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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0384400 |
| Transcript ID | LotjaGi1g1v0384400.6 |
| Related isoforms 8 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | ATP-dependent RNA helicase; TAIR: AT5G11170.1 DEAD/DEAH box RNA helicase family protein; Swiss-Prot: sp|Q56XG6|RH15_ARATH DEAD-box ATP-dependent RNA helicase 15; TrEMBL-Plants: tr|A0A0L9UGX2|A0A0L9UGX2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0384400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:86774452..86778920) extracted from Lotus japonicus Gifu genome v1.2.
TTAATGGTGCGTTTCTGTTAACAGCTTAATTAAGCTCGCATAAGCACTTATTCATAAGCTAATTTGAGAATCTGATTGAA ATAATCTGAACATAGGTGGTAGGGAAGCAAAGCATATACAAACAGTTTATGAAAATAAGCTCAAAGCAGTTTATAGATAA GCCATAATATGTATAAGTGCTTATGCTAACTCGTTATGTCGAAACAATTGGACTTTAGTGCACAATATGTTGGTTTAGGA CTTAAACATTTGATTATTTTTTATATAATTAATCTCTCTTTCATTTGTTTTATGTAGGGGCTATGTTGGAATCCACAGTT CAGGATTCAGAGACTTTCTTCTCAAACCAGAGCTTCTTAGGGCTATTGTGGACTCGGGATTTGAGCATCCTTCTGAAGGC AAACTATCCAGCTATCTTAATTTACATTTTTTGTTGTTGTATAGGTTGCAAATAATATGATGTTTTTGTGATTCTAAAGA TTTTATGGTTATTTAAATTATTAGTATTTCAGAATAAGCAAATGCTAATGCCCTTTGTGCACTAATTGAGAAGACTTGAA AGTATTTTTCCAGAAATATTGATCACACAGAAAATAGTTAACTAATGCATCTTGCATGTCTGACCATATTATCATTAACT ATGAAGCATGGACATGGGGACTGGACATTTTCACGACAGATCTTCAATGTTTGAAATATATAGGTCCCTGAGGCATTGCT GCATAAATTCATGTGTATATGTGTGCGTATGTGTGCATTTGTATTTGTTGATATATGTATGTTTGCATGTGTTTGTATAG GGACTTCATTAGTTGCCATTGCCAGCATTTGAGGAGTTAAACTCGAGTCTTGGCCCATTCATGCTCATGCATGGTTGTAT TGTCAAGTTCAGCTCCTCTCACTAAATTTGTGCTGGTGTCCTTGTTGGTATTAGATATGTGTTGGACACTCCAACATCTC AAAAAGTGTCCGTGACATACACATATAGAAGCCATGTAGTTTTGTATGATGCTATGCTATTTAAGTATTTCTAAAATTTG ATTAACTGAACTTATAACTTTGTTTGACGTTTACTTTACAGGTAATACTTCTTCGACAATCTTGTTTTGGAGAACTTACA TGCTTTGGTAATGGTATCAAATCAGATTAAATGCGTCAGAAAGGTTTTGTTTTACTTATCACCACTTCCTTCGGCCCTGT TTTCTTTGCTTTATCATCAGTGCAACATGAGTGCATCCCTCAAGCAATCCTTGGAATGGATGTAATCTGCCAAGCTAAAT CTGGAATGGGGAAGACTGCTGTCTTCGTTCTCTCGAGTTTGCAACAGATTGATCCCGTTCCAGGCCAAGTTTCTGCACTG GTTCTTTGTCATACAAGAGAGTTAGCTTACCAGGTAGTTATTTGGGGTTCAGTGCAAGAAAGTTAGGGAATTTAGTATTA TAGTTGCTCTTGATTTAAGATGTGCAATCTCTTCTGTGCAGATATGCCACGAGTTTGAGAGGTTTAGCACCTACTTACCT GACCTCAAGGTTGCTGTCTTTTATGGTGGGGTCAACATCAAAGTTCACAAGGATCTGTTGAGAAATGAGTGCCCTCATAT TGTTGTTGGAACGCCTGGAAGAATACTTGCATTGACTAGGGATAAGGACCTTTCTTTGAAGAATGTTAGGCATTTCATTT TAGATGAATGCGATAAGATGCTGGAATCACTAGGTAATGTTTCTTTGGTGAGTTAAATTATTGTTGGTCTTTTTGTATTT TTCCAATCTGATTATTCTTGTTCCTATTATGCTTCCTGCAGACATGAGGAAAGATGTTCAAGACATTTTCAAGTTGACTC CCCATGACAAGCAAGTTATGATGTTTTCTGCAACACTCAGCAAGGAAATCCGTCCAATCTGCAAGAAATTTATGCAAGAT GTAATGTCTCATGGCCAGTACTACTTGAATTAGAATTCTCTTTTTCATACTGCCCGCATTCCTTGGGAATTTTTTAGATG TTTAGAATGATGTGGTTTTATCAGCTTTTACTTCTTATTGGAGTTCTGTTGGATGGTGTGTTCTATCCATTCTATTTTTA CTGAAACACCTGGCTGGCAGGCGGAGCGTGGTTGGGTATAGATTGGACTAGGAACATTTGTGTGCCATGTTTCAGTAGTT CTCCTGATTGTCGCCATATGTATTTTCTCTTCTCTCTTTAGGTTCATGTTGGAAGTTAGTTTTGTCTCTATAATCAGGTT GGTGTCAAGTATGGGTTTTTCTGTGTGTTGGGATTTTTTTTCCTTTAGAGAGGGGTAGGGTTGTTAGGTTATTCTGGGTT TGTTGCTGCCAGTTTTCTTAGTGAGTGTCAAGTGTTAGTGGCACTTGCTTGGCGTGGCCAAAAAAGTTTCTGCAAGGAGA CAAAACAGATGCAAAGAAACTATGATTCAGGAGATCTGCATCCATCATTCATTACGTTCTGGATTCCATTAGCTTGTGGA AGGACCCTAATTTGATTCACTGAAATTTGTTCCTTTCAGCCTATGGAAATTTATGTCGATGATGAGGCCAAGTTAACCCT TCATGGACTTGTGCAGGTATGGTTTTATCATTTCTTTTTATTTCTGCCCTTTTAAATGTGTCATTATAGCTTACCTAGAT GCTGGATGTGGCAGCACTACATCAAACTGAAAGAGGAGGAGAAAAACCGGAAGTTGAATGATCTTCTTGATGCACTAGAC TTTAACCAAGTAGTTATCTTTGTGAAAAGTGTGAGTAGAGCAGCTGAGCTGGACAAACTACTTGTGGAGTGCAACTTTCC ATCTATATGCATTCATTCTGGCATGTCCCAGGAAGAAAGGTATGTTCCATGATACCTCAATGGGTGCTTTTATATTTTTT TAGTTCATGCTTTGATTGATGATTTGGTTGGCCAGTTTCATTTGGTGTGTTGTTGTTCTTTGTTTCAAACTTTCAATTTT GTTTACTTGTGTTGTGTTCTTTGTTTGTAAGCTTTCAATCTGATATTAATTTTTATTGGAGTAATTTCAATTATCTTTTG GGCTGTGGGGCACAGTACGGGTGCAGCTTCCCTTTTAAGAGGGGAACACTGATTTTCAGTTTTAGTCTTTTTTTGTTGTG AATGGTGACATTTATTTTTTTGATACAATTTATGATGTTGGAATCCGCTATAGTATTATATGCTTGAAAGGCTGGAAAGA AAACTATAGATCAGATCTGTGGATTGTATATGGAGCTGTGCAGAAAAAAGCACTGATCTTGCACTGACATATGACAATAA TGGCTTAGAAAGCTGCCTTTGCTTGTTCCTTTTAATATATGCACTATTGATCTGGTATCAGTTATCTACACTTTTAACTG TCCAGAGATTGTATCTGCAATGGTATATTTAATAACAGCAGAATTAACAAATTTGTGAAAGTCTGAATGAACTTAAGTTC TAACTTCCAAGCTGCCTTTGTTAACAAGTTGGTGATTATGTAAGTTGGGAATTTCTGAATAGAATTGCTGGAGTGGGTGA TGAATGGGTTTGTTCAATCGTCTCTTTATGGAGTATCTTTGGTTTTGATGTTCTAAAGTGTTAGCAAATGCCACTTTTGA TGTGAAACAAGACACATGATGACTCTTTGGAAAAAAACTAATTGTATGTATGATTAATGAAGTTGAGAGAAGGGGTGCTT CTCTTAGTGTCTCCTTTCATTTAGTATTTACATAGTTCGCTGATAATAGTCTTCGATTTCTCCATTTTTCCATTGAAGTA TGTTAATATTGGTTACTGATTTCTATGTTAAAGATATCAGCCAATTTTATGTTGGCTACCGTAGGCGTAACACAACTTTT CTTCTTTACCCGGACCAGCTATGACAGCATAGGCGGGGTTTTTAATTTGCTGTTTTGTTATTGTTTTTTTTTCCTGGTCA CACTGTAAAGAAGCTGTTCTCTGAATCAATTATGTTTGTGTATGATCTTGGTTTATGTATCTGCAGGTTAAAGCGTTATA AAGGTTTCAAGGAGGGGCATACAAGGATTCTGGTGGCAACAGATTTGGTTGGTAGGGGGATTGACATTGAGCGAGTCAAT ATCGTTATAAATTATGACATGCCTGATTCTGCTGACACATATTTACACAGGGTATGGTTGAACAAAACCTGATAAGTTAC ATCTTTTAGCAATTTCTTGTAAATAATTTTAACTTGGGGTAGTCTAACTTTTTTTGGAGCGAGCGTACAGGTTGGCCGAG CTGGAAGATTTGGCACCAAAGGCCTTGCAATCACATTTGTTTCATGTTCTGCTGACGTCGATGTTCTAAACAATGTAGGG AGCTATTTTTGTTGGATTTCGTTGACATATTTGGCTGTTTCCATTAACATTTTTTATTTGGCTGTTGTGATTTTCAGGTC CAGTCAAGGTTTGAGGTGGATATAAAGCAGCTTCCTGAGCAGATTGATACCTCTACCTACAGTATGTGA
CDS sequence (LotjaGi1g1v0384400.6) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGGGCTATGTTGGAATCCACAGTTCAGGATTCAGAGACTTTCTTCTCAAACCAGAGCTTCTTAGGGCTATTGTGGA CTCGGGATTTGAGCATCCTTCTGAAGGGACTTCATTAGTTGCCATTGTAATACTTCTTCGACAATCTTGTTTTGGAGAAC TTACATGCTTTGTGCAACATGAGTGCATCCCTCAAGCAATCCTTGGAATGGATGTAATCTGCCAAGCTAAATCTGGAATG GGGAAGACTGCTGTCTTCGTTCTCTCGAGTTTGCAACAGATTGATCCCGTTCCAGGCCAAGTTTCTGCACTGGTTCTTTG TCATACAAGAGAGTTAGCTTACCAGATATGCCACGAGTTTGAGAGGTTTAGCACCTACTTACCTGACCTCAAGGTTGCTG TCTTTTATGGTGGGGTCAACATCAAAGTTCACAAGGATCTGTTGAGAAATGAGTGCCCTCATATTGTTGTTGGAACGCCT GGAAGAATACTTGCATTGACTAGGGATAAGGACCTTTCTTTGAAGAATGTTAGGCATTTCATTTTAGATGAATGCGATAA GATGCTGGAATCACTAGACATGAGGAAAGATGTTCAAGACATTTTCAAGTTGACTCCCCATGACAAGCAAGTTATGATGT TTTCTGCAACACTCAGCAAGGAAATCCGTCCAATCTGCAAGAAATTTATGCAAGATCCTATGGAAATTTATGTCGATGAT GAGGCCAAGTTAACCCTTCATGGACTTGTGCAGCACTACATCAAACTGAAAGAGGAGGAGAAAAACCGGAAGTTGAATGA TCTTCTTGATGCACTAGACTTTAACCAAGTAGTTATCTTTGTGAAAAGTGTGAGTAGAGCAGCTGAGCTGGACAAACTAC TTGTGGAGTGCAACTTTCCATCTATATGCATTCATTCTGGCATGTCCCAGGAAGAAAGGTTAAAGCGTTATAAAGGTTTC AAGGAGGGGCATACAAGGATTCTGGTGGCAACAGATTTGGTTGGTAGGGGGATTGACATTGAGCGAGTCAATATCGTTAT AAATTATGACATGCCTGATTCTGCTGACACATATTTACACAGGGTTGGCCGAGCTGGAAGATTTGGCACCAAAGGCCTTG CAATCACATTTGTTTCATGTTCTGCTGACGTCGATGTTCTAAACAATGTCCAGTCAAGGTTTGAGGTGGATATAAAGCAG CTTCCTGAGCAGATTGATACCTCTACCTACAGTATGTGA
Protein sequence (LotjaGi1g1v0384400.6) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEGTSLVAIVILLRQSCFGELTCFVQHECIPQAILGMDVICQAKSGM GKTAVFVLSSLQQIDPVPGQVSALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHKDLLRNECPHIVVGTP GRILALTRDKDLSLKNVRHFILDECDKMLESLDMRKDVQDIFKLTPHDKQVMMFSATLSKEIRPICKKFMQDPMEIYVDD EAKLTLHGLVQHYIKLKEEEKNRKLNDLLDALDFNQVVIFVKSVSRAAELDKLLVECNFPSICIHSGMSQEERLKRYKGF KEGHTRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSCSADVDVLNNVQSRFEVDIKQ LPEQIDTSTYSM
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 4 | 238 | 235 | 2.9E-58 | – | |
| CDD | 9 | 238 | 230 | 2.94794E-155 | – | |
| ProSiteProfiles | 10 | 38 | 29 | 7.826 | ||
| PANTHER | 12 | 397 | 386 | 3.5E-219 | – | |
| PANTHER | 12 | 397 | 386 | 3.5E-219 | – | |
| SMART | 51 | 252 | 202 | 7.1E-50 | ||
| Pfam | 58 | 222 | 165 | 5.6E-37 | ||
| ProSiteProfiles | 63 | 236 | 174 | 25.461 | ||
| SUPERFAMILY | 101 | 380 | 280 | 1.39E-68 | ||
| ProSiteProfiles | 248 | 409 | 162 | 22.096 | ||
| CDD | 249 | 378 | 130 | 1.88477E-57 | – | |
| Gene3D | 250 | 412 | 163 | 9.7E-53 | – | |
| Pfam | 262 | 369 | 108 | 6.2E-28 | ||
| SMART | 288 | 369 | 82 | 4.4E-31 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
Expression pattern of LotjaGi1g1v0384400.6, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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