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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0393500 |
| Transcript ID | LotjaGi1g1v0393500.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | COP9 signalosome complex subunit 5; TAIR: AT1G71230.1 COP9-signalosome 5B; Swiss-Prot: sp|Q9FVU9|CSN5A_ARATH COP9 signalosome complex subunit 5a; TrEMBL-Plants: tr|G7JCC9|G7JCC9_MEDTR COP9 signalosome complex subunit 5; Found in the gene: LotjaGi1g1v0393500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:87802062..87807462) extracted from Lotus japonicus Gifu genome v1.2.
AAAAAAAAAAACAATGAAAAACAAGTGGAAAATTGCCCCTTTAATGAGAACACTAACAAATCAGGTTTCTCAAAAAAATT ATATATATAGAAAAAATCTTTTCAATATGAAATTAATTTCACTTTTCCATTCCTCTTCTTGAACCCTCACTCTCACTCTC TATTGATCATTCATATTCTTCCACCTTCGTACTCCTCAGTCTCTGGGGAACAGAAAAAGAAAGCAAACCGCACCAGAGAG CTTCAGAAGAATCATCAATGGAGGTTTCATCATCGTCATCATCTGCAATCGCACAACAAACATGGGAGCTCGAGAACAAC ATAATCCCGATGGACACTCCTTCAGACGATTCCATCTTCTACTACGACGAAGCTGGCCAGAACGAGTTCCAGCGTGAGAA GCCATGGGCAAACGACCCTCACTACTTCAAGCGCGTCAAGATCTCCGCACTCGCGCTTCTCAAGATGGTTGTTCACGCGC GCTCCGGCGGCACCATCGAAGTCATGGGCCTCATGCAAGGAAAAACCGACGCCGATTCGATCATCGTCATGGATGCTTTC GCTTTGCCCGTTGAAGGCACTGAAACCCGTGTCAATGCCCAAGCTGATGCGTATGAATACATGGTTGATTATTCTCAGAC CAATAAGCAGGTTCGTTAAACCCTAACCCTAACCCTAATTTTAATCCCATTTTGATTTTGGCCCTAATTGTTACCTGATT AGGTGAATTAGGTTTACAAATCAATCGGATTTTTAAACTGGTTCCTTAAACCCTAACCCTAACCCTAACCTAAATCCCAT TTTAGTTTTTGCTCTAATTGTTACTTGATTAGGTGAATTAGGTTTTAAAATCTGATTTTGTGATGTGTTTTCAGGCTGGG AGGTTAGAAAACGTTGTGGGGTGGTACCATTCTCATCCGGGTTACGGTTGTTGGCTTTCGGGTATCGATGTTTCTACGCA GATGCTGAATCAGCAGTTTCAGGAGCCTTTTCTTGCTGTTGTGATTGATCCTACTAGGACTGTTTCTGCTGGGAAGGTTG AGATTGGGGCTTTCAGGACTTACCCTGAAGGTTATAAGCCTCCAGATGAGCCTATTTCTGAGTATCAGACCATTCCTTTG AATAAAATTGAAGACTTTGGTGTCCATTGTAAACAGGTTATTCTTCTCTCTTTGCCTTTTAATCTAACCCCCATTTTCCC CTATTTTTTTGTTTAAGCTTCATTTGTGTGGTTTTGCAGTATTATTCCTTGGATATCACTTACTTCAAGTCCTCCCTTGA TTCACACCTGTTGGATTTGCTGTGGAACAAATATTGGGTGAATACACTGTCATCTTCTCCTCTGTTGGGTAATGGAGATT ACGTTGCTGGACAAATCTCGGATTTAGGTACGTACTCCCCTTCAGTGGCTTCCTTTTACTGCAATGATAGATATGCTTTT GAATTTGGTTGTGCAGTTTGTTGTGAACATGAAAGTAGACTAGCATGGTTTCATATTTATCTTATAAATAGTCCTATCGA TGGTATATTTTAAAACTATGAGTAACACAATTGGATAATTCCTATTGCAGCTGAAAAGTTAGAGCAAGCAGAGAATCAGT TGGCGCACTCACGCTTTGGGTCACTGATAGCACCCACACCTAGAAAGAAAGAAGTGAGTAACTCTTGCTCTGAAAATAAT TTCTGCCCTTTTTATTTAAGGGTTTCATTGTGTTTGTTTGAAATCAAGGGCAGCAATAACTTTTCGATGATCAAAACCTT ACTGTGTGAAGTTACGTAAATAGATATACATCTATTGAAAACTTGAGCTTATTTCTTAAAGTCAGCCGTGAATATCCCTG ATCAGTATACCACATTGTGCTCTCGTGTTTGTGATTTGCACCTCTTATTTTGCTGTTTTGTGTTATGTTATGGGAGTGTG AATAAAGAAGCTTTATTGCATCACACTACCTCAAGATTTTGTAACACATTTTCCAATGTACACCAACTGTAATAGTCAAC TCTTGAACTGTCAAATGGAAAAAAATATATAAAGCCCAGAGGAGTGTTTGCCCCCGGTGATATTGTTTAACATGTGTTGC CCTGCATGATGGATATTTATACTTGGGAATTTCTGGCCAGCAAAGGTCCAGGGTCAAGGACATATCTCCCTTTAAATAAC TTATGTTCACAATGGAGAGAGAATATCTAGAAACTGTTGGAATGAAACTTAGAGCCAAATACTTGATGAATTAACAAGAA TCACTGCATAGAGTAATTAATAGCTTTATGTATTCCAAATTGAACATTTTCTTCCAACCTCCTGAATATATTGATTGCCC TTCTGATTGATATGTATTCTTGAATATTATCTTTGGGGGGTTCATTGTAGTTAATTGAGTTTTTTTAGTTGTACTAAGAA AAAAGAGCATAATTATATGTGATAGGAATTAAAATCTATGAACTTTGACTTGGTGTTCTGTGCACCTGAATTGCTTAACT TTATTCATCTATACTTAACTGGCATAGCTTTCCTAACTCAGATACCAATAATTTATAACATCCAGAGTCATGTTAATATG TTGGATTTGCCACGGAGGAACATTAGACAAGTGAAGAATTATAATCATTAATCAGAAAATTAACTTTTGAGATTTTAACA AGTTCATTGTTTATTATATTTGTGGGTGTGTTTTATCACAATTTTAACTATCAAATCAATGGTTATCCCTGCACTTCACT TTCTAATAGTCAGATTCATTTATTTTTTGGAAAATGGATTTAGAAGTGATGTACATATAACTAGTTGCTGTCATGAGTGC CCGGACTAGATGTTGGACATTGGCCAATTTAGGTGTTAAAGTTGTTTGTGACTGTCATTCATCAATGAATCGATCCTAAA AGATTAGGACCTTAATGTTCGACGTGTATTGTTGGTTGAGCTTATTGGACTGCTACTGCTTCTGCAGTTTTTCTTTCTTT CTTCTTTTCTTTTTTTCTTTCTTTTCATTGTGTTTTTGTTTGCAAGAGAATTTTTCATAGTCAAACCCCCATTATACTGT TCATTTTAATATGGAAGCATCGCAATCTGTTTCAATTCTAATCTTCATCTATCCCTTTACATATGTCATTCTTCGCAAAA TAAATTATCCTTGGCAATACTCTTTTTCTATTTGGCAGAGTCCTGATGATCAAATGTATGGATCATCGGAGATCAGATCA CCCTGTTCTATTTCCATCCCCATTTTCTGTTTCTATTTCTTGTTTCCAGTTGTAATTAATTAATGTCTCCTTGTTTTCAC TTTGTTTTGTTTCCTATACTAAACTTTGCAAACAGAAAACAAATTGAAAACAAGGTAGAACTTTTGGAGTTAAATCTGAA AATAGAATTGTTTTCTGATACCAACAAGCCCCAATTGTGCCTCCTACCTGATTTGTTTGCTGGAGACTTAATTTGTGATG GTTTAATTTTTAATATTGGTTCCCCATGGCATATTACTTACTTGGTCAGCTTTTCTATTACAAGATTTACAACCACCCTC TATTATTGTGCATACTGATGCATTTATCCCTGACCATTATATCATTTCATATTATTTTCTTTTGGAAAAGTTTCATCCAA AGAAAGATGCTGATGTGTATACTCGCATACCGCAAAGACGAAATAACAGAAATTTAAGTATGATTAGTTTATGGCTATGC TCATGTTTTTGTTTGGCTACATATCACTTCCACATTTTCCACAATGGACAAGGTATAAATAAGAGATGTTTCTTAATCTT GGGAAATCTCTTGCAATGTGCTTGAAGTTATGGTGAATCTTGGGAAATCTCTTGCAATTGCATACTAGATCCCTTTACCC ACTTCCTATTCTGTCAATATCTTCTTTGTGAGCCATCACCCATGAATGAATACCACTCAATATTGATGCTAACATTCACT TCCCAGATCCCAATCCCCCTCAATTATCACTCCATTTGCATTCCTGATGGTGACATTTCAATGATTTGCAGGAAGAATCT CCACTTGCTAAGATTACTCGTGACAGTGCGAAAATAACTGTGGAGCAAGTGCATGGTCTAATGTCGCAGGTGACTGCAAA CCCCCTTTCCCCTTTAATAGCATAAGAAGTTGGTTATGAGATTTATTATTCTGTTAGAAGTCTGTTACTCTAGTTGTTAT TCCCTGGCTCTTTTTGGTATGAAAATTCATCAATAGACAACTGAAACATTATGGTGAATTTCTTGTTTGTATGTAGGTAA TCAAGGATATTCTGTTCAACTCAGTTCACCAAGCAAACAAGTCTCGCACAGAAACAACTTCTGACCCTGAACCAATGATT GAAAGCTGATTCTAACATCTACCAGACCTGCATTTATATACACTTCATTTTAATGCCCTCATTTTAGATTTTGCGTTTTT TCCTTTTTGGCGTGTACATCCTTGTTTTATTTCCAAAAGGAACATGCGCGTCTTTCATCATTTGAATCGGGTTCTCTATA GTTAGTTAATGATGAAACTGTTGCAGTTATTATCTTGCCGTGCATTTTTTATATTTTACTCGTGATGAAACTATTTAAGT TAAAAAGAATTTTCTGTTATGGAAAGTTAAAGAAAAATCACTTCTCTATTACTCACTGTGAACAAAAAAATTGTGCCTTA ACCGAGGGTGTCATTGTTTTATGTATTCGGATGCCTCAAAGGGCTACCAAATAGGCTTTAATCTGTCATTAGATTTCTGT AAAATTTGATACCAGTGAATGACAAATTCTTCAAACTTACATTTCTGTATAACTTTATAATGAATGGAAAATGTTGACCA GAGAGAAAAGGCTTACAAAATTTTCTTGAAAGCTTTTGCTTTTTGTTGCAATTCTGGGTTAATTTTCCCCACAGTTTATA CAGTGGTTGTTTGATCAACATGAGTGATGCTAGCTAGTAACATTCGTATTTTGTCGAGCTAGCTTTTCTGGTGATATTTT TCCATACAAAAAAAGACTTGGAACTTAAAGAAACATTCCTCACTGAACGAATCACTCATTGCTATAATATGTTAAGAATT TAAGATGATAAAAGTCGATTTGATATTTTAAGAACCCAAAGCACTTGCTCAATGGCTATGGCTACCAAGTACCAGCACAA GATTACAAGCCTACAATACAAATAGGATAGCAAGTATGTGGTCACAAAAACGTTGAAAGAATAGATGGTGTACAAGATAA ATGTATAACATTCTTTTTTTTAGGGAAAACATTCTTTGATATATTGTTTCTTCTTAAAATCCTCTGTTTTTCTAATAAAC TTTAATGTTGATCCCACTCAACGATAGCGGAACAAGCAAGAAATGTGTCCTAATAAATCTTTTTAAAGACTATAAACATT TATGTCACTGAAATTTTTCAAAGGACATAAAACTAGTAACA
CDS sequence (LotjaGi1g1v0393500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAGGTTTCATCATCGTCATCATCTGCAATCGCACAACAAACATGGGAGCTCGAGAACAACATAATCCCGATGGACAC TCCTTCAGACGATTCCATCTTCTACTACGACGAAGCTGGCCAGAACGAGTTCCAGCGTGAGAAGCCATGGGCAAACGACC CTCACTACTTCAAGCGCGTCAAGATCTCCGCACTCGCGCTTCTCAAGATGGTTGTTCACGCGCGCTCCGGCGGCACCATC GAAGTCATGGGCCTCATGCAAGGAAAAACCGACGCCGATTCGATCATCGTCATGGATGCTTTCGCTTTGCCCGTTGAAGG CACTGAAACCCGTGTCAATGCCCAAGCTGATGCGTATGAATACATGGTTGATTATTCTCAGACCAATAAGCAGGCTGGGA GGTTAGAAAACGTTGTGGGGTGGTACCATTCTCATCCGGGTTACGGTTGTTGGCTTTCGGGTATCGATGTTTCTACGCAG ATGCTGAATCAGCAGTTTCAGGAGCCTTTTCTTGCTGTTGTGATTGATCCTACTAGGACTGTTTCTGCTGGGAAGGTTGA GATTGGGGCTTTCAGGACTTACCCTGAAGGTTATAAGCCTCCAGATGAGCCTATTTCTGAGTATCAGACCATTCCTTTGA ATAAAATTGAAGACTTTGGTGTCCATTGTAAACAGTATTATTCCTTGGATATCACTTACTTCAAGTCCTCCCTTGATTCA CACCTGTTGGATTTGCTGTGGAACAAATATTGGGTGAATACACTGTCATCTTCTCCTCTGTTGGGTAATGGAGATTACGT TGCTGGACAAATCTCGGATTTAGCTGAAAAGTTAGAGCAAGCAGAGAATCAGTTGGCGCACTCACGCTTTGGGTCACTGA TAGCACCCACACCTAGAAAGAAAGAAGAAGAATCTCCACTTGCTAAGATTACTCGTGACAGTGCGAAAATAACTGTGGAG CAAGTGCATGGTCTAATGTCGCAGGTAATCAAGGATATTCTGTTCAACTCAGTTCACCAAGCAAACAAGTCTCGCACAGA AACAACTTCTGACCCTGAACCAATGATTGAAAGCTGA
Protein sequence (LotjaGi1g1v0393500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MEVSSSSSSAIAQQTWELENNIIPMDTPSDDSIFYYDEAGQNEFQREKPWANDPHYFKRVKISALALLKMVVHARSGGTI EVMGLMQGKTDADSIIVMDAFALPVEGTETRVNAQADAYEYMVDYSQTNKQAGRLENVVGWYHSHPGYGCWLSGIDVSTQ MLNQQFQEPFLAVVIDPTRTVSAGKVEIGAFRTYPEGYKPPDEPISEYQTIPLNKIEDFGVHCKQYYSLDITYFKSSLDS HLLDLLWNKYWVNTLSSSPLLGNGDYVAGQISDLAEKLEQAENQLAHSRFGSLIAPTPRKKEEESPLAKITRDSAKITVE QVHGLMSQVIKDILFNSVHQANKSRTETTSDPEPMIES
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 4 | 262 | 259 | 9.8E-116 | – | |
| PANTHER | 5 | 346 | 342 | 7.1E-179 | – | |
| PANTHER | 5 | 346 | 342 | 7.1E-179 | ||
| CDD | 49 | 321 | 273 | 7.29777E-157 | – | |
| Pfam | 57 | 168 | 112 | 2.0E-34 | ||
| SUPERFAMILY | 59 | 196 | 138 | 9.68E-14 | – | |
| SMART | 59 | 196 | 138 | 4.6E-47 | ||
| ProSiteProfiles | 60 | 197 | 138 | 34.275 | ||
| Pfam | 256 | 336 | 81 | 2.9E-25 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Metalloendopeptidase activity | Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions. | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Cellular component | COP9 signalosome | A protein complex that catalyzes the deneddylation of proteins, including the cullin component of SCF ubiquitin E3 ligase; deneddylation increases the activity of cullin family ubiquitin ligases. The signalosome is involved in many regulatory process, including some which control development, in many species; also regulates photomorphogenesis in plants; in many species its subunits are highly similar to those of the proteasome. |
Expression pattern of LotjaGi1g1v0393500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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