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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0393200 |
| Transcript ID | LotjaGi1g1v0393200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Replication protein A 32 kDa subunit-like protein; TAIR: AT2G24490.1 replicon protein A2; Swiss-Prot: sp|Q9ZQ19|RFA2A_ARATH Replication protein A 32 kDa subunit A; TrEMBL-Plants: tr|I3SHT3|I3SHT3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0393200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:87774747..87780576) extracted from Lotus japonicus Gifu genome v1.2.
CGGGAAACGATATAAATCACCTTACTACCATGATCATTCAGCCATACCTCTCTCTCTCTTAACTTCCACGCATCGATCTC GTCGATTTCGCTTCCGTCTTAGGGTTTCAGTCCAAAATGTTATCGTCCTCCACCAACTTCGACGCTAACTCAGCCTTCTC CGGCGGCGGATTCATGACCACCGACTCCTCACACCACTCCGACTCATCCCCAGCACCCCTCAAAGTATCCCCTTAATCCC AATCAAATCTTCAATTTCATTTCTATTTTTACCACGCATCAATTCAATTTTCCATTTCTGCTTTCAATTTCTGTACTAAT TGTGCTTTCTATTTCGTCGTTAAAGAGCCGTGACACTCAGGGTTTGGTTCCAGTCACAGTGAGGCAGATAAGTGAGGCTT CTCACTCTGGTGATGACAAGTCCAATTTCGTAATCAACGGTGTCGGTCTCACCAATGTACGATTCGATTCCATTTCATTG TGATCTGATTTTATTACTTTTTCTCGTTTGAATTTGTTACATTGACATTTATTTTATGCATTTACTATGATTAGGTAACC TTGGTTGGAATGGTGTTTGAGAAAGTTGAGAAAAACACTGAAGTTAACTTTGTTTTAGATGATGGAACAGGAAGAATCAA ATGTAGGAGATGGTAGGTTACACTTGATAAATGCTATCTTTAATCAAACCCTCAATTTGTATTTTTTTTTTATGTAGTTT ACACATTTTTCCCAGTCATTTATGAGGAAAGTTTTCGCAACATATGCTGTACTCTGAGTCTCATTTTGGTTGTTTAATCA GGGTGAATGAAACTTATGATACGAAGGAAATGGATCAAATACAGTAAGTTTCAACCACTGATTTGCTAATGTATATATCA CACTTATTGGTTCTTACCTTGTCATATCATTCAATGATAGGGACGGTATGTATGTTCGCCTTTATGGCCATTTGAAGAGC TTTCAAGGTGTAAGGCAACTCGTTGCCTTCTCTGTGAGGTGCGTGTACTAAACTGTCTAAACCAATTTCATTAGGCCCCG TTTGGATACCAGCTTATTAGAGCTTATTGGAGCTTATCTACTAAAAAAAGCACTAAATAAGCTCCAATAAGTGCTTTTCA GTTTGCATCCAAACAGGATATCTTATCAGCTGGGAGAGAATTGTTTATTTACTGAGGTGCCACTTTGGAGGCTCAGCTCT ATGTTGTTCAATAGGGTCTTACACATTTTGCCTAGTAGTTAGCCTAATGGGAGAAAATGAAAAATTGTGTCGTGGGAAGA AATTAGAGATGATTCATGCTAGATCTCTAAAACTGCCCAAACAAATTGCACCTATCTAATTGCGATTCTTCGATCTGAAG AGGTTTTAAATTAAATACATGTAGTAGTTGAGCTTGAGGCTTATTTACCATGATCCTTTGATTGCCATTCTTCCCGCTGT ATGACCATGATCTCATTGGCATACTGATTGACTGGACCAGTGGGACATAGAATTAATGCATGAATGCCACATTCTTTTTG TTCTCTATGGCGATTCTTTTGAATAATCATGTTCTCATTGAAAAGGAAAAAGGGAAGGGATCAGGAGGATAGGATTTAGA TCCTGTTATTTGTTATCCAGGGGAGGTCAATGTTTTTCAAATGCAGACTATTCACATTTAATTATAGAGGAATGCTAGCA AACATCCTTCAATACACTCCACGTGATTGGTTTATTTTCTAAAAAGTCAATTTTTTTAAAAGGTGAGACACACATGTTGA TTTTTTTTAAAAAGACCAATTATAGGAAGTGTTGGAGGGAGTGTGTTGCTAGCAATCCTTTTAATAATATTATGCCAACT GAGGTTGGGAGCTATTGCTGATAATTTAAATTATAGGATATGGAGATACACATGATATATAAGTCTTATGAATAATTTGA ATGGCAGGGCAATATATGCTGAATTATATTTGCTACTGGTGTATACTTGACTGTTCAAATGGCTTTAATTGATGGGTGTA TAAGTATCAGAGGGCCTTCTTAGTATGTGTTAGTTTCCTTCCGTTTTGTTTTAAGCATTGTGGTTATGAATTTGTTCTCT ATTTTATTCAGATATAAAATTATTCTTTTGAGGCTTAAATATGTTGGGGGCCCCTATAAAATAGGGGTCCTTTGGTTTAA GCCCCTACAAAATTTTTTCTTGGGAATAAGCCCCTAATGAGAAAATAATATATAGTGATAAGCCCCTGTCGTCAACTTCC GTTAAAAAATATATGAGTCAGCAAACGGAGCTGACGTGGACCTTTGCCACCTCATCAAGTGGGCCCACAAGCTGCTGACG TGGAAATGAGAAGAGAAATATGAAAATGCCAAATGTGGGATTTGAACCCAAGACCTAGAGCATAATGGGCAACATCCTTC CCACTAGGCTACAAGCTGCATCATTAGTATAAGTGCAAAATTTAATATATATCTTATTTAAACTGAAGCTGCTAATATTT CAACCAAAAATTTAAAAATGTCCTAAGCATGATTTGAACCCAAAACATAGAGGTTCATGGAGGAGGCTCTAACCACTAAG TCAATGCCTAATTTATGCATGTATTTTTAGCGCAAAACTAAATATATATTTAAAAACAAACTGATAATGCTAAATAAATT TGATGTGGTAGTTCTAAAAATTACATTTTTAGGCTCTTATACGCTCTTATATAATGTATCAATTGGAGTTCAAAAAAATA TAATGTATCAATTTGAAACAAAATAAAATATTAAATGTAAATAGAAAAACATATTTACAAAACTTTAAAACGTAAAAAAG TTAAATCTTACAAATTTATTAGAGTTCATATATTGACTTCTTTTAAGTACTAATGAGTATATATACTGAAAGAACAAAAT AATAGTTTTTTATGATTTAAGTGGGGTTGAATTCTTGTTCTTTTTTTTACATAATATATATATATATATATATATTGTTG TGCGCATGAATAACAAAATGAGCCAGTGGCTCAATTGTAAGGACATTGAGTATGATCCTCCATGTTATGGTGTTTTTAAA AAAAATTGTCAGTTTAAATGAGATATATATCAAATTTTGCACTTGTATTAAAGATGCAGCTTGTAGCCTAGTGGGAAGGA TGTTGCCCATTATGCTCTAGGTCTTGGGTTCAAATCCCACATTTGACATTTTCATATTTCTCTTCTCATTTCCATGTCAA CAGCTTGTGGGCCCACTTGATGAGGTGGCAAAGGTCCACGTCAGCTCCGTTTGTTGACTCATATTTTTTAACGGAAGTTG ACGGCAGGGGCTTATCACTATATATTATTTTCTCATTAGGGGCTTATTCCCAAGAAAAAATTTTGTAGGGGCTTAAACCA AAGGACCCCTATTTTATAGGGGCCTCCAACATATTTAAGCCTTCTTTTGATCAAAGCTAGAAAAAAAATCTTCTGCCTGT TTCAGATAGTTGGTGCAAGCTGCTAGTTTGTCTCTTGGCTATCAAAGTTTATGTTGTTTTCATCATTATATAATTTATCT AATTCTTTACAGAAGTTTACAAAATGTGGTTTTGGTTTTAGCATTCTGGATGATTTTGTATCGTTTATGATAGGAAGCAG AGCAGTTAGTTATAATAGTTTAGTTTGTATTGTTAAATGTAGGGAATGCTTATACAGTAGGAGTAGGTAGAAGGGGGTTG CATTGAGATTTGTTACCATTTGGGACTTGAGCATTAGCTCTACTGTGGATAGGGGAGACCCTCTGTGAAGGGGGAAATCT TGGAAGTAGAATTCTTCCCTAATGACTCTGTTTATTAATAAAAAATTATAGAAGTATTCTTTCTCTTCCCCTTCTTCCGC TGAAAGCCTGAAAGTTGAGTTAAATTTCTGGGTTGAATCAACTCTTTTAGTCAAACCTACAGATAACTTCATATTTATAG TTGTTTCTAAGCTTAACATATTGTCATTAAATCAATACCTGGAAATATTTAGGAAAAATTATTCTTTGATTTCTTTCTCC ATCTGTCTTTTTGTGATTGTATTGTCATTATTGATTATTGTGTTGTGTCTAATGGTTATCAGATAGAGACCCAAGAATTG GTTTATAAACGGGTTTTTCTGATAACTGATCTAATTCGGTTTCATTTTGAATAATAGTTATCTTATTGGTGAAAGGCCTA AGGCATGGACTGGTTTTTATTTTGTGGGGGAGTATGCACAATTTGTAAGGGAAAAAATACAGTGTTATGCATATATAAAT GAAGTGAAGATTGTCTCTACTCCCTATCGCCTAATTTTCTAAGTGTAATGACATATAAGATATGTAGGAATGCTGTTGCC CGTTGAAATTAATCTCATTATTTAATAGATAGTTTGACCAAACAAACATGTCATACACAATACTGTCAAAAAAAAATTGG TCAGACACAATCACATAAATTATCTGGTAGAAATTTATTGACCAAATATTAGATAATTGCCCTAAAGTCTATCCTTGATA TCTTTGTGAAATTGCATTTGAATATTCAAATTTCCCCAATATTAGTGATTCTTTGGCATGGCATTTGACGCTTCATCTGG TGGATGCAGACGAACCTTAAAACCACATTTCTCTGGTGACAGTGTTTTATATTTTGTAAAATAGCTGGATGTTAATTTGT TGTTTTCTTGCATATTCTGTGGTGTGTATTCACAGGCCTGTGACAAATTTTGATGAGATACCTTTTCACTTCATTGATTG CATACACAACCATCTCTATTCCAAAGTTAAGGTATTTGCGAACCTCGTATTCTTTTTAATTTCAGACGTCAATGGATACT GTTAAATCTTTCAAGAATTTGATATTGTTGGATCATTAGTAGTGTAGGCACATACTTGAGATATCATGCATAATTAAATG GGGCCATACTTGTAATTTAAATATGATGCCTGATCTTTTTTGAGTTTGCACTTTTAATTTGGGTTTAGGTTGAAGGAATC ACAGGGAATCCTCCATCATCAGACTTATCATTGATTGCAGCCAGAAATGCACCAAATCAAGCAGCATCATCAAACCCGGT ATTGGATTTGATCTGTCGAAGTTGCTAGAATATGTATTTTAGTTTTTCTCAATTGGATTGATGATATAACTTTCCTTACC TCAGTTATATGCGCATGGTGTGGATCAACTCAAGGGCTGTGATAAATTGGTTTTTGACTATCTGCAGCAGCACTCGGACA CGTAAGTTATAAATTTGAAAATTTTACATTTCTTGTATTTTTTGCATTTAATCAAATGGTGCGGTTAATTAAGATTGATT AAATTCTCATCCCACGTACATGCATGTGATATGATGATTTTGAAATGCAGGTCAGATGAAAGTGGAATACATGTTGATGA ACTATCTCTACAGCTTAGACTTCCATTGGATAAGATCAGGTATTGTCATCTCTGCCTATTTGTTTTGTTATTGTATGCAT GCATTTTTTTTGTGGGGCATGTAAATTAAAAGATGTTTATGATGCCAGGTCATCGCTAGAGGTTCTCAAACAGGAAGGTT ATGTATACTCCACCATCGATGAGGATCATCACAAGAAAACCTGAATTTTTGATTCATTTAGATGAATATATGTGAAGATC GATATGGAGAACCAAGACATCATGAACCATTAATTGATGGTATTGGTTTTAGCCTATTTTGATGTGTATGGTTTTGATGA GGATGTAGATATGCTTTTTGGTTTAATTTATTTTATGCTAAAAAACTAATCAGTCACTAGTGTTGATCGATGTAATCTCT GAACCCCCCCTGTTTAAGCATTTAATTTATTTCTACAATCAATTGGAATACAATTCTATTATTTTCTGAC
CDS sequence (LotjaGi1g1v0393200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTATCGTCCTCCACCAACTTCGACGCTAACTCAGCCTTCTCCGGCGGCGGATTCATGACCACCGACTCCTCACACCA CTCCGACTCATCCCCAGCACCCCTCAAAAGCCGTGACACTCAGGGTTTGGTTCCAGTCACAGTGAGGCAGATAAGTGAGG CTTCTCACTCTGGTGATGACAAGTCCAATTTCGTAATCAACGGTGTCGGTCTCACCAATGTAACCTTGGTTGGAATGGTG TTTGAGAAAGTTGAGAAAAACACTGAAGTTAACTTTGTTTTAGATGATGGAACAGGAAGAATCAAATGTAGGAGATGGGT GAATGAAACTTATGATACGAAGGAAATGGATCAAATACAGGACGGTATGTATGTTCGCCTTTATGGCCATTTGAAGAGCT TTCAAGGTGTAAGGCAACTCGTTGCCTTCTCTGTGAGGCCTGTGACAAATTTTGATGAGATACCTTTTCACTTCATTGAT TGCATACACAACCATCTCTATTCCAAAGTTAAGGTTGAAGGAATCACAGGGAATCCTCCATCATCAGACTTATCATTGAT TGCAGCCAGAAATGCACCAAATCAAGCAGCATCATCAAACCCGTTATATGCGCATGGTGTGGATCAACTCAAGGGCTGTG ATAAATTGGTTTTTGACTATCTGCAGCAGCACTCGGACACGTCAGATGAAAGTGGAATACATGTTGATGAACTATCTCTA CAGCTTAGACTTCCATTGGATAAGATCAGGTCATCGCTAGAGGTTCTCAAACAGGAAGGTTATGTATACTCCACCATCGA TGAGGATCATCACAAGAAAACCTGA
Protein sequence (LotjaGi1g1v0393200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLSSSTNFDANSAFSGGGFMTTDSSHHSDSSPAPLKSRDTQGLVPVTVRQISEASHSGDDKSNFVINGVGLTNVTLVGMV FEKVEKNTEVNFVLDDGTGRIKCRRWVNETYDTKEMDQIQDGMYVRLYGHLKSFQGVRQLVAFSVRPVTNFDEIPFHFID CIHNHLYSKVKVEGITGNPPSSDLSLIAARNAPNQAASSNPLYAHGVDQLKGCDKLVFDYLQQHSDTSDESGIHVDELSL QLRLPLDKIRSSLEVLKQEGYVYSTIDEDHHKKT
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 3 | 274 | 272 | 6.8E-69 | ||
| PANTHER | 5 | 274 | 270 | 4.3E-121 | ||
| PANTHER | 5 | 274 | 270 | 4.3E-121 | – | |
| MobiDBLite | 19 | 42 | 24 | - | – | |
| Gene3D | 36 | 169 | 134 | 1.2E-44 | – | |
| SUPERFAMILY | 43 | 167 | 125 | 6.43E-36 | ||
| CDD | 73 | 166 | 94 | 1.1666E-40 | – | |
| Pfam | 74 | 146 | 73 | 9.4E-10 | ||
| Pfam | 197 | 269 | 73 | 4.3E-12 | ||
| Gene3D | 206 | 274 | 69 | 8.2E-14 | ||
| SUPERFAMILY | 208 | 273 | 66 | 2.14E-11 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | DNA replication | The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA. | ||
| Biological process | DNA repair | The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway. | ||
| Biological process | DNA recombination | Any process in which a new genotype is formed by reassortment of genes resulting in gene combinations different from those that were present in the parents. In eukaryotes genetic recombination can occur by chromosome assortment, intrachromosomal recombination, or nonreciprocal interchromosomal recombination. Interchromosomal recombination occurs by crossing over. In bacteria it may occur by genetic transformation, conjugation, transduction, or F-duction. |
Expression pattern of LotjaGi1g1v0393200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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