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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0390200 |
| Transcript ID | LotjaGi1g1v0390200.1 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Syntaxin, putative; TAIR: AT3G24350.1 syntaxin of plants 32; Swiss-Prot: sp|Q9LK09|SYP32_ARATH Syntaxin-32; TrEMBL-Plants: tr|I3SC69|I3SC69_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0390200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:87345581..87351032) extracted from Lotus japonicus Gifu genome v1.2.
CCATAGTCTTCTGATTTTTTATGTCAGATTAAGACAAAGCTCAGCTAAGATTAATTCAATTCATTTCATGTTGACAAGCA CAATTAACACAAATAAGCGATTAACCAGAGAACAGGATCAAGTTCCAAATAGAGTAACGAGCTAGCTACTGCTACAACGC TCGCAATGAATCATCATCTTCATTCCCAAATGCAATCCAATCCCAATTAGACAGATCTAGGGTTTCCCTTTCTTTCTTCT TCACCGGAGCACCACCGCACGATCAACATTAACCCACCGCGAAGCCATGAAATCGGCACAGTCCTCATTCCGAGATCGGA CACACGAATTCCAAAACATTGCAGAGAGGTTGAAGAAATCAGGATCTGGACCCAATGGACCTGCCACCACCACCACCGCC ACCGCCTCCTCATCCAGATCGGAGGAACACCGTTCCGCTGTTGCTATGCAATCAGAATTCAACAAAAGAGCTTCCAAAAT CGGCTACGGGATTCACCAAACCTCTCAGAAGCTCTCCAAGCTCGCAAAACGTAAGCAATTCCATTCCGTAACTAACTAAC TAACTAACTACTCAATGCTAATTTATGCGATTTTGTAGAACTGTGTTAGTGGAATCAATAGCTTTGTGTTTGTGTTGATT CGCAGTGGCGAAACGGACTTCGGTTTTTGATGACCCTACCATGGAAATCCAAGAGCTTACTAGTGTTATCAAGCAAGATA TTACTGCGCTGAACTCTGCGGTTGTTGATCTTCAATTGGTTAGCAATTCTAGGAATGAGAGTGGAAACGCTTCGGCCGAC ACGACTAGCCATTCGTTCACGGTGGTGGATGACCTCAAGACGCGGTTGATGAGCACCACCAAGGAGTTTAAAGATGTTCT CACCATGAGAACTGAGGTAATGCATTGGTTTAGCATGGAAATTCATGTTAGTGCACATTTTCTATAGTCATTGATGTTTT GATGTTTGTTTTGATGAAGAACTTGAAAGTACATGAGAATAGAAGACAACTGTTTTCGTCCTCTGCTTCCAAGGAATCTG CAAATCCTTTCGTCCGTCAGCGGCCGTTAGCTACGAGAACGGCTGCTAGTGAATCTAATGCTCCTGCACCCCCATGGGCT AGTGGGCTGGGGTCCTCGTCGTCTTCTCAGTTGTTTCCTAAGTAAGTCTGTCATGCTTTCTTTCTTTGTTGCTTTGTTGC TTGTACACTGTAATAGGCCTTAGTTAAGCATGTGACTGACTTGAATAATTGAATTACTATTCTTTTTCATCAAATTAGCT TGTAGTATTATGCTTGAATAGATTATCAAGTGCATAGTTCTTGTTCCATGAAACGTGTGATTCTGTGTAAGCCTGTCTGA TAGTGGAGAATATAATAAGAATTATGGTCATATACCCTTCTTTTATTTATTTTCCTCAAATTGTTGTCGCAGTATAGCTT AATTTTCAAGAACAATATCGTAGCGATTGTACTGATCTTAGTTTCCTATCACGAGCTTTGTGTTTATCAGTCTGTTGTGA TAGTATTTTGAGATTACCTAGCACAATCCTGAGTTAGTTATTTCATTTGCTTTATTGTGGAATTCTTTTGCTTGTGTGCT TACAAGTGGACCTGTCAAACAAGGCTACCTTGCTCAGACTTGTTTTGTTGGGTTGGTTGCGCCCAACAAAACTATGCCCC TAATGAAACTTTTCCTTGCCTAGAGATACTGGGTGTTTAAGCAGTCCAGCCAAATATAAATGTAAAAAGCAGGCTGGTCT ATTCCATCTATTTGCCTTTTTGTCTTCGCATTTTAAGGTTGCTTCATGTTGGGTTGAATTATATATGAAACCATGGTTTC CTACAATTTTCTTTTTGATATCCACAGGAAGCAGGTTGATGGGGAGAGTCAACCGTTGCTGCAACAACAACAACAGCAAC AGCAGCAGCAGTTAGTCCCACTGCAAGACAGTTACATGCAAAGCAGAGCTGAGGCTCTTCAGAATGTTGAGTCCACTATT CATGAGCTCAGCAACATCTTTAATCAACTAGCAACACTTGTTTCCCAACAAGGAGAAGTTGCCATCAGGTTTTTTGTCTC ACTTGTGTATTATCCTTTATTACTTTATTCCAATACGATGTATGATGTATGTTACTATTTGGTACTTGCTTACTTGATTT GTCAGTAATTCCAATTTCAAATGAGCCGATGCCACTTATATTCACTGTGAGATTAAGTTTGAGCTTTGACTTTAATTAGC TTGTATTATGTGTAGCAAACCCTATCTTTGGTTTGTGGTTGTCTGTGGGAGATCATTTGGTTGTTTACTTCTAAATTATG AGTCTTCTGACCATAAGATTGTCATCTTTGTCCGTACCATGTTTGAATTGCTTGTTTTGCTGCTTAATGAGCTGAGAAAT GACTTGGATAGAAATTTAGCTCATATAAAGTACTAGGCGAATTCTAAAGTGTATGTACATAAGGTTACTTGTATGAAGGA GAAGATTGGGTATTTTACTACATATTGATAAAGGTGTGGATTGAGTATTGACTGGTCTGTTTAACTGTTAAATTGCCTGT TTTGCTGGTTTCTGAGTGTGAGTGGTGAATTGACTTTTTAGCCTCCTCTAAAATACAAGGTGAACTTTACAGAGTAAGGT GCAAGTAGATAGCCGTGGATGAAAAAGTTAGCAGGTTGAGTCATGTTAACTTCAGGGAAAGTTCCTTGGACTTCAAAAAA TTATGAACCTTTCATGTCTTCTAATGAACCTTTCACTTGAGCTTTGTTTCTCTAACATGCAGTTTACACTCATAGGCCTT GCCTTCAGCTAATAACTTAATTACTTCTTTGATCCTATTTGTTCTTATGGAAATCTAATGATCTTGGCATAGAATAGATA CATACATTTTATCCTGGTTACCAACAGTTATAATTATTCTCTCCTCTTTGGTTTAGGGCTAGATTGGATATTACCAATGA AAGTTGAGGTGTTCAGTTTATAGTTTATGCCCTTTTCCGTCCTTGTTTAATGTTTATGACTCTTCTTGTATTTTGTTTTT TTCCGAGTGCTTGTTTTGTCGTTCTTGTTTATGACTCTTCATGTGTTTTGTTTTTTTCCGAGTGCTTGTTTTGTCGTTTA TTTCTGTAGTTTGTCATGGGATATGTTGAAGTTTGGGTGTATATAGGAGTAGGATACTGTAAACTAATTTGCGCTTGTCC TTTATCGATTCTCTGATGAAGATTGATTTGATGGTTGGCTTTTTCTGCTGGAAGTGTCAGAGGCAGTTAAAGCCTTGTTT TTCTATAATGCTTGTTTCATCTAATACTTGTATTTATCTTGATTACATTATCCTGATTTTGGATGTAGTCTTTTTATTAA TTTCTTAATTTCTGCGATTCCTATTAAAGAGAATCTGCTAAACTGAGAAGTAAAAGAGGAGAAAGTCCTGCAATCAATAT TTTTAAAACCAATGAGATAACTCGTTTATTACCTTAAACATGCATTAATTTAGTAGCAAAAAGGTGAAACTCTAGGTAAA GTTTGTACAATGTTGAGAATGATGAATCATGAATGAATCCAATTTTGAAGATCTTGCATAATCTTTTCACTTTAGGTGTT ATGATTCGACTCCTTATGCGTTATTATGAAAATATAATTTTTTTTAGTATTTTGTTATTTTGAATTTCTGATGATTAGAT GTGGTATTAGTTTTTATCCCTTTAAATCTTTGTAATTTTTTTTGTTTGTGTGTATCAGACTATCAGTATATGTTATTTGC TGAATTAGTTTTAGCATGGCAACCGGGCAGGCAGGTGCAGGTTTTGCCTCAACCTAACCCTGCTCTTCGTTCTTAAGGAT AAAAAATTTGAACCTGTTCTCGCGCTTTACCTGCTTGTCCAGTACCTATGAATTTTTCAAATTAATTTTGTACAGTGTTT AAAATCATAATCACAAAGTTAATGTACTATCTCATATAAAATAAGATTCATGTCTAGTATTAGTGTGTGAAAATGATAAG ATAAGTTAATATCATTGTACTTATTGTAGCTAAGCCTAAGATAAGCATAAAAGTTATGGTGACAAGGAGTGTGGGGTGTT TTGACCCTATCCCTGCATCTGCCTTCCCTGTCCAATGTTGGAGCCGGTTTCGCTTATGTTTGTTTTTAAGTTACGTCGAC ATAATGTAAATGAGACTCACAGTCCTCTTTCACGTGTGCATGGGGATTCATTATTCAGAATTATGAGGTGGATACTGGTG TTGTAATGGAAAAACAAACATGTTTCGTGGCGGGGCTAGTTGAGTATCCAAATGTTAGGATGGGGTTACTGAGCGTACCT CATTAGATATTAACTAAAGTGGCAGTGTACTGAGTTGGCTTTGGCTTTCCATGGGTTGCTTGAACTTGCTTGTTTGACCA CCTTTCCGCTCATTTTGAACTCGTGTAATTTGATTTATGATTAGTTGAATAGTCTTTGCTTGATTTTTGCCTTTTCATAT TGGCCAATTGAGACACTGGTGGGCTTAACAGTGGCAGTACTTAATTTGCAGGATTGATGAAAACATGGATGATACATTGG CAAACGTAGAAGGGGCACAAGGTGCTTTGTTGAAGTATATGAACAGCATATCTTCTAATAGGTGGCTGATGATCAAGATT TTCTTTGTATTAATATTTTTCCTTACGGTTTTCTTATTTTTTGTGGCATAATCATTTCGGAGAAACGACGATTCAAATGG CAATACAAATGACGGCCTTCTCACTGATGATTAGCCTCCTGTATTCCAATAATATTTCTATCTCCAAATATATGTTCATT CCGGCAGAGTTTAGCTTAGGACCTTGTGTGTCAAATTTTATACTTGTAAGTATTGATACATATAACAAGGTAAAGAACTA TATGCATTGCATATTCTATGTGTATCTTTGTGATTTGTGGTGATTATTATGCAGTGGGGGCTCTCTGTAATATTGAGGGC AAAGAAAAGCAATGACTAGATAACTCTGTTCATGGGTCCCAGAAAAATAAGCAAAGCAAAATCTGATTGTATTGTATTGC AATTACAATTGCTATATTAATCATTTCCAGTGTTCTGCTGAGTGTTGTCAAATACTAGCAGATATCGCGGCGCTTTAGCG TAATGCAGTGAGGGTTGGCCGCTATCCGCTATTTTCTGCTACTATATTTAGAACTGGAAATAATAACATATCTTGAGATA TCTGTAACTTGTTATGATTGGAAATAGCTCAGGTGCAAACCATACCATTTTTTGTGTGAGCTGAATGTACGACATAGTAT ACTATTGTTTTGAGAAAAAACCGCAAATACTATGTACAAACTGTGTCTGAAGAGAACGGTGATTTTACGCGTTTATACTC GTTTACGACTCTAGTAGTGTTTTGTTTCTTGTTCTCATCCTAATTGCTGTACTATTTTGAAAGAAACAAACATGTCCACA TTAATTAATTGC
CDS sequence (LotjaGi1g1v0390200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAATCGGCACAGTCCTCATTCCGAGATCGGACACACGAATTCCAAAACATTGCAGAGAGGTTGAAGAAATCAGGATC TGGACCCAATGGACCTGCCACCACCACCACCGCCACCGCCTCCTCATCCAGATCGGAGGAACACCGTTCCGCTGTTGCTA TGCAATCAGAATTCAACAAAAGAGCTTCCAAAATCGGCTACGGGATTCACCAAACCTCTCAGAAGCTCTCCAAGCTCGCA AAACTGGCGAAACGGACTTCGGTTTTTGATGACCCTACCATGGAAATCCAAGAGCTTACTAGTGTTATCAAGCAAGATAT TACTGCGCTGAACTCTGCGGTTGTTGATCTTCAATTGGTTAGCAATTCTAGGAATGAGAGTGGAAACGCTTCGGCCGACA CGACTAGCCATTCGTTCACGGTGGTGGATGACCTCAAGACGCGGTTGATGAGCACCACCAAGGAGTTTAAAGATGTTCTC ACCATGAGAACTGAGAACTTGAAAGTACATGAGAATAGAAGACAACTGTTTTCGTCCTCTGCTTCCAAGGAATCTGCAAA TCCTTTCGTCCGTCAGCGGCCGTTAGCTACGAGAACGGCTGCTAGTGAATCTAATGCTCCTGCACCCCCATGGGCTAGTG GGCTGGGGTCCTCGTCGTCTTCTCAGTTGTTTCCTAAGAAGCAGGTTGATGGGGAGAGTCAACCGTTGCTGCAACAACAA CAACAGCAACAGCAGCAGCAGTTAGTCCCACTGCAAGACAGTTACATGCAAAGCAGAGCTGAGGCTCTTCAGAATGTTGA GTCCACTATTCATGAGCTCAGCAACATCTTTAATCAACTAGCAACACTTGTTTCCCAACAAGGAGAAGTTGCCATCAGGA TTGATGAAAACATGGATGATACATTGGCAAACGTAGAAGGGGCACAAGGTGCTTTGTTGAAGTATATGAACAGCATATCT TCTAATAGGTGGCTGATGATCAAGATTTTCTTTGTATTAATATTTTTCCTTACGGTTTTCTTATTTTTTGTGGCATAA
Protein sequence (LotjaGi1g1v0390200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKSAQSSFRDRTHEFQNIAERLKKSGSGPNGPATTTTATASSSRSEEHRSAVAMQSEFNKRASKIGYGIHQTSQKLSKLA KLAKRTSVFDDPTMEIQELTSVIKQDITALNSAVVDLQLVSNSRNESGNASADTTSHSFTVVDDLKTRLMSTTKEFKDVL TMRTENLKVHENRRQLFSSSASKESANPFVRQRPLATRTAASESNAPAPPWASGLGSSSSSQLFPKKQVDGESQPLLQQQ QQQQQQQLVPLQDSYMQSRAEALQNVESTIHELSNIFNQLATLVSQQGEVAIRIDENMDDTLANVEGAQGALLKYMNSIS SNRWLMIKIFFVLIFFLTVFLFFVA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 49 | 49 | - | – | |
| PANTHER | 1 | 344 | 344 | 2.1E-166 | – | |
| MobiDBLite | 1 | 20 | 20 | - | – | |
| Phobius | 1 | 323 | 323 | - | – | |
| PANTHER | 1 | 344 | 344 | 2.1E-166 | – | |
| Pfam | 6 | 24 | 19 | 8.5E-4 | ||
| MobiDBLite | 28 | 49 | 22 | - | – | |
| SUPERFAMILY | 55 | 308 | 254 | 1.06E-43 | ||
| MobiDBLite | 196 | 243 | 48 | - | – | |
| MobiDBLite | 197 | 243 | 47 | - | – | |
| Gene3D | 238 | 345 | 108 | 1.8E-16 | – | |
| SMART | 248 | 315 | 68 | 1.9E-15 | ||
| ProSiteProfiles | 253 | 315 | 63 | 17.281 | ||
| CDD | 256 | 334 | 79 | 5.4385E-42 | – | |
| ProSitePatterns | 259 | 298 | 40 | - | ||
| Pfam | 290 | 341 | 52 | 3.1E-15 | ||
| TMHMM | 322 | 344 | 23 | - | – | |
| Phobius | 324 | 344 | 21 | - | – | |
| Phobius | 345 | 345 | 1 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | SNAP receptor activity | Acting as a marker to identify a membrane and interacting selectively with one or more SNAREs on another membrane to mediate membrane fusion. | ||
| Biological process | Intracellular protein transport | The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Vesicle-mediated transport | A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane. |
Expression pattern of LotjaGi1g1v0390200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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