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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0389500 |
| Transcript ID | LotjaGi1g1v0389500.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RING/U-box superfamily protein; TAIR: AT4G32600.1 C3H4 type zinc finger protein; Swiss-Prot: sp|Q93Z92|RING4_ARATH E3 ubiquitin-protein ligase At4g11680; TrEMBL-Plants: tr|I1JUI4|I1JUI4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0389500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:87294570..87298908) extracted from Lotus japonicus Gifu genome v1.2.
GTGTTGAGGGGCTTATGAATGGTGGGTGACTGAGTCTAACAAACACCATTCATTCATTAGTTCCTCTCTTTGCCTTCTCC GTCACAGAAACCGGGCCCCACTTTCCTTCAGACACCGTTTTCCTCTATTCCCTGTCGTTTCATTCTAGATTCTTTGAGTG CCACCGTCGTTTTTATATGTTCATTATTCAGTCAACGTGTTCCTTCCATCAATTCAATTCAACTCAACTCTCTCTCGTTC AACAAGAACAAGCAAACCCTAATTAACTATAATCCTCTTCCATTCCCTAATTAATCACCTCATACTCAGGTAATCACCCT CTTAATCCTCCTCAATTCTCATTCATCCATTCCAAAATCTATCAATTACACCAATCAATTTTGCAATTTCTGGTTTTCGA ATTTCTTAACCCTAATTTAGTTTCAAAGGGTAACAACAAGATTGCAGTGAAATTTTGCTTCTTTTGCAGAACCCAGGTGG TTGCTGCTTCTGGGGTTTTCAATTTCAAATTCAATCTTCACTTGATAGAGAAAATGGAATTGTAAACGTTGATGGATGTT TTGTTTTCACCTCAACTGTGTCCTGAAGGTTCTTCTTCTTCTTCTTCCGACACTGACCCTTTGTTAATGGCGCGACCAAC TCACCATGTGATTGACATAACCCCCAATTCTCAAGCTTCTACTTCTGCTGCTGATTCCTCTGTTGCCCATGATTTTGGTG GTTCTAGATTGGTTGTTTCTTCTTCTGGGCCTTCAAATGGGTCCAATTCTAGGATGAGAGTGAGGCATGGAGAACAAAGG ACGATTAGGAGTCCGTTGAATTCAGGGCTTTGGGTATCGCTTGAGGCTGCCTTGACACTCAGCCAGATTGTTGCTTCTGT TGTTGTTTTGTCGTTGTCGAGGCATGAGCATACGCGTGCTCCGTTGTTTGCTTGGATTGTGGGTTATGCTTCAGGGTGTG TTGCTACCCTTCCTCTACTTTTGTGGCGCTATTGTTATAATAACTGTGTAAGGGAGCTGGATTCATCTCAAGCTTCTCCT AGGATTCATGATACTTCAGGGACACTTCTTTCCAGTTCAAGGACAGATGGAGGAGAAGAGGATTGGTCTGCTGCTGCTGC AGCATCCCACAGAAGCAACCTAGCTTCGTGGCTGATGAATCCGAGGTAGTGAATTGCCATTGTTGTTGCTAATTTGGTTA TGCTTCAATTCGATGTTTTTGTGTTTGCTGTTTTCTACGTCTTAGAATCATACTTTATTAGTACTAGTTTAAGGTAGAGC CTTCCCAAAGCTTGGCTATGCTTGATTTTTATGAAACACCAAAAGTTGATCTCTCTCTAACAAACACTAATAAAAGGATG AAAGCTCTAGTTGTGAGTTCACAATAGAGGTTAATATTTGTTTAGTCTTCCTCTTTGCTATAGTAGAAGATGGGTTGGAG AGCCCTTTATCTATTCAGAATTTGGACATTTTAGTCCATAAGTTTTAGCTTTTAGCATGAAGTGGAGGACTGGAGTCTGG AAGGGTTCTGATTAGGACCATTTTTCCTTCCGCATGATCTTTTGCATGACAAAAATTTACATATATTGCTTAAGTGTTCT TGCCTTGAATCAATGTCTTTTTCTTGGGGATGATCCCTTTCAAACTAATCAGCCAATGAGAATCATAGATTACTTTGAGC TCGTAGCTTGATCCTTCGGTAAATCATTGTCTCAGTTTAGATGAGAAATGATAGAGTAATGACAATCAATCACTCAGTGT ACTGTTAAATACGATAAGAATGAGGTCTTGCAGGTGCAGTCTTGCATTGCGTGTATAAAGTATACATTCATGAGTTTGGA AGATGAATTTTTTATCTGTTGTATGATAATTCTTGAGATTTGAGAAGGTATGATACTATTACAGCCTAAAGAATTTACCA CTTTGTAAGAATCAAGGAAATAATCAAGGTTGTTTTGGAAATTCTGTGTTGATTCCTTCTTTTTGGAAATGTAATGTTCA ATCATGAATGGCTATAACTCCATTTGTAAGTACTTTATGACGTTCCTAAGCCCTGGCCTTCACTTAGCAGGCTGAAGCTA CTTATGGAATACTTCAAAATTTCGGTAGATTGCTTTTTTGCAATATGGTTTGTTGTTGGAAATGTATGGATCTTTGGGGG ACATTCATCTGCTAGTGAAGCTCCAAACATGTACAGGTATAGCCTTTTCAGCAGATCTTACATTTAATCGTCTGAATTTT CAGAGCCTCCAGATTATATCTGCTTCCTTTTGCTCTGCAGGTTATGTGTAGTGTTTCTTACTTTAAGCTGTATCGGTTAT GCTATGCCATTCATTCTATGTGCAACAATCTGCTGCTGTCTTCCTTGTTTAGTTTCCGTCCTTGGGATTAGAGAGGTTCT GACAGAAACCCATGGTGCAACCTCTGAAACCATTAATGCTTTACCAACTTACAAGTTCAAAATGAAGAAAAAGAAAACCA CGGATGAAAGCAACTCAGCTGTTAGTGAAGGTGGAATTGTGGCTAAAGGAACTGAAAAGGAACGAATGGTCTCTAAAGAA GATGCAGTAAGTACAAACTGATTATTCAAGATACTTCAGTAAAACTTATGATATCTATTTTGTTCCTTCAAGATTCTAGG TAGCTACGGTCTCTTTGAAACCTTTATCTGTGACAATAGAATCCTAAGATTTTTTTTTTGTCATATATGCCCAATCCATT TGGTGTTAGCACTAAATTATTAACTTTTCATATATGCAGAGCAAAAAAATCTATATTCGCTGCTTAGTTTCTGTAATCAT GTGATATTCTGAATTCAGAGCTGGTTTTGTTGTCCATGGGTTATTACTGATGTAAATAGAAACAACATAGGGAGGCCCTT TTACTTTCCTATCTGTGTCAATCTCTTTGTTCAGCATTAGTTTTTCCTATCATATCTCCTATCATTTTGGAAGTCAAGCA ATCATCATTGGAAATTTAGAAGCCCCGATTACTTGCTATTTCAGCTGTTTGTTGAATCAGTGACCGTAACCAAAGTATTA TCCCACTAGATCGTTGGCTATATGGATCACTTATCCATATTAAACATATCCGCGAGTTTTATGTTGGCTCCTGAAAGCCT AACACAGCCTTCCTCCTTCATTTGGGCTTAGGATCGGCTATGCAAAAGCATAAGCAGAGTTTGTTGAATCAGATTCCTAA TTTTCAAGTTTCCCTAGAATTAGTCTCTAAAAGATCTCACATCATTGTATGCCATTCTTCCTGGACCAGGACTTCGATTC TTCTTTTTTTGTGATGATTTCCGTTCCTTTTTATGTTTAGTTTGTCTACTGGACTTGACTGTGGTATTGTTGTACTTTCT GTGGTTTTCTGCAGGTTTGCTGCATCTGCTTGGCGACGTATGAAAATAATGATGAGCTGAGAGAATTGCCTTGTTCTCAT TTTTTCCACAAAGACTGTGTAGACAAGTGGTTAAAGATAAATGCATCATGTCCCCTTTGCAAGAGTGAGATTGGTGAGAA TGTAACAGGAACAGTCTCTGGAGAACATGCCACCCAACAATAGGGTGATAGGGAGGATTGAGATTGGCCTCATCATTACC TCATATTAATACACCTTCTACCCGTTTGGATGAAAACCAAAGAGCATTTATTGGAGCTTATTTAATGCATTTTGTAGCAG ATAAGCTCCAATAAACTCCAATAAGCCAGTATCCAAACAGACTCTTTGTATAGTTTTGTTAAGTCTTTCCTGTGCTGCCC TCTCTCCTCCTTGGATGGATTGATTCTGAGTTCATTCCTTCCATTCCATAAAGTTGGCTGATATGTGGCATAGCCTTCTG TAGTCTCGTTGTTATGTAGCTGTCTGTTGCTGAGATTGCAAGTGAATGGAAATCATACTTGTGCAGAGGTTCTTGATTCT CATATCTCACAAAGTTCAAGAAGAACTTCGGTGGGGAAGGAAACAAAAAAAGAGGAAAAGAAAATGAATGATAGAAATGA GAGTTCTAAATGTTAATCTGTGAAGAATATTTTGTAGCAATGATAAGGTTTGAATAATGATGATGATGCTCATACTGTAA AGGCACTTGTTTGTATAGATTATATTTATTCGCTTATTTTTGATGTGTTAATAAAAGAATCATTATTAAAATTACAATTG TTTTCCTACTAAAAAAATACACGCATTGAGCAACTTAAGGATAAACCATAATTTTCTAAACTTTTGTCTTTAACATGTGT CAAATTGTTTGGAAAATTGTAACTGTTTGGACACAAATAACTTTCACAGGATTTAATTTTGTGACTCTACCTTTATAAGA ATTTTACTTAACTACCGAT
CDS sequence (LotjaGi1g1v0389500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATGTTTTGTTTTCACCTCAACTGTGTCCTGAAGGTTCTTCTTCTTCTTCTTCCGACACTGACCCTTTGTTAATGGC GCGACCAACTCACCATGTGATTGACATAACCCCCAATTCTCAAGCTTCTACTTCTGCTGCTGATTCCTCTGTTGCCCATG ATTTTGGTGGTTCTAGATTGGTTGTTTCTTCTTCTGGGCCTTCAAATGGGTCCAATTCTAGGATGAGAGTGAGGCATGGA GAACAAAGGACGATTAGGAGTCCGTTGAATTCAGGGCTTTGGGTATCGCTTGAGGCTGCCTTGACACTCAGCCAGATTGT TGCTTCTGTTGTTGTTTTGTCGTTGTCGAGGCATGAGCATACGCGTGCTCCGTTGTTTGCTTGGATTGTGGGTTATGCTT CAGGGTGTGTTGCTACCCTTCCTCTACTTTTGTGGCGCTATTGTTATAATAACTGTGTAAGGGAGCTGGATTCATCTCAA GCTTCTCCTAGGATTCATGATACTTCAGGGACACTTCTTTCCAGTTCAAGGACAGATGGAGGAGAAGAGGATTGGTCTGC TGCTGCTGCAGCATCCCACAGAAGCAACCTAGCTTCGTGGCTGATGAATCCGAGGCTGAAGCTACTTATGGAATACTTCA AAATTTCGGTAGATTGCTTTTTTGCAATATGGTTTGTTGTTGGAAATGTATGGATCTTTGGGGGACATTCATCTGCTAGT GAAGCTCCAAACATGTACAGGTTATGTGTAGTGTTTCTTACTTTAAGCTGTATCGGTTATGCTATGCCATTCATTCTATG TGCAACAATCTGCTGCTGTCTTCCTTGTTTAGTTTCCGTCCTTGGGATTAGAGAGGTTCTGACAGAAACCCATGGTGCAA CCTCTGAAACCATTAATGCTTTACCAACTTACAAGTTCAAAATGAAGAAAAAGAAAACCACGGATGAAAGCAACTCAGCT GTTAGTGAAGGTGGAATTGTGGCTAAAGGAACTGAAAAGGAACGAATGGTCTCTAAAGAAGATGCAGTTTGCTGCATCTG CTTGGCGACGTATGAAAATAATGATGAGCTGAGAGAATTGCCTTGTTCTCATTTTTTCCACAAAGACTGTGTAGACAAGT GGTTAAAGATAAATGCATCATGTCCCCTTTGCAAGAGTGAGATTGGTGAGAATGTAACAGGAACAGTCTCTGGAGAACAT GCCACCCAACAATAG
Protein sequence (LotjaGi1g1v0389500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDVLFSPQLCPEGSSSSSSDTDPLLMARPTHHVIDITPNSQASTSAADSSVAHDFGGSRLVVSSSGPSNGSNSRMRVRHG EQRTIRSPLNSGLWVSLEAALTLSQIVASVVVLSLSRHEHTRAPLFAWIVGYASGCVATLPLLLWRYCYNNCVRELDSSQ ASPRIHDTSGTLLSSSRTDGGEEDWSAAAAASHRSNLASWLMNPRLKLLMEYFKISVDCFFAIWFVVGNVWIFGGHSSAS EAPNMYRLCVVFLTLSCIGYAMPFILCATICCCLPCLVSVLGIREVLTETHGATSETINALPTYKFKMKKKKTTDESNSA VSEGGIVAKGTEKERMVSKEDAVCCICLATYENNDELRELPCSHFFHKDCVDKWLKINASCPLCKSEIGENVTGTVSGEH ATQQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 25 | 25 | - | – | |
| Phobius | 1 | 92 | 92 | - | – | |
| MobiDBLite | 9 | 24 | 16 | - | – | |
| PANTHER | 30 | 404 | 375 | 4.6E-178 | – | |
| PANTHER | 30 | 404 | 375 | 4.6E-178 | – | |
| MobiDBLite | 62 | 81 | 20 | - | – | |
| TMHMM | 93 | 115 | 23 | - | – | |
| Phobius | 93 | 113 | 21 | - | – | |
| Phobius | 114 | 124 | 11 | - | – | |
| Phobius | 125 | 145 | 21 | - | – | |
| TMHMM | 125 | 147 | 23 | - | – | |
| Phobius | 146 | 211 | 66 | - | – | |
| TMHMM | 212 | 234 | 23 | - | – | |
| Phobius | 212 | 233 | 22 | - | – | |
| Phobius | 234 | 244 | 11 | - | – | |
| Phobius | 245 | 278 | 34 | - | – | |
| TMHMM | 249 | 283 | 35 | - | – | |
| Phobius | 279 | 404 | 126 | - | – | |
| Gene3D | 325 | 393 | 69 | 2.8E-20 | ||
| SUPERFAMILY | 336 | 391 | 56 | 5.46E-21 | – | |
| SMART | 343 | 385 | 43 | 0.0032 | ||
| CDD | 343 | 385 | 43 | 4.32604E-18 | – | |
| ProSiteProfiles | 344 | 385 | 42 | 12.652 | ||
| Pfam | 344 | 385 | 42 | 3.2E-13 | ||
| SMART | 344 | 384 | 41 | 3.6E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of LotjaGi1g1v0389500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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