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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0380300 |
| Transcript ID | LotjaGi1g1v0380300.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Homeobox protein knotted-1, putative; TAIR: AT5G25220.2 homeobox protein knotted-1-like 3; Swiss-Prot: sp|O04136|KNAP3_MALDO Homeobox protein knotted-1-like 3; TrEMBL-Plants: tr|V7ATS5|V7ATS5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0380300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:86191427..86195512) extracted from Lotus japonicus Gifu genome v1.2.
TGTATCTAATGACATATGTACTTGTGTGATTTTATAATTTTTTTTTACAATGTCAATAATTAAAGTCTTGTTTTAAACTC ACTTACTCAACATAATGAAAGCAGTTTTCCTCACAAATTTCTCTAGTGAGTCACCGGGAAACCAGTGCTTGTGATAAATA GAAAACCCGCCTCATCTCATTTTCCATCCAGTCTCCTTTTTAACCATTTATACACACACATACACGCTCAGTGTAGCTCA CTGCACCCTCTTTTCCCTCCCTTTTCTTCTCCCTCTTTCTCCTAGCTCACTTCTTTGTCAAACACGCCATTCACCAAACA CAAACACTTTCTCCATTTCCTCTTCCTACCGTTATCAATGAACCAATAGTCACTTACACACACACAGAGATTGAGAGAGT GAGAGAGAGAGAGAATCAGTTTCTCTCTATGGCGTACAACCACCACCACCACCTCTCTCAAGACCTCCCAATTCACCATT TCTCAGACCAACAACAACAGGACCACCATAACCACCACCCTCTATTGGATGACCCCACCACCAAACCTAACTCCTCCGAT CCTCACCAAACCGCACCCAATTGGCTCAACAACGCCCTTCTCCGCCCTCACTACACCACCACCACCACCACCACCACCAA CGCCAACACGAACTTCCTCAACCTCCAAACCGCCAATTCCGACTCCACCGCCGCCCAATCCTCCTCCCAGTGGCTCGCCC GCCCTGTTCTACACGGCAAGGTTATCGACGGCGGCGCTGATATGTCTCACGACTCTACCGGCGGCGAGAAGACCGAGCCG GTGACTGAGGGCGGAGCTGACGGTGGTTTGATGAGCTGGCAGAATGCTAAGTGCAAGGCGGAGATTCTGTCGCACCCGCT GTACGAACAGCTGCTTTCTGCACACGTGGCGTGCTTGCGGATCGCCACGCCGGTGGACCAGTTGCCCAGGATCGACGCTC AGCTGGCGCAGTCGCAGAATGTGGTGGCCAAGTACTCCGCCTTTGGACACGGCTCTCAGGGTATGCTTGGCGAGGATAAG GAACTCGATCACTTCCTGGTATATTGAAATTTTCTCAATTTCTTCCCTTTTCAGATTAATTAAGTTTTTGCTTTCTGGGT TGCAATTGTGTGTTGAATTTGACATTTGAAATCTATCATATGCTGCATTTTGGCCATGGAATTTGTCTTTTTTAGTTATT GACTTTAATTTGTCTACACATCCTTAGATATTTGCTTTACAGTAGGTTTTTCATTCATAGCTAGTTTCTTTCAAATTTTG ATTCCTGTTTTCAATTTCCTTTCACATGCTTTTTGTGATTCATTTTGTAAGCATGTGCCCTGTGCCCAGAAATCCTTGCC CACAATCTAGTGATATTTTGAACAATTTTCATGCAACTATTTTGGGCTGGGTCAGATTATTCCATACCCTTATGGATCAT CATTGTATCTAGAGTTCTGTTCTTTATTTTGTCATGGTGTGTAATTCCAGCTATGGTGGAGAAAGATGGCTCGCTTGTGC TAGATTTTTTTTTTCTTTCTGTGATACAGTTGCAATTTTGACATTTTCCTGATTGTTTCTGCAGTCACACTATGTTTTGT TGCTCTGTTCTTTCAAAGAACAACTTCAACAACATGTCCGGGTCCATGCAATGGAAGCAGTGATGGCTTGTTGGGAGATT GAGCAGTCTTTACAAAGTCTGACAGGTGCAATAGTAGTCTTCTTTTGTTGATTGTTACATTTTAACAACGTATAAGGTCG GTTGCTTGAACAAATGGAAACATAACTTGCTCTAAGGGTTAGTTCCTATCATTTGATGTTCCCTCAATTATGTTCCTGGT ATCAATGAAAAACCTGTAATTCACCCTCCCTAACACAAACAAGGTATTAGTTGTTTAGGAGTAATTTCCCCATAGCTACA AGGGCCATCTTGGTGTTTCCTTAAAATTTGGCAAAATTGTGGGTAGCTTTATATGTAAAATTGTATAAAAAAACCTTTTT TTTTTCCTCCAATTGTATGAGTACTAATGTGATAGTTTTTCCCACATGCTACATGATAACAGGAGTTTCACCTGGGGAAG GTACAGGAGCAACAATGTCTGATGATGAAGATGACCAAGTAGACAGTGATGCCAATCTGTTTGATGGTGGTTTGGACGGT CATGACAATATGGGATTTGGCCCTCTTGTTCCAACAGAGAATGAGAGGTCCCTCATGGAGCGTGTGAGACAGGAACTAAA GCATGAATTGAAACATGTAAGGGTTATAAAATCTCTCTTCATATAAGTTAATAGCTCTTAAAATATTGCTCGAGTCCTAT CATTTTAAATCTCTCATCACATGATCAACCTCAAATTTTTCGGTTGTGCAGGGTTATAAATCGAAAATTGTGGACATAAG AGAGGAAATCATGCGCAAGAGACGAGCTGGGAAACTTCCTGGTGACACCACCTCTGTCCTTAAAGCCTGGTGGCAATCAC ATTCCAAGTGGCCTTACCCTACAGTACGAACTCAATACTCTGCTAACATTTTGTGGAAACCCTTTTTAAGATTCAAAATA TGGTCATTCTTTGTGCATTTAGTGCATGTTTGGAAATCCTTCTAGTATTGATTCTAAAGCTATAATCAATTATGGGAGAA GCTTATTCGAATAGCTTTGAGTTTCAGAATTGATTTATGAGAAAAGAGAAACTGATCCAAACATGCTATAGCCTATAAGT CCACATGTTAGCGCAACAGTAAGCTTAGTGCATGTGGTTCTGAATTCAAGCTACTCCAAGAGACTTGCAAATGATATTTT CAAAGATAACATTACCTGCTGCCTCACTATTCACTCATCAATTTTTTTGGTTTGCTCATCTCAATCCTTGTCATGCCTTG CAGGAGGAGGATAAGGCAAGGTTGGTGCAGGAAACGGGTTTGCAGTTGAAGCAGATCAATAACTGGTTTATCAATCAAAG GAAGAGGAACTGGCATAGCAATGCTTCAACTTCTACTGCGTTGAAGAGCAAGCGCAAAAGGTATACATATATTCAAATAT TAAAATGAACTCCTTTTATGGACTTAAATTCACATGAGTCAGTCCTAAATTGAAAGAGCCAATGCAGGTCATAATAGTGC TGATGGTTACATATAAATGGAGAAAACCTCAAGACAAATCTCTGATTTTTTGTTGTCATGCTTTGCATGGAAGCAGATTC ATCGAAAGTCAATGAGCCAAAGTTACAGTTTTCTTAAGTTCAAGGAACAAGGTTAACAGAGATGATCGAGTTCCCACGGT GCAACAAAATCAGAGATTTCTATTAGGAGTTATATACAGAAACAGAATTGGTTAACTCCATGGATGTGTTTTAGTTACAT TGTAATGTTAAATGAAATATATATTGTAGTTAGGGGTTGTGGCCTGTGGGTGTACAGTAATAAACTGAGCATTCTTCCTT GAGTCTCAGTAATTTTGTTCTTGTTCTTAAATTGGGTATATTAACCTAATGGGAAAAGTTCTGGTGTTTTGATTGTTGTT GTATACAAATAAGAATATGAAGTTCATTCTGGAGTAGAAACAATATTAGCAAGTTAAGACCTTGTAGACTTCATTTGCCC CATTGACATGATGCTTCTTCAACTCATCGTAAAGTCATAATCATGAGATGGAACAACTTTCTCGGGTGAAAAAAATTAGG AGGGTGAAACAGAGTTCGTAAATTCTTATGACAATGCCTGTAGTCTGTTGACCTATTTACAGTTTGGAAAGCTTTGGGTG AAAAAGACATAACAGATGGAAATTAACCTTATGTTTTATCGGACTCTGCGGGAGTGTACTTTTTCTTTGTAGGAGTGTCA TCAAATCAAAATTTAACATTGAAAACACTCTTCATAGAAGTGCATTTTCTCTCTGGTCCCTCGTCCTTGAATTCAATGAT CATGAGTGACATTTGTCCTATGGTCTCTGTTTTGATGAGTGAAGGCAAGTAATACTAGTAACTAAATTACACATGCATGC TCCATGACCAAAGACACTAATTAGTCACTAGATTTTTTACATTTTCCTTAACTAACTATTACTCGTAATAAAACAATTTC AGGACG
CDS sequence (LotjaGi1g1v0380300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGTACAACCACCACCACCACCTCTCTCAAGACCTCCCAATTCACCATTTCTCAGACCAACAACAACAGGACCACCA TAACCACCACCCTCTATTGGATGACCCCACCACCAAACCTAACTCCTCCGATCCTCACCAAACCGCACCCAATTGGCTCA ACAACGCCCTTCTCCGCCCTCACTACACCACCACCACCACCACCACCACCAACGCCAACACGAACTTCCTCAACCTCCAA ACCGCCAATTCCGACTCCACCGCCGCCCAATCCTCCTCCCAGTGGCTCGCCCGCCCTGTTCTACACGGCAAGGTTATCGA CGGCGGCGCTGATATGTCTCACGACTCTACCGGCGGCGAGAAGACCGAGCCGGTGACTGAGGGCGGAGCTGACGGTGGTT TGATGAGCTGGCAGAATGCTAAGTGCAAGGCGGAGATTCTGTCGCACCCGCTGTACGAACAGCTGCTTTCTGCACACGTG GCGTGCTTGCGGATCGCCACGCCGGTGGACCAGTTGCCCAGGATCGACGCTCAGCTGGCGCAGTCGCAGAATGTGGTGGC CAAGTACTCCGCCTTTGGACACGGCTCTCAGGGTATGCTTGGCGAGGATAAGGAACTCGATCACTTCCTGTCACACTATG TTTTGTTGCTCTGTTCTTTCAAAGAACAACTTCAACAACATGTCCGGGTCCATGCAATGGAAGCAGTGATGGCTTGTTGG GAGATTGAGCAGTCTTTACAAAGTCTGACAGGAGTTTCACCTGGGGAAGGTACAGGAGCAACAATGTCTGATGATGAAGA TGACCAAGTAGACAGTGATGCCAATCTGTTTGATGGTGGTTTGGACGGTCATGACAATATGGGATTTGGCCCTCTTGTTC CAACAGAGAATGAGAGGTCCCTCATGGAGCGTGTGAGACAGGAACTAAAGCATGAATTGAAACATGGTTATAAATCGAAA ATTGTGGACATAAGAGAGGAAATCATGCGCAAGAGACGAGCTGGGAAACTTCCTGGTGACACCACCTCTGTCCTTAAAGC CTGGTGGCAATCACATTCCAAGTGGCCTTACCCTACAGAGGAGGATAAGGCAAGGTTGGTGCAGGAAACGGGTTTGCAGT TGAAGCAGATCAATAACTGGTTTATCAATCAAAGGAAGAGGAACTGGCATAGCAATGCTTCAACTTCTACTGCGTTGAAG AGCAAGCGCAAAAGGTCATAA
Protein sequence (LotjaGi1g1v0380300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAYNHHHHLSQDLPIHHFSDQQQQDHHNHHPLLDDPTTKPNSSDPHQTAPNWLNNALLRPHYTTTTTTTTNANTNFLNLQ TANSDSTAAQSSSQWLARPVLHGKVIDGGADMSHDSTGGEKTEPVTEGGADGGLMSWQNAKCKAEILSHPLYEQLLSAHV ACLRIATPVDQLPRIDAQLAQSQNVVAKYSAFGHGSQGMLGEDKELDHFLSHYVLLLCSFKEQLQQHVRVHAMEAVMACW EIEQSLQSLTGVSPGEGTGATMSDDEDDQVDSDANLFDGGLDGHDNMGFGPLVPTENERSLMERVRQELKHELKHGYKSK IVDIREEIMRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNASTSTALK SKRKRS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 405 | 405 | 3.9E-162 | – | |
| PANTHER | 1 | 405 | 405 | 3.9E-162 | – | |
| MobiDBLite | 20 | 55 | 36 | - | – | |
| MobiDBLite | 20 | 34 | 15 | - | – | |
| MobiDBLite | 35 | 55 | 21 | - | – | |
| SMART | 140 | 184 | 45 | 3.2E-20 | ||
| Pfam | 142 | 183 | 42 | 3.2E-18 | ||
| SMART | 196 | 251 | 56 | 1.3E-27 | ||
| Pfam | 200 | 250 | 51 | 4.5E-20 | ||
| ProSiteProfiles | 308 | 328 | 21 | 9.673 | ||
| Pfam | 308 | 329 | 22 | 4.8E-6 | ||
| SMART | 308 | 329 | 22 | 3.8E-4 | ||
| Gene3D | 327 | 403 | 77 | 8.4E-23 | – | |
| ProSiteProfiles | 328 | 391 | 64 | 11.888 | ||
| SMART | 330 | 395 | 66 | 5.7E-11 | ||
| SUPERFAMILY | 330 | 393 | 64 | 3.81E-16 | ||
| CDD | 331 | 392 | 62 | 1.00421E-12 | ||
| Pfam | 348 | 387 | 40 | 1.2E-17 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. |
Expression pattern of LotjaGi1g1v0380300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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