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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0384400 |
| Transcript ID | LotjaGi1g1v0384400.4 |
| Related isoforms 8 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP-dependent RNA helicase; TAIR: AT5G11170.1 DEAD/DEAH box RNA helicase family protein; Swiss-Prot: sp|Q56XG6|RH15_ARATH DEAD-box ATP-dependent RNA helicase 15; TrEMBL-Plants: tr|A0A1J7GBI8|A0A1J7GBI8_LUPAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0384400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:86774282..86778920) extracted from Lotus japonicus Gifu genome v1.2.
ATGGCAGAAATTAAGGACGAAGGATACGAGGAAGAGCTTCTCGACTACGAGGAGGAAGAAGACAAGGCCCTCGACTCTGC CGGAACAAAAGTCAACGGTGAAGCTACTAAGAAGTAAGCTATTTCTTGTTTTTTCCTGTGTCTTGATTTGTTTCGTGAAA TTATATTAGTTTAATGGTGCGTTTCTGTTAACAGCTTAATTAAGCTCGCATAAGCACTTATTCATAAGCTAATTTGAGAA TCTGATTGAAATAATCTGAACATAGGTGGTAGGGAAGCAAAGCATATACAAACAGTTTATGAAAATAAGCTCAAAGCAGT TTATAGATAAGCCATAATATGTATAAGTGCTTATGCTAACTCGTTATGTCGAAACAATTGGACTTTAGTGCACAATATGT TGGTTTAGGACTTAAACATTTGATTATTTTTTATATAATTAATCTCTCTTTCATTTGTTTTATGTAGGGGCTATGTTGGA ATCCACAGTTCAGGATTCAGAGACTTTCTTCTCAAACCAGAGCTTCTTAGGGCTATTGTGGACTCGGGATTTGAGCATCC TTCTGAAGGCAAACTATCCAGCTATCTTAATTTACATTTTTTGTTGTTGTATAGGTTGCAAATAATATGATGTTTTTGTG ATTCTAAAGATTTTATGGTTATTTAAATTATTAGTATTTCAGAATAAGCAAATGCTAATGCCCTTTGTGCACTAATTGAG AAGACTTGAAAGTATTTTTCCAGAAATATTGATCACACAGAAAATAGTTAACTAATGCATCTTGCATGTCTGACCATATT ATCATTAACTATGAAGCATGGACATGGGGACTGGACATTTTCACGACAGATCTTCAATGTTTGAAATATATAGGTCCCTG AGGCATTGCTGCATAAATTCATGTGTATATGTGTGCGTATGTGTGCATTTGTATTTGTTGATATATGTATGTTTGCATGT GTTTGTATAGGGACTTCATTAGTTGCCATTGCCAGCATTTGAGGAGTTAAACTCGAGTCTTGGCCCATTCATGCTCATGC ATGGTTGTATTGTCAAGTTCAGCTCCTCTCACTAAATTTGTGCTGGTGTCCTTGTTGGTATTAGATATGTGTTGGACACT CCAACATCTCAAAAAGTGTCCGTGACATACACATATAGAAGCCATGTAGTTTTGTATGATGCTATGCTATTTAAGTATTT CTAAAATTTGATTAACTGAACTTATAACTTTGTTTGACGTTTACTTTACAGGTAATACTTCTTCGACAATCTTGTTTTGG AGAACTTACATGCTTTGGTAATGGTATCAAATCAGATTAAATGCGTCAGAAAGGTTTTGTTTTACTTATCACCACTTCCT TCGGCCCTGTTTTCTTTGCTTTATCATCAGTGCAACATGAGTGCATCCCTCAAGCAATCCTTGGAATGGATGTAATCTGC CAAGCTAAATCTGGAATGGGGAAGACTGCTGTCTTCGTTCTCTCGAGTTTGCAACAGATTGATCCCGTTCCAGGCCAAGT TTCTGCACTGGTTCTTTGTCATACAAGAGAGTTAGCTTACCAGGTAGTTATTTGGGGTTCAGTGCAAGAAAGTTAGGGAA TTTAGTATTATAGTTGCTCTTGATTTAAGATGTGCAATCTCTTCTGTGCAGATATGCCACGAGTTTGAGAGGTTTAGCAC CTACTTACCTGACCTCAAGGTTGCTGTCTTTTATGGTGGGGTCAACATCAAAGTTCACAAGGATCTGTTGAGAAATGAGT GCCCTCATATTGTTGTTGGAACGCCTGGAAGAATACTTGCATTGACTAGGGATAAGGACCTTTCTTTGAAGAATGTTAGG CATTTCATTTTAGATGAATGCGATAAGATGCTGGAATCACTAGGTAATGTTTCTTTGGTGAGTTAAATTATTGTTGGTCT TTTTGTATTTTTCCAATCTGATTATTCTTGTTCCTATTATGCTTCCTGCAGACATGAGGAAAGATGTTCAAGACATTTTC AAGTTGACTCCCCATGACAAGCAAGTTATGATGTTTTCTGCAACACTCAGCAAGGAAATCCGTCCAATCTGCAAGAAATT TATGCAAGATGTAATGTCTCATGGCCAGTACTACTTGAATTAGAATTCTCTTTTTCATACTGCCCGCATTCCTTGGGAAT TTTTTAGATGTTTAGAATGATGTGGTTTTATCAGCTTTTACTTCTTATTGGAGTTCTGTTGGATGGTGTGTTCTATCCAT TCTATTTTTACTGAAACACCTGGCTGGCAGGCGGAGCGTGGTTGGGTATAGATTGGACTAGGAACATTTGTGTGCCATGT TTCAGTAGTTCTCCTGATTGTCGCCATATGTATTTTCTCTTCTCTCTTTAGGTTCATGTTGGAAGTTAGTTTTGTCTCTA TAATCAGGTTGGTGTCAAGTATGGGTTTTTCTGTGTGTTGGGATTTTTTTTCCTTTAGAGAGGGGTAGGGTTGTTAGGTT ATTCTGGGTTTGTTGCTGCCAGTTTTCTTAGTGAGTGTCAAGTGTTAGTGGCACTTGCTTGGCGTGGCCAAAAAAGTTTC TGCAAGGAGACAAAACAGATGCAAAGAAACTATGATTCAGGAGATCTGCATCCATCATTCATTACGTTCTGGATTCCATT AGCTTGTGGAAGGACCCTAATTTGATTCACTGAAATTTGTTCCTTTCAGCCTATGGAAATTTATGTCGATGATGAGGCCA AGTTAACCCTTCATGGACTTGTGCAGGTATGGTTTTATCATTTCTTTTTATTTCTGCCCTTTTAAATGTGTCATTATAGC TTACCTAGATGCTGGATGTGGCAGCACTACATCAAACTGAAAGAGGAGGAGAAAAACCGGAAGTTGAATGATCTTCTTGA TGCACTAGACTTTAACCAAGTAGTTATCTTTGTGAAAAGTGTGAGTAGAGCAGCTGAGCTGGACAAACTACTTGTGGAGT GCAACTTTCCATCTATATGCATTCATTCTGGCATGTCCCAGGAAGAAAGGTATGTTCCATGATACCTCAATGGGTGCTTT TATATTTTTTTAGTTCATGCTTTGATTGATGATTTGGTTGGCCAGTTTCATTTGGTGTGTTGTTGTTCTTTGTTTCAAAC TTTCAATTTTGTTTACTTGTGTTGTGTTCTTTGTTTGTAAGCTTTCAATCTGATATTAATTTTTATTGGAGTAATTTCAA TTATCTTTTGGGCTGTGGGGCACAGTACGGGTGCAGCTTCCCTTTTAAGAGGGGAACACTGATTTTCAGTTTTAGTCTTT TTTTGTTGTGAATGGTGACATTTATTTTTTTGATACAATTTATGATGTTGGAATCCGCTATAGTATTATATGCTTGAAAG GCTGGAAAGAAAACTATAGATCAGATCTGTGGATTGTATATGGAGCTGTGCAGAAAAAAGCACTGATCTTGCACTGACAT ATGACAATAATGGCTTAGAAAGCTGCCTTTGCTTGTTCCTTTTAATATATGCACTATTGATCTGGTATCAGTTATCTACA CTTTTAACTGTCCAGAGATTGTATCTGCAATGGTATATTTAATAACAGCAGAATTAACAAATTTGTGAAAGTCTGAATGA ACTTAAGTTCTAACTTCCAAGCTGCCTTTGTTAACAAGTTGGTGATTATGTAAGTTGGGAATTTCTGAATAGAATTGCTG GAGTGGGTGATGAATGGGTTTGTTCAATCGTCTCTTTATGGAGTATCTTTGGTTTTGATGTTCTAAAGTGTTAGCAAATG CCACTTTTGATGTGAAACAAGACACATGATGACTCTTTGGAAAAAAACTAATTGTATGTATGATTAATGAAGTTGAGAGA AGGGGTGCTTCTCTTAGTGTCTCCTTTCATTTAGTATTTACATAGTTCGCTGATAATAGTCTTCGATTTCTCCATTTTTC CATTGAAGTATGTTAATATTGGTTACTGATTTCTATGTTAAAGATATCAGCCAATTTTATGTTGGCTACCGTAGGCGTAA CACAACTTTTCTTCTTTACCCGGACCAGCTATGACAGCATAGGCGGGGTTTTTAATTTGCTGTTTTGTTATTGTTTTTTT TTCCTGGTCACACTGTAAAGAAGCTGTTCTCTGAATCAATTATGTTTGTGTATGATCTTGGTTTATGTATCTGCAGGTTA AAGCGTTATAAAGGTTTCAAGGAGGGGCATACAAGGATTCTGGTGGCAACAGATTTGGTTGGTAGGGGGATTGACATTGA GCGAGTCAATATCGTTATAAATTATGACATGCCTGATTCTGCTGACACATATTTACACAGGGTATGGTTGAACAAAACCT GATAAGTTACATCTTTTAGCAATTTCTTGTAAATAATTTTAACTTGGGGTAGTCTAACTTTTTTTGGAGCGAGCGTACAG GTTGGCCGAGCTGGAAGATTTGGCACCAAAGGCCTTGCAATCACATTTGTTTCATGTTCTGCTGACGTCGATGTTCTAAA CAATGTAGGGAGCTATTTTTGTTGGATTTCGTTGACATATTTGGCTGTTTCCATTAACATTTTTTATTTGGCTGTTGTGA TTTTCAGGTCCAGTCAAGGTTTGAGGTGGATATAAAGCAGCTTCCTGAGCAGATTGATACCTCTACCTACAGTATGTGA
CDS sequence (LotjaGi1g1v0384400.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCAGAAATTAAGGACGAAGGATACGAGGAAGAGCTTCTCGACTACGAGGAGGAAGAAGACAAGGCCCTCGACTCTGC CGGAACAAAAGTCAACGGTGAAGCTACTAAGAAGGGCTATGTTGGAATCCACAGTTCAGGATTCAGAGACTTTCTTCTCA AACCAGAGCTTCTTAGGGCTATTGTGGACTCGGGATTTGAGCATCCTTCTGAAGTGCAACATGAGTGCATCCCTCAAGCA ATCCTTGGAATGGATGTAATCTGCCAAGCTAAATCTGGAATGGGGAAGACTGCTGTCTTCGTTCTCTCGAGTTTGCAACA GATTGATCCCGTTCCAGGCCAAGTTTCTGCACTGGTTCTTTGTCATACAAGAGAGTTAGCTTACCAGATATGCCACGAGT TTGAGAGGTTTAGCACCTACTTACCTGACCTCAAGGTTGCTGTCTTTTATGGTGGGGTCAACATCAAAGTTCACAAGGAT CTGTTGAGAAATGAGTGCCCTCATATTGTTGTTGGAACGCCTGGAAGAATACTTGCATTGACTAGGGATAAGGACCTTTC TTTGAAGAATGTTAGGCATTTCATTTTAGATGAATGCGATAAGATGCTGGAATCACTAGACATGAGGAAAGATGTTCAAG ACATTTTCAAGTTGACTCCCCATGACAAGCAAGTTATGATGTTTTCTGCAACACTCAGCAAGGAAATCCGTCCAATCTGC AAGAAATTTATGCAAGATCCTATGGAAATTTATGTCGATGATGAGGCCAAGTTAACCCTTCATGGACTTGTGCAGCACTA CATCAAACTGAAAGAGGAGGAGAAAAACCGGAAGTTGAATGATCTTCTTGATGCACTAGACTTTAACCAAGTAGTTATCT TTGTGAAAAGTGTGAGTAGAGCAGCTGAGCTGGACAAACTACTTGTGGAGTGCAACTTTCCATCTATATGCATTCATTCT GGCATGTCCCAGGAAGAAAGGTTAAAGCGTTATAAAGGTTTCAAGGAGGGGCATACAAGGATTCTGGTGGCAACAGATTT GGTTGGTAGGGGGATTGACATTGAGCGAGTCAATATCGTTATAAATTATGACATGCCTGATTCTGCTGACACATATTTAC ACAGGGTTGGCCGAGCTGGAAGATTTGGCACCAAAGGCCTTGCAATCACATTTGTTTCATGTTCTGCTGACGTCGATGTT CTAAACAATGTCCAGTCAAGGTTTGAGGTGGATATAAAGCAGCTTCCTGAGCAGATTGATACCTCTACCTACAGTATGTG A
Protein sequence (LotjaGi1g1v0384400.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAEIKDEGYEEELLDYEEEEDKALDSAGTKVNGEATKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQA ILGMDVICQAKSGMGKTAVFVLSSLQQIDPVPGQVSALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHKD LLRNECPHIVVGTPGRILALTRDKDLSLKNVRHFILDECDKMLESLDMRKDVQDIFKLTPHDKQVMMFSATLSKEIRPIC KKFMQDPMEIYVDDEAKLTLHGLVQHYIKLKEEEKNRKLNDLLDALDFNQVVIFVKSVSRAAELDKLLVECNFPSICIHS GMSQEERLKRYKGFKEGHTRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSCSADVDV LNNVQSRFEVDIKQLPEQIDTSTYSM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 9 | 411 | 403 | 3.2E-237 | – | |
| PANTHER | 9 | 411 | 403 | 3.2E-237 | – | |
| Gene3D | 36 | 252 | 217 | 2.1E-65 | – | |
| CDD | 45 | 252 | 208 | 1.11516E-160 | – | |
| ProSiteProfiles | 46 | 74 | 29 | 9.665 | ||
| SMART | 65 | 266 | 202 | 3.0E-54 | ||
| Pfam | 71 | 236 | 166 | 2.8E-37 | ||
| ProSiteProfiles | 77 | 250 | 174 | 25.461 | ||
| SUPERFAMILY | 115 | 394 | 280 | 1.68E-68 | ||
| ProSiteProfiles | 262 | 423 | 162 | 22.096 | ||
| CDD | 263 | 392 | 130 | 1.39489E-57 | – | |
| Gene3D | 264 | 426 | 163 | 1.0E-52 | – | |
| Pfam | 276 | 383 | 108 | 6.5E-28 | ||
| SMART | 302 | 383 | 82 | 4.4E-31 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
Expression pattern of LotjaGi1g1v0384400.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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