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LotjaGi1g1v0384400.2

Overview

Field Value
Gene ID LotjaGi1g1v0384400
Transcript ID LotjaGi1g1v0384400.2
Related isoforms 8
Lotus japonicus genome version Gifu v1.2
Description ATP-dependent RNA helicase; TAIR: AT5G11170.1 DEAD/DEAH box RNA helicase family protein; Swiss-Prot: sp|Q56XG6|RH15_ARATH DEAD-box ATP-dependent RNA helicase 15; TrEMBL-Plants: tr|I1JUD5|I1JUD5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0384400
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:86773908..86780448) extracted from Lotus japonicus Gifu genome v1.2.

GGAGGAATAAAAAAAATGGTGATTGTCGCGGCGCGGGTTTATAAAAGAAAGAGTCTCCATTCCATTCCAAATCTAATCCA ATCCCTCGACTCTATTCTCTCATTCTCTTTCTCATCGCCACCGTGTTCCGCCGTCTAGGTTTCGCTTTCCGCCGATTGTT TTTCATCTAACCAATTTACTTTGCAGACTCTTTTCACCACCGCACCGTAACCTTCCCTTCAATCCTTCACTTCACAGGTA TTCCTCTCCGCTTCCAAAACCCTAGATTCTCTCTCTCTCTCTCTCTCTAGGGTTAAACCCTAGCTTAACTTTTTGTTTGT TTTCTGGATATTTGTTTGAAGGTTTGATTGAATTGTTATGGTGATTTGCAGATAATGGCAGAAATTAAGGACGAAGGATA CGAGGAAGAGCTTCTCGACTACGAGGAGGAAGAAGACAAGGCCCTCGACTCTGCCGGAACAAAAGTCAACGGTGAAGCTA CTAAGAAGTAAGCTATTTCTTGTTTTTTCCTGTGTCTTGATTTGTTTCGTGAAATTATATTAGTTTAATGGTGCGTTTCT GTTAACAGCTTAATTAAGCTCGCATAAGCACTTATTCATAAGCTAATTTGAGAATCTGATTGAAATAATCTGAACATAGG TGGTAGGGAAGCAAAGCATATACAAACAGTTTATGAAAATAAGCTCAAAGCAGTTTATAGATAAGCCATAATATGTATAA GTGCTTATGCTAACTCGTTATGTCGAAACAATTGGACTTTAGTGCACAATATGTTGGTTTAGGACTTAAACATTTGATTA TTTTTTATATAATTAATCTCTCTTTCATTTGTTTTATGTAGGGGCTATGTTGGAATCCACAGTTCAGGATTCAGAGACTT TCTTCTCAAACCAGAGCTTCTTAGGGCTATTGTGGACTCGGGATTTGAGCATCCTTCTGAAGGCAAACTATCCAGCTATC TTAATTTACATTTTTTGTTGTTGTATAGGTTGCAAATAATATGATGTTTTTGTGATTCTAAAGATTTTATGGTTATTTAA ATTATTAGTATTTCAGAATAAGCAAATGCTAATGCCCTTTGTGCACTAATTGAGAAGACTTGAAAGTATTTTTCCAGAAA TATTGATCACACAGAAAATAGTTAACTAATGCATCTTGCATGTCTGACCATATTATCATTAACTATGAAGCATGGACATG GGGACTGGACATTTTCACGACAGATCTTCAATGTTTGAAATATATAGGTCCCTGAGGCATTGCTGCATAAATTCATGTGT ATATGTGTGCGTATGTGTGCATTTGTATTTGTTGATATATGTATGTTTGCATGTGTTTGTATAGGGACTTCATTAGTTGC CATTGCCAGCATTTGAGGAGTTAAACTCGAGTCTTGGCCCATTCATGCTCATGCATGGTTGTATTGTCAAGTTCAGCTCC TCTCACTAAATTTGTGCTGGTGTCCTTGTTGGTATTAGATATGTGTTGGACACTCCAACATCTCAAAAAGTGTCCGTGAC ATACACATATAGAAGCCATGTAGTTTTGTATGATGCTATGCTATTTAAGTATTTCTAAAATTTGATTAACTGAACTTATA ACTTTGTTTGACGTTTACTTTACAGGTAATACTTCTTCGACAATCTTGTTTTGGAGAACTTACATGCTTTGGTAATGGTA TCAAATCAGATTAAATGCGTCAGAAAGGTTTTGTTTTACTTATCACCACTTCCTTCGGCCCTGTTTTCTTTGCTTTATCA TCAGTGCAACATGAGTGCATCCCTCAAGCAATCCTTGGAATGGATGTAATCTGCCAAGCTAAATCTGGAATGGGGAAGAC TGCTGTCTTCGTTCTCTCGAGTTTGCAACAGATTGATCCCGTTCCAGGCCAAGTTTCTGCACTGGTTCTTTGTCATACAA GAGAGTTAGCTTACCAGGTAGTTATTTGGGGTTCAGTGCAAGAAAGTTAGGGAATTTAGTATTATAGTTGCTCTTGATTT AAGATGTGCAATCTCTTCTGTGCAGATATGCCACGAGTTTGAGAGGTTTAGCACCTACTTACCTGACCTCAAGGTTGCTG TCTTTTATGGTGGGGTCAACATCAAAGTTCACAAGGATCTGTTGAGAAATGAGTGCCCTCATATTGTTGTTGGAACGCCT GGAAGAATACTTGCATTGACTAGGGATAAGGACCTTTCTTTGAAGAATGTTAGGCATTTCATTTTAGATGAATGCGATAA GATGCTGGAATCACTAGGTAATGTTTCTTTGGTGAGTTAAATTATTGTTGGTCTTTTTGTATTTTTCCAATCTGATTATT CTTGTTCCTATTATGCTTCCTGCAGACATGAGGAAAGATGTTCAAGACATTTTCAAGTTGACTCCCCATGACAAGCAAGT TATGATGTTTTCTGCAACACTCAGCAAGGAAATCCGTCCAATCTGCAAGAAATTTATGCAAGATGTAATGTCTCATGGCC AGTACTACTTGAATTAGAATTCTCTTTTTCATACTGCCCGCATTCCTTGGGAATTTTTTAGATGTTTAGAATGATGTGGT TTTATCAGCTTTTACTTCTTATTGGAGTTCTGTTGGATGGTGTGTTCTATCCATTCTATTTTTACTGAAACACCTGGCTG GCAGGCGGAGCGTGGTTGGGTATAGATTGGACTAGGAACATTTGTGTGCCATGTTTCAGTAGTTCTCCTGATTGTCGCCA TATGTATTTTCTCTTCTCTCTTTAGGTTCATGTTGGAAGTTAGTTTTGTCTCTATAATCAGGTTGGTGTCAAGTATGGGT TTTTCTGTGTGTTGGGATTTTTTTTCCTTTAGAGAGGGGTAGGGTTGTTAGGTTATTCTGGGTTTGTTGCTGCCAGTTTT CTTAGTGAGTGTCAAGTGTTAGTGGCACTTGCTTGGCGTGGCCAAAAAAGTTTCTGCAAGGAGACAAAACAGATGCAAAG AAACTATGATTCAGGAGATCTGCATCCATCATTCATTACGTTCTGGATTCCATTAGCTTGTGGAAGGACCCTAATTTGAT TCACTGAAATTTGTTCCTTTCAGCCTATGGAAATTTATGTCGATGATGAGGCCAAGTTAACCCTTCATGGACTTGTGCAG GTATGGTTTTATCATTTCTTTTTATTTCTGCCCTTTTAAATGTGTCATTATAGCTTACCTAGATGCTGGATGTGGCAGCA CTACATCAAACTGAAAGAGGAGGAGAAAAACCGGAAGTTGAATGATCTTCTTGATGCACTAGACTTTAACCAAGTAGTTA TCTTTGTGAAAAGTGTGAGTAGAGCAGCTGAGCTGGACAAACTACTTGTGGAGTGCAACTTTCCATCTATATGCATTCAT TCTGGCATGTCCCAGGAAGAAAGGTATGTTCCATGATACCTCAATGGGTGCTTTTATATTTTTTTAGTTCATGCTTTGAT TGATGATTTGGTTGGCCAGTTTCATTTGGTGTGTTGTTGTTCTTTGTTTCAAACTTTCAATTTTGTTTACTTGTGTTGTG TTCTTTGTTTGTAAGCTTTCAATCTGATATTAATTTTTATTGGAGTAATTTCAATTATCTTTTGGGCTGTGGGGCACAGT ACGGGTGCAGCTTCCCTTTTAAGAGGGGAACACTGATTTTCAGTTTTAGTCTTTTTTTGTTGTGAATGGTGACATTTATT TTTTTGATACAATTTATGATGTTGGAATCCGCTATAGTATTATATGCTTGAAAGGCTGGAAAGAAAACTATAGATCAGAT CTGTGGATTGTATATGGAGCTGTGCAGAAAAAAGCACTGATCTTGCACTGACATATGACAATAATGGCTTAGAAAGCTGC CTTTGCTTGTTCCTTTTAATATATGCACTATTGATCTGGTATCAGTTATCTACACTTTTAACTGTCCAGAGATTGTATCT GCAATGGTATATTTAATAACAGCAGAATTAACAAATTTGTGAAAGTCTGAATGAACTTAAGTTCTAACTTCCAAGCTGCC TTTGTTAACAAGTTGGTGATTATGTAAGTTGGGAATTTCTGAATAGAATTGCTGGAGTGGGTGATGAATGGGTTTGTTCA ATCGTCTCTTTATGGAGTATCTTTGGTTTTGATGTTCTAAAGTGTTAGCAAATGCCACTTTTGATGTGAAACAAGACACA TGATGACTCTTTGGAAAAAAACTAATTGTATGTATGATTAATGAAGTTGAGAGAAGGGGTGCTTCTCTTAGTGTCTCCTT TCATTTAGTATTTACATAGTTCGCTGATAATAGTCTTCGATTTCTCCATTTTTCCATTGAAGTATGTTAATATTGGTTAC TGATTTCTATGTTAAAGATATCAGCCAATTTTATGTTGGCTACCGTAGGCGTAACACAACTTTTCTTCTTTACCCGGACC AGCTATGACAGCATAGGCGGGGTTTTTAATTTGCTGTTTTGTTATTGTTTTTTTTTCCTGGTCACACTGTAAAGAAGCTG TTCTCTGAATCAATTATGTTTGTGTATGATCTTGGTTTATGTATCTGCAGGTTAAAGCGTTATAAAGGTTTCAAGGAGGG GCATACAAGGATTCTGGTGGCAACAGATTTGGTTGGTAGGGGGATTGACATTGAGCGAGTCAATATCGTTATAAATTATG ACATGCCTGATTCTGCTGACACATATTTACACAGGGTATGGTTGAACAAAACCTGATAAGTTACATCTTTTAGCAATTTC TTGTAAATAATTTTAACTTGGGGTAGTCTAACTTTTTTTGGAGCGAGCGTACAGGTTGGCCGAGCTGGAAGATTTGGCAC CAAAGGCCTTGCAATCACATTTGTTTCATGTTCTGCTGACGTCGATGTTCTAAACAATGTAGGGAGCTATTTTTGTTGGA TTTCGTTGACATATTTGGCTGTTTCCATTAACATTTTTTATTTGGCTGTTGTGATTTTCAGGTCCAGTCAAGGTTTGAGG TGGATATAAAGCAGCTTCCTGAGCAGATTGATACCTCTACCTACAGTATGTGATTTTTCATTCAATTATTAGTTCCTTTG ATGGTTCAATGACATAAATGGATTTATAGTTCAGTTTTTTTATCTTCTATGTTTCGAGTTTGAAAAATTAGATAAAATTC AATTTTTAATAATAAAAATCATCAGCTAGTTTTATGAATAGAAGATTGCTACAGTACGTATTTTTATCAATAAGTTATGC TAGTGTTTTTTTAAATAATTTAACTTTTATATGTTTAAATTAGGCTTAATTGCACTTTTTGTCCTTGATCTATCATGATT GTGCAATTTAGGTCTCTGCTTTTTGGAACGAGCAATTTGGGTCCTATATGCTTGTGACGTTAGCAATTTTAGCCCTTCCG TTGGTGTTATGTAATTGGTGTTTTGTAATTTTATCCCTTCCGTTAGTGTTTGGTCCAAATTGTGAAGGAAATAGCTGATG TGGCATGTATGTTAATATTTTATTACCATTTAAATACTTTATTTTTATTTTACTTTTTATTAGACTAAATTCCACATGAC TGTTTTTCTTACTCTTTATCTCAGCCCTTCAAATCCCCCCAAAAAAAATACCATGGGTGCTGCCACCACCGTCCCCCACC ATTTATCTTCATCATCCTCCACTCATTTCAACACTCTCCATAACCATTTTTTTCCACCATGGCTTCCATAACCAAAACAC ACCGCCTCTTCCATTTCCCCATCCATTTGAAAGAGCCCCAAGGAGGGACCGAAAGAAACCCCACCTCATGAAGACTTTAT CTTCTTCTCTCAGTTCTCTGCATAATAGGGATTGTCAGGGATCTTTTCCTCTCCCTGCTTCAACATTCTTCGATGGCCTC CCCCTCACCTCCAAAAACCTCCTACTCTTATGTCACTCCTTCCATGAATAATAAAAACAGCCTCCACTATAACTGCTCCT AAAACTATATCCTATGTGGCGTAATATGATTGAGTGTTAGTGTAAAACTGTTTGCTCTGATATTTATCAAACTTGAATGA TATTTATGCTGCCTGCCCTTATTTGATTTGGTGTTCATCATTAATTCTAAATGATCTATGCTTTTTGGTGTCATGGGATT GTGTCGCCCTTTTTTGGGTCATAGGGTTTTTTATTTTTCATTTCTTTAATTTTAGCTACCAATATCAAGTTTCTTCTGAC TTGGTGTCCTTGACATCTTCTGCAGTGCCATCGTAGATGATTTTGTTCCGGGACGAGGCTGTAACTGCCTGGATGTATGA GTAGGGTCTTCTGGATTTTGTTACTGTTGAAGGTTGATCTTTATGAGAGTTTGCACTTTGCAGTATGATGGCTTATGTAC TTTTGGGGTTTTATTTACTGGATTTACTCCGGCTTATGGATACTATGGTTGAGTTAATTTTCTGGCAACATTGATGTTTG TGGTTGAATTAGATGATTTAATAGGTTGGATCATCAGGACTGTCATATCAACAATGTGCAATTTAAGGTTTAGTGGAAGT AATTAGACATGATTTCATAACATGGTTGAACACCACAATCGATATAAAACTCACTATGAAG
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0384400.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGCAGAAATTAAGGACGAAGGATACGAGGAAGAGCTTCTCGACTACGAGGAGGAAGAAGACAAGGCCCTCGACTCTGC CGGAACAAAAGTCAACGGTGAAGCTACTAAGAAGGGCTATGTTGGAATCCACAGTTCAGGATTCAGAGACTTTCTTCTCA AACCAGAGCTTCTTAGGGCTATTGTGGACTCGGGATTTGAGCATCCTTCTGAAGTGCAACATGAGTGCATCCCTCAAGCA ATCCTTGGAATGGATGTAATCTGCCAAGCTAAATCTGGAATGGGGAAGACTGCTGTCTTCGTTCTCTCGAGTTTGCAACA GATTGATCCCGTTCCAGGCCAAGTTTCTGCACTGGTTCTTTGTCATACAAGAGAGTTAGCTTACCAGATATGCCACGAGT TTGAGAGGTTTAGCACCTACTTACCTGACCTCAAGGTTGCTGTCTTTTATGGTGGGGTCAACATCAAAGTTCACAAGGAT CTGTTGAGAAATGAGTGCCCTCATATTGTTGTTGGAACGCCTGGAAGAATACTTGCATTGACTAGGGATAAGGACCTTTC TTTGAAGAATGTTAGGCATTTCATTTTAGATGAATGCGATAAGATGCTGGAATCACTAGACATGAGGAAAGATGTTCAAG ACATTTTCAAGTTGACTCCCCATGACAAGCAAGTTATGATGTTTTCTGCAACACTCAGCAAGGAAATCCGTCCAATCTGC AAGAAATTTATGCAAGATCCTATGGAAATTTATGTCGATGATGAGGCCAAGTTAACCCTTCATGGACTTGTGCAGCACTA CATCAAACTGAAAGAGGAGGAGAAAAACCGGAAGTTGAATGATCTTCTTGATGCACTAGACTTTAACCAAGTAGTTATCT TTGTGAAAAGTGTGAGTAGAGCAGCTGAGCTGGACAAACTACTTGTGGAGTGCAACTTTCCATCTATATGCATTCATTCT GGCATGTCCCAGGAAGAAAGGTTAAAGCGTTATAAAGGTTTCAAGGAGGGGCATACAAGGATTCTGGTGGCAACAGATTT GGTTGGTAGGGGGATTGACATTGAGCGAGTCAATATCGTTATAAATTATGACATGCCTGATTCTGCTGACACATATTTAC ACAGGGTTGGCCGAGCTGGAAGATTTGGCACCAAAGGCCTTGCAATCACATTTGTTTCATGTTCTGCTGACGTCGATGTT CTAAACAATGTCCAGTCAAGGTTTGAGGTGGATATAAAGCAGCTTCCTGAGCAGATTGATACCTCTACCTACATGCCATC GTAG
Download CDS Sequence

Protein sequence (LotjaGi1g1v0384400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MAEIKDEGYEEELLDYEEEEDKALDSAGTKVNGEATKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQA ILGMDVICQAKSGMGKTAVFVLSSLQQIDPVPGQVSALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHKD LLRNECPHIVVGTPGRILALTRDKDLSLKNVRHFILDECDKMLESLDMRKDVQDIFKLTPHDKQVMMFSATLSKEIRPIC KKFMQDPMEIYVDDEAKLTLHGLVQHYIKLKEEEKNRKLNDLLDALDFNQVVIFVKSVSRAAELDKLLVECNFPSICIHS GMSQEERLKRYKGFKEGHTRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSCSADVDV LNNVQSRFEVDIKQLPEQIDTSTYMPS
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR24031
9 412 404 3.4E-237 –
PANTHER
PTHR24031:SF679
9 412 404 3.4E-237 –
Gene3D
G3DSA:3.40.50.300
36 252 217 2.1E-65 –
CDD
cd17950
45 252 208 1.14417E-160 –
ProSiteProfiles
PS51195
46 74 29 9.665
IPR014014
SMART
SM00487
65 266 202 3.0E-54
IPR014001
Pfam
PF00270
71 236 166 2.8E-37
IPR011545
ProSiteProfiles
PS51192
77 250 174 25.461
IPR014001
SUPERFAMILY
SSF52540
115 394 280 1.74E-68
IPR027417
ProSiteProfiles
PS51194
262 423 162 22.096
IPR001650
CDD
cd18787
263 392 130 1.07074E-57 –
Gene3D
G3DSA:3.40.50.300
264 427 164 6.9E-53 –
Pfam
PF00271
276 383 108 6.6E-28
IPR001650
SMART
SM00490
302 383 82 4.4E-31
IPR001650

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0384400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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