCACCGTGGTCAAGGACGGCCGCCCAATTAGCTCCACGGGCCGAGCCCTATAT GCGGCCCCGGTCCGCATATGGGACAACAAAACAGGCAACGTTGCAAGCTTCGTCACTTCCTTCTCATTCATCATCAACGC ACCCAATACAACCGCTGATGGCCTTGCCTTCTTTCTCGCACCCGTGGACACCCAACTCCAAAACTCCGGTGGGTTCCTCG GACTCTACCCCAACCAAGATGAAAGTAAATCATACCAAGTTGTCGCGGTCGAGTTTGACACTTTCTTGAACTCTTGGGAT TCGACAACTCCACACATTGGAATTGATGTCAACTCCATCAAATCATTGATAGTTGGATCGTGGGATTTTCAAAATGGCCA AGTAGCGAATGTTGTCATAAGCTATCAAGCTTCAACCAAACAATTGACTGCCTCTTTGGTCTACCCTTCTGGTCTGGCCA GAATTATCTCTGCTATGGTCGACTTGAAGAGTGTTCTTCCAGAGTTTGTCAGAGTTGGTTTCTCAGCTTCAAGTGGAGCC TTTGTTGAATCACATGATGTTCTTTCATGGTCTTTCCAATCGAAGTTGCCAGCGGGTAGTAAAGGTGTTGCAGCTTTCAA CAAGGTGCTACGGACTTGA
Protein sequence (LotjaGi1g1v0377000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASLRSCFLPMPMLFLTTLLFFMNKVVDSTESLSFSFSEFIPSQQDLVFQGDSSVSSTGRLQLTVVKDGRPISSTGRALY AAPVRIWDNKTGNVASFVTSFSFIINAPNTTADGLAFFLAPVDTQLQNSGGFLGLYPNQDESKSYQVVAVEFDTFLNSWD STTPHIGIDVNSIKSLIVGSWDFQNGQVANVVISYQASTKQLTASLVYPSGLARIISAMVDLKSVLPEFVRVGFSASSGA FVESHDVLSWSFQSKLPAGSKGVAAFNKVLRT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_GRAM_POSITIVE | 1 | 11 | 11 | - | – | |
| Phobius | 1 | 29 | 29 | - | – | |
| SignalP_EUK | 1 | 29 | 29 | - | – | |
| Phobius | 1 | 13 | 13 | - | – | |
| PIRSF | 6 | 262 | 257 | 1.3E-92 | ||
| Phobius | 14 | 22 | 9 | - | – | |
| PANTHER | 15 | 258 | 244 | 3.5E-86 | – | |
| PANTHER | 15 | 258 | 244 | 3.5E-86 | – | |
| Phobius | 23 | 29 | 7 | - | – | |
| Gene3D | 30 | 263 | 234 | 1.4E-72 | – | |
| Phobius | 30 | 272 | 243 | - | – | |
| SUPERFAMILY | 31 | 262 | 232 | 1.96E-73 | ||
| Pfam | 32 | 258 | 227 | 2.0E-64 | ||
| CDD | 33 | 256 | 224 | 1.63736E-91 | ||
| ProSitePatterns | 148 | 154 | 7 | - | ||
| ProSitePatterns | 226 | 235 | 10 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Carbohydrate binding | Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates. |
Expression pattern of LotjaGi1g1v0377000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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