Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi1g1v0393600.3

Overview

Field Value
Gene ID LotjaGi1g1v0393600
Transcript ID LotjaGi1g1v0393600.3
Related isoforms 6
Lotus japonicus genome version Gifu v1.2
Description Plasma membrane ATPase; TAIR: AT2G24520.1 plasma membrane H+-ATPase; Swiss-Prot: sp|Q03194|PMA4_NICPL Plasma membrane ATPase 4; TrEMBL-Plants: tr|V7AUY2|V7AUY2_PHAVU Plasma membrane ATPase; Found in the gene: LotjaGi1g1v0393600
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:87816207..87821324) extracted from Lotus japonicus Gifu genome v1.2.

GTTACTTATTCGACTAATTAAAAATTAAATTAGCTGTCTGAAATATTTTTCCAATCCTCTGGGTTTATTACTTAATCAAC CGATAATATTTCATTCCTAGCTTCTATAACTTTTTCCTTTCAATTGGTTTCCATTTTGCATTGAAACATTTGTCCCTGTT CCCAGGAACGGATTCCAGTGGAGGAAGTGTTTGAGCAGCTGAAATGTTCCAAAGAAGGTCTATCATCCGACGAAGGAGCC AACCGGCTTCAAGTTTTTGGACCAAACAAATTGGAAGAGAAAAGGGTATTCTTTTTCCCCCTGCAATTTCCACCCCTGTT AGTTTATTTCATGTCATTGAATTGCATTGCATTATTAGTTTAATGGGTTCCTTGGTTTCATGAACAGGAGAGCAAACTTT TGAAGTTCTTGGGTTTTATGTGGAACCCCTTATCATGGGTTATGGAAGCTGCAGCTATAATGGCTATTGCTTTGGCTAAT GGTGGAGGAAGGCCACCGGATTGGCAAGATTTCGTGGGTATCATTACTCTTTTGATCATTAACTCCACAATCAGTTTCAT TGAGGAAAACAATGCTGGAAATGCTGCTGCTGCACTCATGGCTGGGTTAGCTCCCAAAACCAAGGTATAATATAATACTC CTACAGTCCTACTTCAATTTTTCATGTTTGGTTTAGCGTTGAGAGAAATTATTTTAGATAGAACTGATCTTGACGAATTG ATTATAGTAAAAGTGAGTTGAAAGTGATAGTGATTTTAAAAGCTAAAAAAGTGATTCTTGTGATTTTAAAGCTAAAATCA CTTTCATGTTAACGCAAAAGCTTGGTCTATTTGCTTTGGCCTCAACGTGATGTTTTCAGCTTGAAGTGCCTCTAAGAATT TCATCCAAACATGTTTTGATGATGAAGAACCACATTAGAGAGAATTAAAAGGCTTTTTATTTTATGGATGAACAACGTGA AACCAAACATATACATATATGTTGTTAATGTTTCTTCAACTTTTTCCTGGCATGAAATTGTAGGTTCTGAGAGATGGGCG CTGGACTGAACAAGATGCTGCGATTTTGGTCCCGGGAGACATAATCAGCATCAAGTTAGGAGATATCATTCCTGCTGATG CCCGTCTTCTGGAGGGTGATGCTTTGAGTGTTGATCAGTCTGCTTTAACCGGAGAGTCTCTACCAGCGACAAAGCATCCC TCTGATGAGGTGTTTTCAGGTTCAACTGTGAAGAAAGGTGAGATAGAAGCTGTCGTGATTGCTACTGGGGTGCACACCTT CTTTGGTAAAGCGGCTCATCTGGTCGATAGCACCAACCAAGTTGGGCACTTTCAGAAAGTCCTCACAGCAATTGGTAATT TCTGCATTTGCTCCATTGCTGTTGGGATAGTCATTGAGCTCATAGTCATGTACCCAATACAACATCGCAAGTACAGAGAT GGGATTGACAATCTGCTGGTTCTATTGATTGGAGGAATTCCGATTGCCATGCCTACTGTTTTGTCTGTTACCATGGCTAT TGGCTCTCACAGGCTTTCCCAGCAAGGTGCAATAACAAAAAGAATGACAGCTATTGAGGAAATGGCAGGGATGGATGTCC TCTGCAGTGACAAAACTGGGACTCTGACCCTGAATAAGCTGAGTGTTGATAGAAACTTGATTGAGGTTTTTACCAAGGGT ATTGAGAAGGAGCATGTTATCCTTCTTGCAGCAAGAGCTTCTAGGACTGAGAATCAGGATGCCATAGATGCTGCAATTGT GGGGATGCTTGCTGATCCAAAGGAGGTAAATTAAATATGCCAAAATGATCTCTATTTGGGACAAAAAAATATGAATAGTT TGGAATGAAGATAAAAGGTTTAACTTTTAATGTGAATTGGCCAGGCACGAGCTGGTGTCAGGGAGGTCCATTTTCTCCCA TTCAATCCTGTGGACAAGAGGACCGCTCTAACCTACATTGATTCTGACGGAAGTTGGCATCGAGCTAGCAAAGGTGCTCC TGAGCAGGTAAATATTATGTGTTTTTCTAGCACCATATGGTTATGTACTGATGTTGGTGTGGTTGACTAATCCATGTTTT TCTCCTTACTTAGATATTGAACCTATGCAACTGCAAAGAGGATGTCAGAAAAAGGGCTCATAGTACTATTGACAAGTTTG CTGAGCGTGGACTCCGTTCTTTAGGTGTTGCTAGACAGGTTTGAAACACTGATATTTAACATTTGTAGTTTCCAACTTGT ATAAATACTGAACACCCTTCCTTAATTGCTGTTTGTGTGGTTTGTCTATAACAGGTAGTACCTGAGAAATCAAAAGATGC TCCTGGTGCACCATGGCAATTTGTTGGTCTGCTGCCCTTGTTTGATCCTCCTAGGCACGATAGTGCGGAAACCATCACAA GAGCTCTGAACCTTGGTGTGAATGTTAAGATGATTACTGGTAAGTTTCAAGTTCAACTTTGTTCTAATTCTAGTTCATAT TTATACCATTAATGAAATCAAACATATAGCTTACAAAACTTTTGTGGGTTTCTAATTCTCCAGGGGATCAGCTTGCCATT GCCAAGGAAACTGGTCGAAGGCTTGGGATGGGAACAAACATGTACCCATCTTCTTCATTGCTTGGCCAAAGTAAGGATGC TGCTGTTTCAGCTCTTCCAGTTGATGAGTTGATTGAGAAGGCTGATGGGTTTGCTGGAGTATTCCCTGGTAGGTCCTTGA TTATAATAATGATGGCAGCATCATCCACTTTCTGCTTTCAATCATTTCAAACATTTTTCATCTGTTCATGGCTTCTTTGC GAGGATATGGAATGGGACTGCAACTTTTGTAAACAAATTGAATGAAGTTTTGAATTGCCCAATCCTGCTAACAATTTAAT CTTTTTTTCTCTTTCTATGACATTGCAGAACACAAATATGAAATCGTTAAGAGGCTGCAAGACAGGAAGCACATATGTGG AATGACAGGTGATGGTGTCAACGATGCCCCTGCATTAAAGAGAGCAGATATTGGAATTGCTGTTGCAGACGCTACAGACG CTGCTAGAAGTGCTTCTGACATTGTCCTCACTGAACCTGGGCTGAGTGTCATTATTAGTGCAGTGCTCACCAGCAGGGCG ATTTTCCAAAGGATGAAAAACTACACGGTTAGTTTTCTTTCACACATAATTTAATTCCTTGATTTTATTTTCATATCTTG CAGCCTAATACCTGAAATTTCGATTGTTGATTATGGCAGATCTATGCTGTGTCAATCACCATTCGTATAGTGGTAAGTGC AGAAAAGAGCTTAACTCAGAAAACACAATTTTTATACATGCTAGTCTACATTGTTCATATAACTTATGCCATATGTTTTC TTCATGCTGGCAGTTCGGTTTCATGTTTATTGCATTGATTTGGAAGTTTGATTTTGCACCCTTCATGGTATTGATAATTG CCATACTAAACGATGGTAAGATAATACTTGCCTGACCTTCCTGCTGTTTGCTTTGACTATTCTGTGAAATTTGATTTAAT TTTCTTCACCCCTAATACCAATAGGTACCATTATGACAATATCCAAGGATCGAGTGAAACCATCTCCAATGCCCGATAGC TGGAAGCTGAAGGAGATATTTGCAACCGGTGTTGTGCTAGGTAGTTACATGGCATTGATGACAGTAGTATTTTTCTGGCT CATCAAGGACACCGATTTCTTCCCGGTAATAATTTATATTTCGGGTTTCTCTCAATATTATCACTTGCTAGAGAAAATGG TAAGAGTTAAGAGTGCCGCAACTCATGCTATTGCAATTGCAGGACAAATTTGGTGTCAGGTCCATCAGAAATAGTCCTGG AGAAATGATGGCAGCCCTATACCTCCAAGTCAGTATTATTAGCCAGGCCCTTATTTTTGTCACCAGGTCCCGTAGCTGGT CCTTTGTTGAAAGACCTGGTCTTCTCCTACTTGGTGCTTTCATGATTGCTCAGCTGGTAATCTTAAACCTTTCTCCGCAA ACCTAGTACATAAAGTTTTCTGTATCTTGTGATTTTATGATTGAAGCAATGCAATTTTGTTTGTACTCTTGTCAAGAATT CAGATCAATGAATGATCATGCATTAGGAAGCAATAGTTAGTAAAATGAAATGAAGCCAATACTTTTGTTGCAATAGTTAG TGGAATAATACTTCAGCACATGAGAAAATTAGAATTTAGGGTGCTGCTCTATCAGCTAGTTATGCAAATGATTGATTAAT CAAAAGCTTTTGGCTTTCTTCTTTAGCAATAATAATCTGTTTCATGATTGACAGGTAGCAACTTTTCTAGCTGTATATGC TAATTGGAGCTTCGCAAGAATTAATGGAATGGGATGGGGTTGGGCTGGTGTAATATGGTTGTACACTATAGTAACATACA TCCCTCTTGATTTACTCAAATTCGCAATCCGCTATGCTCTGAGTGGGAAAGCTTGGGATAATCTTTTAGAGAACAAGGTA ATTTCTTCTTCTTTATCACTATAGTATTGCTAAATGCATTTTTTCTTTATCTTAATCCAGAGACTTCAAGATTCAAAACC TGTTTATGCTTTCTGATGACAGACTGCCTTCACTACAAAGAAAGACTACGGAAAGGAAGAAAGAGAAGCACAGTGGGCAG CTGCTCAGAGGACTCTTCATGGTCTTCAGCCACCGGAAACATCCAACGTCTTCAATGAAAAGAATAGCTACAGGGAGCTT TCAGAGATTGCTGAGCAAGCCAAGAGACGCGCTGAGGTTGCAAGGTAAGCCATTGGCTTCACTTGTACCATATGACATCA AGTTTGTGTCTAAAAGCACTAGCATTTTGGATCAGATTCTGTTTCTTCATCATCAATTATGAAATTGAAAAGCAACTCAC AGAAGCTTCTCCTTATAATTGATTTGGACATTAGAATCAATTGTAGAATGATTTCCAAACATGCATTTCATGCAGTGCTA TTTATAGGTAACAAATTATATATATGATAGTCTCTTAGAGCTTTTTGAAATTGGTTCACAGGCTTAGGGAGCTTCATACT CTAAAGGGACATGTTGAGTCAGTGGTGAAGCTGAAGGGACTTGACATTGATACCATCCAGCAACATTACACGGTTTGA 

CDS sequence (LotjaGi1g1v0393600.3) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTGGAACCCCTTATCATGGGTTATGGAAGCTGCAGCTATAATGGCTATTGCTTTGGCTAATGGTGGAGGAAGGCCACC GGATTGGCAAGATTTCGTGGGTATCATTACTCTTTTGATCATTAACTCCACAATCAGTTTCATTGAGGAAAACAATGCTG GAAATGCTGCTGCTGCACTCATGGCTGGGTTAGCTCCCAAAACCAAGGTTCTGAGAGATGGGCGCTGGACTGAACAAGAT GCTGCGATTTTGGTCCCGGGAGACATAATCAGCATCAAGTTAGGAGATATCATTCCTGCTGATGCCCGTCTTCTGGAGGG TGATGCTTTGAGTGTTGATCAGTCTGCTTTAACCGGAGAGTCTCTACCAGCGACAAAGCATCCCTCTGATGAGGTGTTTT CAGGTTCAACTGTGAAGAAAGGTGAGATAGAAGCTGTCGTGATTGCTACTGGGGTGCACACCTTCTTTGGTAAAGCGGCT CATCTGGTCGATAGCACCAACCAAGTTGGGCACTTTCAGAAAGTCCTCACAGCAATTGGTAATTTCTGCATTTGCTCCAT TGCTGTTGGGATAGTCATTGAGCTCATAGTCATGTACCCAATACAACATCGCAAGTACAGAGATGGGATTGACAATCTGC TGGTTCTATTGATTGGAGGAATTCCGATTGCCATGCCTACTGTTTTGTCTGTTACCATGGCTATTGGCTCTCACAGGCTT TCCCAGCAAGGTGCAATAACAAAAAGAATGACAGCTATTGAGGAAATGGCAGGGATGGATGTCCTCTGCAGTGACAAAAC TGGGACTCTGACCCTGAATAAGCTGAGTGTTGATAGAAACTTGATTGAGGTTTTTACCAAGGGTATTGAGAAGGAGCATG TTATCCTTCTTGCAGCAAGAGCTTCTAGGACTGAGAATCAGGATGCCATAGATGCTGCAATTGTGGGGATGCTTGCTGAT CCAAAGGAGGCACGAGCTGGTGTCAGGGAGGTCCATTTTCTCCCATTCAATCCTGTGGACAAGAGGACCGCTCTAACCTA CATTGATTCTGACGGAAGTTGGCATCGAGCTAGCAAAGGTGCTCCTGAGCAGATATTGAACCTATGCAACTGCAAAGAGG ATGTCAGAAAAAGGGCTCATAGTACTATTGACAAGTTTGCTGAGCGTGGACTCCGTTCTTTAGGTGTTGCTAGACAGGTA GTACCTGAGAAATCAAAAGATGCTCCTGGTGCACCATGGCAATTTGTTGGTCTGCTGCCCTTGTTTGATCCTCCTAGGCA CGATAGTGCGGAAACCATCACAAGAGCTCTGAACCTTGGTGTGAATGTTAAGATGATTACTGGGGATCAGCTTGCCATTG CCAAGGAAACTGGTCGAAGGCTTGGGATGGGAACAAACATGTACCCATCTTCTTCATTGCTTGGCCAAAGTAAGGATGCT GCTGTTTCAGCTCTTCCAGTTGATGAGTTGATTGAGAAGGCTGATGGGTTTGCTGGAGTATTCCCTGAACACAAATATGA AATCGTTAAGAGGCTGCAAGACAGGAAGCACATATGTGGAATGACAGGTGATGGTGTCAACGATGCCCCTGCATTAAAGA GAGCAGATATTGGAATTGCTGTTGCAGACGCTACAGACGCTGCTAGAAGTGCTTCTGACATTGTCCTCACTGAACCTGGG CTGAGTGTCATTATTAGTGCAGTGCTCACCAGCAGGGCGATTTTCCAAAGGATGAAAAACTACACGATCTATGCTGTGTC AATCACCATTCGTATAGTGTTCGGTTTCATGTTTATTGCATTGATTTGGAAGTTTGATTTTGCACCCTTCATGGTATTGA TAATTGCCATACTAAACGATGGTACCATTATGACAATATCCAAGGATCGAGTGAAACCATCTCCAATGCCCGATAGCTGG AAGCTGAAGGAGATATTTGCAACCGGTGTTGTGCTAGGTAGTTACATGGCATTGATGACAGTAGTATTTTTCTGGCTCAT CAAGGACACCGATTTCTTCCCGGACAAATTTGGTGTCAGGTCCATCAGAAATAGTCCTGGAGAAATGATGGCAGCCCTAT ACCTCCAAGTCAGTATTATTAGCCAGGCCCTTATTTTTGTCACCAGGTCCCGTAGCTGGTCCTTTGTTGAAAGACCTGGT CTTCTCCTACTTGGTGCTTTCATGATTGCTCAGCTGGTAGCAACTTTTCTAGCTGTATATGCTAATTGGAGCTTCGCAAG AATTAATGGAATGGGATGGGGTTGGGCTGGTGTAATATGGTTGTACACTATAGTAACATACATCCCTCTTGATTTACTCA AATTCGCAATCCGCTATGCTCTGAGTGGGAAAGCTTGGGATAATCTTTTAGAGAACAAGACTGCCTTCACTACAAAGAAA GACTACGGAAAGGAAGAAAGAGAAGCACAGTGGGCAGCTGCTCAGAGGACTCTTCATGGTCTTCAGCCACCGGAAACATC CAACGTCTTCAATGAAAAGAATAGCTACAGGGAGCTTTCAGAGATTGCTGAGCAAGCCAAGAGACGCGCTGAGGTTGCAA GGCTTAGGGAGCTTCATACTCTAAAGGGACATGTTGAGTCAGTGGTGAAGCTGAAGGGACTTGACATTGATACCATCCAG CAACATTACACGGTTTGA 

Protein sequence (LotjaGi1g1v0393600.3) extracted from Lotus japonicus Gifu v1.2 Proteins.

MWNPLSWVMEAAAIMAIALANGGGRPPDWQDFVGIITLLIINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGRWTEQD AAILVPGDIISIKLGDIIPADARLLEGDALSVDQSALTGESLPATKHPSDEVFSGSTVKKGEIEAVVIATGVHTFFGKAA HLVDSTNQVGHFQKVLTAIGNFCICSIAVGIVIELIVMYPIQHRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRL SQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDRNLIEVFTKGIEKEHVILLAARASRTENQDAIDAAIVGMLAD PKEARAGVREVHFLPFNPVDKRTALTYIDSDGSWHRASKGAPEQILNLCNCKEDVRKRAHSTIDKFAERGLRSLGVARQV VPEKSKDAPGAPWQFVGLLPLFDPPRHDSAETITRALNLGVNVKMITGDQLAIAKETGRRLGMGTNMYPSSSLLGQSKDA AVSALPVDELIEKADGFAGVFPEHKYEIVKRLQDRKHICGMTGDGVNDAPALKRADIGIAVADATDAARSASDIVLTEPG LSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVFGFMFIALIWKFDFAPFMVLIIAILNDGTIMTISKDRVKPSPMPDSW KLKEIFATGVVLGSYMALMTVVFFWLIKDTDFFPDKFGVRSIRNSPGEMMAALYLQVSIISQALIFVTRSRSWSFVERPG LLLLGAFMIAQLVATFLAVYANWSFARINGMGWGWAGVIWLYTIVTYIPLDLLKFAIRYALSGKAWDNLLENKTAFTTKK DYGKEEREAQWAAAQRTLHGLQPPETSNVFNEKNSYRELSEIAEQAKRRAEVARLRELHTLKGHVESVVKLKGLDIDTIQ QHYTV 

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D 1 95 95 1.2E-30
Phobius 1 174 174 -
PANTHER 1 865 865 0.0
PANTHER 1 865 865 0.0
TIGRFAM 1 740 740 0.0
CDD 1 775 775 0.0
SUPERFAMILY 1 781 781 3.01E-71
SignalP_EUK 1 20 20 -
TIGRFAM 35 280 246 2.0E-38
Pfam 65 242 178 4.9E-49
SUPERFAMILY 66 163 98 7.45E-29
PRINTS 113 127 15 7.1E-42
Gene3D 122 278 157 1.5E-15
Phobius 175 201 27 -
TMHMM 176 198 23 -
Phobius 202 212 11 -
TMHMM 213 235 23 -
Phobius 213 235 23 -
Phobius 236 580 345 -
SFLD 245 573 329 0.0
SFLD 245 573 329 0.0
SUPERFAMILY 259 569 311 9.07E-40
Pfam 259 536 278 1.8E-17
PRINTS 263 277 15 7.1E-42
ProSitePatterns 265 271 7 -
Gene3D 279 418 140 2.2E-48
PRINTS 379 397 19 1.0E-59
PRINTS 417 428 12 7.1E-42
Gene3D 419 489 71 1.5E-5
PRINTS 439 449 11 7.1E-42
PRINTS 494 510 17 1.0E-59
TIGRFAM 497 612 116 5.1E-28
Gene3D 505 780 276 1.8E-111
PRINTS 522 538 17 1.0E-59
PRINTS 522 541 20 7.1E-42
PRINTS 545 557 13 7.1E-42
PRINTS 553 578 26 1.0E-59
Phobius 581 601 21 -
TMHMM 581 603 23 -
Phobius 602 606 5 -
Phobius 607 626 20 -
TMHMM 607 624 18 -
Phobius 627 645 19 -
TMHMM 645 667 23 -
Phobius 646 667 22 -
Phobius 668 686 19 -
Phobius 687 708 22 -
TMHMM 690 707 18 -
PRINTS 694 715 22 1.0E-59
Phobius 709 719 11 -
TMHMM 719 741 23 -
Phobius 720 741 22 -
Phobius 742 752 11 -
TMHMM 751 773 23 -
Phobius 753 773 21 -
Phobius 774 885 112 -
Coils 836 856 21 -

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
Molecular function Nucleotide binding Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
Molecular function Proton-exporting ATPase activity, phosphorylative mechanism Enables the transfer of protons from one side of a membrane to the other according to the reaction: ATP + H2O + H+(in) -> ADP + phosphate + H+(out). These transporters use a phosphorylative mechanism, which have a phosphorylated intermediate state during the ion transport cycle.
Cellular component Integral component of membrane The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
Biological process Proton export across plasma membrane The directed movement of hydrogen ions (protons) from inside a cell, across the plasma membrane and into the extracellular region.

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0393600.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…