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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0390200 |
| Transcript ID | LotjaGi1g1v0390200.4 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Syntaxin, putative; TAIR: AT3G24350.1 syntaxin of plants 32; Swiss-Prot: sp|Q9LK09|SYP32_ARATH Syntaxin-32; TrEMBL-Plants: tr|I3SC69|I3SC69_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0390200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:87346342..87350752) extracted from Lotus japonicus Gifu genome v1.2.
GAAGCCATGAAATCGGCACAGTCCTCATTCCGAGATCGGACACACGAATTCCAAAACATTGCAGAGAGGTTGAAGAAATC AGGATCTGGACCCAATGGACCTGCCACCACCACCACCGCCACCGCCTCCTCATCCAGATCGGAGGAACACCGTTCCGCTG TTGCTATGCAATCAGAATTCAACAAAAGAGCTTCCAAAATCGGCTACGGGATTCACCAAACCTCTCAGAAGCTCTCCAAG CTCGCAAAACGTAAGCAATTCCATTCCGTAACTAACTAACTAACTAACTACTCAATGCTAATTTATGCGATTTTGTAGAA CTGTGTTAGTGGAATCAATAGCTTTGTGTTTGTGTTGATTCGCAGTGGCGAAACGGACTTCGGTTTTTGATGACCCTACC ATGGAAATCCAAGAGCTTACTAGTGTTATCAAGCAAGATATTACTGCGCTGAACTCTGCGGTTGTTGATCTTCAATTGGT TAGCAATTCTAGGAATGAGAGTGGAAACGCTTCGGCCGACACGACTAGCCATTCGTTCACGGTGGTGGATGACCTCAAGA CGCGGTTGATGAGCACCACCAAGGAGTTTAAAGATGTTCTCACCATGAGAACTGAGGTAATGCATTGGTTTAGCATGGAA ATTCATGTTAGTGCACATTTTCTATAGTCATTGATGTTTTGATGTTTGTTTTGATGAAGAACTTGAAAGTACATGAGAAT AGAAGACAACTGTTTTCGTCCTCTGCTTCCAAGGAATCTGCAAATCCTTTCGTCCGTCAGCGGCCGTTAGCTACGAGAAC GGCTGCTAGTGAATCTAATGCTCCTGCACCCCCATGGGCTAGTGGGCTGGGGTCCTCGTCGTCTTCTCAGTTGTTTCCTA AGTAAGTCTGTCATGCTTTCTTTCTTTGTTGCTTTGTTGCTTGTACACTGTAATAGGCCTTAGTTAAGCATGTGACTGAC TTGAATAATTGAATTACTATTCTTTTTCATCAAATTAGCTTGTAGTATTATGCTTGAATAGATTATCAAGTGCATAGTTC TTGTTCCATGAAACGTGTGATTCTGTGTAAGCCTGTCTGATAGTGGAGAATATAATAAGAATTATGGTCATATACCCTTC TTTTATTTATTTTCCTCAAATTGTTGTCGCAGTATAGCTTAATTTTCAAGAACAATATCGTAGCGATTGTACTGATCTTA GTTTCCTATCACGAGCTTTGTGTTTATCAGTCTGTTGTGATAGTATTTTGAGATTACCTAGCACAATCCTGAGTTAGTTA TTTCATTTGCTTTATTGTGGAATTCTTTTGCTTGTGTGCTTACAAGTGGACCTGTCAAACAAGGCTACCTTGCTCAGACT TGTTTTGTTGGGTTGGTTGCGCCCAACAAAACTATGCCCCTAATGAAACTTTTCCTTGCCTAGAGATACTGGGTGTTTAA GCAGTCCAGCCAAATATAAATGTAAAAAGCAGGCTGGTCTATTCCATCTATTTGCCTTTTTGTCTTCGCATTTTAAGGTT GCTTCATGTTGGGTTGAATTATATATGAAACCATGGTTTCCTACAATTTTCTTTTTGATATCCACAGGAAGCAGGTTGAT GGGGAGAGTCAACCGTTGCTGCAACAACAACAACAGCAACAGCAGCAGCAGTTAGTCCCACTGCAAGACAGTTACATGCA AAGCAGAGCTGAGGCTCTTCAGAATGTTGAGTCCACTATTCATGAGCTCAGCAACATCTTTAATCAACTAGCAACACTTG TTTCCCAACAAGGAGAAGTTGCCATCAGGTTTTTTGTCTCACTTGTGTATTATCCTTTATTACTTTATTCCAATACGATG TATGATGTATGTTACTATTTGGTACTTGCTTACTTGATTTGTCAGTAATTCCAATTTCAAATGAGCCGATGCCACTTATA TTCACTGTGAGATTAAGTTTGAGCTTTGACTTTAATTAGCTTGTATTATGTGTAGCAAACCCTATCTTTGGTTTGTGGTT GTCTGTGGGAGATCATTTGGTTGTTTACTTCTAAATTATGAGTCTTCTGACCATAAGATTGTCATCTTTGTCCGTACCAT GTTTGAATTGCTTGTTTTGCTGCTTAATGAGCTGAGAAATGACTTGGATAGAAATTTAGCTCATATAAAGTACTAGGCGA ATTCTAAAGTGTATGTACATAAGGTTACTTGTATGAAGGAGAAGATTGGGTATTTTACTACATATTGATAAAGGTGTGGA TTGAGTATTGACTGGTCTGTTTAACTGTTAAATTGCCTGTTTTGCTGGTTTCTGAGTGTGAGTGGTGAATTGACTTTTTA GCCTCCTCTAAAATACAAGGTGAACTTTACAGAGTAAGGTGCAAGTAGATAGCCGTGGATGAAAAAGTTAGCAGGTTGAG TCATGTTAACTTCAGGGAAAGTTCCTTGGACTTCAAAAAATTATGAACCTTTCATGTCTTCTAATGAACCTTTCACTTGA GCTTTGTTTCTCTAACATGCAGTTTACACTCATAGGCCTTGCCTTCAGCTAATAACTTAATTACTTCTTTGATCCTATTT GTTCTTATGGAAATCTAATGATCTTGGCATAGAATAGATACATACATTTTATCCTGGTTACCAACAGTTATAATTATTCT CTCCTCTTTGGTTTAGGGCTAGATTGGATATTACCAATGAAAGTTGAGGTGTTCAGTTTATAGTTTATGCCCTTTTCCGT CCTTGTTTAATGTTTATGACTCTTCTTGTATTTTGTTTTTTTCCGAGTGCTTGTTTTGTCGTTCTTGTTTATGACTCTTC ATGTGTTTTGTTTTTTTCCGAGTGCTTGTTTTGTCGTTTATTTCTGTAGTTTGTCATGGGATATGTTGAAGTTTGGGTGT ATATAGGAGTAGGATACTGTAAACTAATTTGCGCTTGTCCTTTATCGATTCTCTGATGAAGATTGATTTGATGGTTGGCT TTTTCTGCTGGAAGTGTCAGAGGCAGTTAAAGCCTTGTTTTTCTATAATGCTTGTTTCATCTAATACTTGTATTTATCTT GATTACATTATCCTGATTTTGGATGTAGTCTTTTTATTAATTTCTTAATTTCTGCGATTCCTATTAAAGAGAATCTGCTA AACTGAGAAGTAAAAGAGGAGAAAGTCCTGCAATCAATATTTTTAAAACCAATGAGATAACTCGTTTATTACCTTAAACA TGCATTAATTTAGTAGCAAAAAGGTGAAACTCTAGGTAAAGTTTGTACAATGTTGAGAATGATGAATCATGAATGAATCC AATTTTGAAGATCTTGCATAATCTTTTCACTTTAGGTGTTATGATTCGACTCCTTATGCGTTATTATGAAAATATAATTT TTTTTAGTATTTTGTTATTTTGAATTTCTGATGATTAGATGTGGTATTAGTTTTTATCCCTTTAAATCTTTGTAATTTTT TTTGTTTGTGTGTATCAGACTATCAGTATATGTTATTTGCTGAATTAGTTTTAGCATGGCAACCGGGCAGGCAGGTGCAG GTTTTGCCTCAACCTAACCCTGCTCTTCGTTCTTAAGGATAAAAAATTTGAACCTGTTCTCGCGCTTTACCTGCTTGTCC AGTACCTATGAATTTTTCAAATTAATTTTGTACAGTGTTTAAAATCATAATCACAAAGTTAATGTACTATCTCATATAAA ATAAGATTCATGTCTAGTATTAGTGTGTGAAAATGATAAGATAAGTTAATATCATTGTACTTATTGTAGCTAAGCCTAAG ATAAGCATAAAAGTTATGGTGACAAGGAGTGTGGGGTGTTTTGACCCTATCCCTGCATCTGCCTTCCCTGTCCAATGTTG GAGCCGGTTTCGCTTATGTTTGTTTTTAAGTTACGTCGACATAATGTAAATGAGACTCACAGTCCTCTTTCACGTGTGCA TGGGGATTCATTATTCAGAATTATGAGGTGGATACTGGTGTTGTAATGGAAAAACAAACATGTTTCGTGGCGGGGCTAGT TGAGTATCCAAATGTTAGGATGGGGTTACTGAGCGTACCTCATTAGATATTAACTAAAGTGGCAGTGTACTGAGTTGGCT TTGGCTTTCCATGGGTTGCTTGAACTTGCTTGTTTGACCACCTTTCCGCTCATTTTGAACTCGTGTAATTTGATTTATGA TTAGTTGAATAGTCTTTGCTTGATTTTTGCCTTTTCATATTGGCCAATTGAGACACTGGTGGGCTTAACAGTGGCAGTAC TTAATTTGCAGGATTGATGAAAACATGGATGATACATTGGCAAACGTAGAAGGGGCACAAGGTGCTTTGTTGAAGTATAT GAACAGCATATCTTCTAATAGGTGGCTGATGATCAAGATTTTCTTTGTATTAATATTTTTCCTTACGGTTTTCTTATTTT TTGTGGCATAA
CDS sequence (LotjaGi1g1v0390200.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAATCGGCACAGTCCTCATTCCGAGATCGGACACACGAATTCCAAAACATTGCAGAGAGGTTGAAGAAATCAGGATC TGGACCCAATGGACCTGCCACCACCACCACCGCCACCGCCTCCTCATCCAGATCGGAGGAACACCGTTCCGCTGTTGCTA TGCAATCAGAATTCAACAAAAGAGCTTCCAAAATCGGCTACGGGATTCACCAAACCTCTCAGAAGCTCTCCAAGCTCGCA AAACTGGCGAAACGGACTTCGGTTTTTGATGACCCTACCATGGAAATCCAAGAGCTTACTAGTGTTATCAAGCAAGATAT TACTGCGCTGAACTCTGCGGTTGTTGATCTTCAATTGGTTAGCAATTCTAGGAATGAGAGTGGAAACGCTTCGGCCGACA CGACTAGCCATTCGTTCACGGTGGTGGATGACCTCAAGACGCGGTTGATGAGCACCACCAAGGAGTTTAAAGATGTTCTC ACCATGAGAACTGAGAACTTGAAAGTACATGAGAATAGAAGACAACTGTTTTCGTCCTCTGCTTCCAAGGAATCTGCAAA TCCTTTCGTCCGTCAGCGGCCGTTAGCTACGAGAACGGCTGCTAGTGAATCTAATGCTCCTGCACCCCCATGGGCTAGTG GGAAGCAGGTTGATGGGGAGAGTCAACCGTTGCTGCAACAACAACAACAGCAACAGCAGCAGCAGTTAGTCCCACTGCAA GACAGTTACATGCAAAGCAGAGCTGAGGCTCTTCAGAATGTTGAGTCCACTATTCATGAGCTCAGCAACATCTTTAATCA ACTAGCAACACTTGTTTCCCAACAAGGAGAAGTTGCCATCAGGATTGATGAAAACATGGATGATACATTGGCAAACGTAG AAGGGGCACAAGGTGCTTTGTTGAAGTATATGAACAGCATATCTTCTAATAGGTGGCTGATGATCAAGATTTTCTTTGTA TTAATATTTTTCCTTACGGTTTTCTTATTTTTTGTGGCATAA
Protein sequence (LotjaGi1g1v0390200.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKSAQSSFRDRTHEFQNIAERLKKSGSGPNGPATTTTATASSSRSEEHRSAVAMQSEFNKRASKIGYGIHQTSQKLSKLA KLAKRTSVFDDPTMEIQELTSVIKQDITALNSAVVDLQLVSNSRNESGNASADTTSHSFTVVDDLKTRLMSTTKEFKDVL TMRTENLKVHENRRQLFSSSASKESANPFVRQRPLATRTAASESNAPAPPWASGKQVDGESQPLLQQQQQQQQQQLVPLQ DSYMQSRAEALQNVESTIHELSNIFNQLATLVSQQGEVAIRIDENMDDTLANVEGAQGALLKYMNSISSNRWLMIKIFFV LIFFLTVFLFFVA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 49 | 49 | - | – | |
| Phobius | 1 | 311 | 311 | - | – | |
| PANTHER | 1 | 332 | 332 | 2.1E-156 | – | |
| PANTHER | 1 | 332 | 332 | 2.1E-156 | – | |
| MobiDBLite | 1 | 20 | 20 | - | – | |
| Pfam | 6 | 24 | 19 | 8.1E-4 | ||
| MobiDBLite | 28 | 49 | 22 | - | – | |
| Gene3D | 51 | 296 | 246 | 1.9E-16 | – | |
| SUPERFAMILY | 55 | 296 | 242 | 1.14E-43 | ||
| MobiDBLite | 196 | 231 | 36 | - | – | |
| SMART | 236 | 303 | 68 | 1.9E-15 | ||
| ProSiteProfiles | 241 | 303 | 63 | 17.281 | ||
| CDD | 244 | 322 | 79 | 4.28523E-42 | – | |
| ProSitePatterns | 247 | 286 | 40 | - | ||
| Pfam | 278 | 329 | 52 | 2.9E-15 | ||
| TMHMM | 310 | 332 | 23 | - | – | |
| Phobius | 312 | 332 | 21 | - | – | |
| Phobius | 333 | 333 | 1 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | SNAP receptor activity | Acting as a marker to identify a membrane and interacting selectively with one or more SNAREs on another membrane to mediate membrane fusion. | ||
| Biological process | Intracellular protein transport | The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Vesicle-mediated transport | A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane. |
Expression pattern of LotjaGi1g1v0390200.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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