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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0400000 |
| Transcript ID | LotjaGi1g1v0400000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | La protein like; TAIR: AT4G32720.2 La protein 1; Swiss-Prot: sp|Q93ZV7|LA1_ARATH La protein 1; TrEMBL-Plants: tr|I1K995|I1K995_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0400000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:88736591..88740914) extracted from Lotus japonicus Gifu genome v1.2.
AAAATGCAAGCAAGTATCGAGGTTCAGTTGCAGCATCTTCCCATAAACCCTAGATACTTCTTCATCTTCATCAATGGCGA CGCCGACCACGTTGAACGAAGAAACAACCAAGAAAGTGATACGACAAGTACGAACACGAATCATATTCAACTTGTTCTCT CTATTTCACAACCGTTCATCGATCATCAAATTTTCTCGTTTTTTTTCAGGTGGAGTTCTACTTCAGTGATAGCAACCTTC CCAAGGACAATTTTATGCGGAAAACCGTCTCTGAAAGCGAAGATGGCAGTATCCTTCTTCTTCGTTTTTCGTATTTGCTG TTTGTTTCTCGTGTTACTGTATTTGTTGTGCTTTGTTCAAGTGATTTTGGAATTTTTCATTGTTGGTCTTGACCTGGTTA TACAGTGGTTAGTTTGGCTTTGCTTTGTTCTTTCAACCGAATGCGCCAGCACCTTAATTTGGGTGATGTAAAGGCTGAGG ATGTGACTGAAGATACTGTTAAGGCTGTTGCTCATGTTTTGAGAAATTCTGCTTCACTCAAAGTCTCTGAAGATGGTTAG TTTCCTCTGCTTAACCCTTTTCCTGTTTGTTTTTGTTATTTTTCCGCAGAATTTATGCAGTTTTAATCTATAATAATTGG AGATTATGGGGTTACTGCAATGTTGGCATGGATTTCTTTGCTTAGGGGAGGAGATGGGGATTGATTTCACCTCAATTTTT CTGGTATTTGTGCTTAGTGATTGCACTTAGTGTGTATTAACAGATGTAGAACAATAGAACATACAATTTGTTTGTTTTCC TTTTAAACATTTTCTGGCCATTGAGGAGATGATGAGTGCACATGGTCATAAACAAGTTCATTCTTTTTTAACTTTGTGAC TCGTGAGTGGCGCAATGAAATGGCTGGAAAACATGATGTAAATTGGGATTAGGCTCCTCGAAAGCAAGCTTGTCTTCGAA GCAAGTAAATTAGGCTATATCCATTGTTTTCCTTACCCTTACTTTCACATTTTAGAGGAGCTTTTTTGTTTAAAACGCAC AAAAGTGATGAAGGGAAAGGGAATATGCTGATTACTGACAGTAGAAAAGTACTATTCTGTTTCAGGAGTAACATCACATG TTAAAAGATAAAAGAAGGCAAAACTTATGCCATAACTGAAGAATCATAAGAAAGTAACTGCTCCCTAAACAAAAGCTGAA AAATAAATGCTGTCTAAAACTGAAACATAACAGCCCATTAGCAGCCCTAAGCATTAGTACGCACATTCACTGTTGACTGG ATAAAAATGTATTGTTTTTATTTTTAGATGTTAATTATACTGTTGAATCAAGGCTGGCAAGTTATAATCCTTTACTTTCT TTACTATTTGCATGTTTCAGGGAAAAAAGTTGGCAGGACAACTGAACTTCCAAAGACCGAAGAGGTCATTGAGCAGGTGG ATATAAGAACAATTGCTGCATCACCATTTCAATATGATCTGAAGCTTGAAGATGTGGAGACATTCTTCAGTCAATATGCT AAGGTAACAATAGCACCTGTCGCTATCAGTTCTTAAGTACAATTTACTTTGTGAGCTCTTTACTTTTTCCTTTTGAATTT ATATGACAGACAGCGTTTTTTTTGTACAGGTCAACAGTGTGCGTCTTCCCCGTCATGTTGGGGACAAAAAGTTCTTCTGT GGCACTGCCCTGATTGAATTCTCTTCAGAGGAAGAAGTAGAAAAAGTTCTCAAGGAAAAATTGGTCTATGCTGGGGCTGA GTTAGAATTGAAACCAAAGTAAGGGTGCTTATAGCCATTCAATACTATTGTCTGGGATGAATTATGCTAAAGAGAGTTCA ATTTGTATTTTATAGATTATATAGACTATAGAATATTTTTGTTATTTTGTATGCAATATTTGAAAAGAAGGTCCAGACTG ATTATATTGGTGAAGATTTTAATTTCACTGCTTTTTATATATGTGGATATTTGCTGATCTTTATACCCAATTCAGGAAGG ACTTTGATGCAGAGAGACAAAAGGAGTTAGAAGAATATGAAAAATCTCATCCATCTACTGGTTCAAATCATCAGAATAAC TCAGATGCAGATGAATAGTAAGAAGCTGCTAATTTTTCCTATACCTCATTTAAAAAGGAGGTAGACACATATGAACTGAT GTTTTTTCTTTCATTTTTATAACAGCTACCCAAAAGGCTTAATTATTGCCTTCAAACTAAAGAGCATTTCTGATGAAGTT CCTTCAGAACAAAATGGTGTTGATCAGCAAGCCAATGACAATGCTGTTGTTTCTAAAACTGATGAAAAAATTCCATCTGA AATTACTTCTGAGAAAAATGACGAAAAGGTTTCAGAAAATGTTGACAACGATGAAGAAAATAATGAGATAAAAGATGGAA AGAAAACTCAAGATGAAGAGAAGAATCCCAAAGCTGATGAAAAGCTTTCAGCTGCTGCTTGCAAGGATAACATGGATGTT GTCTTGCGTGAGGATTTGAAGCGTGTGTTTGAGAAGTTTGGTGCAGTGAAGGTACTTGGGTTTCCCCCTTCCATGTTTTG GAATTTTAAGCCTTCTGATAATGTTTTTACAGCTTTCTACTTTAACTAATCTTTATTTTTTGATTTCTGAGTTTATTTTC CCGCTTTTAGAATGATGCTTTTGGTATTTTCTTTAATAATCTCCTCGATGGTGGTTAGATCCCTGCTACTAAGAATTGGT CAGCCTTTTATGAATTGATTAAATATTATTGTTTTCTTGTTTAGTACATTGATTTCACGATGGGAGCAGACTCAGGATTC ATTCGATTTGAAGAAAGTGAAGCGGCTCAAAAATCTCGTGCTGCTGCAGTTCTTTCAGAGAAGGGAGGCTTGGTTGTAAA GAATTATATTGCTATGCTAGATCCAGTGACTGGTTAGTTCCACTTCAAATTTATCTATTAATTTTTTAACACATTTATCT CATTTTTGGTTTGATTTCATTCGTAGTGACTTAGTCTCAAATTTTTTTTTTCATTAAGTGGTTTGCAATGATATAAGCTG TGCTCAATTTAAATGGTAAAAACTTGCACTCGATGAACAAACCTACTTATCCTGGAGAGAAGTGATTTAGATAGCATAGT TGCCGAGATTGGTACCAAGCTGGTATCCGCTGAGATTTGTCTGACAGTAAATTTGATTGGTTGATTGAGCTTCTTTTGCT TGTTATATGATCTCAGGTGAGGCTGAAAAAGAATACTGGTCCCTGCTTCGTGGTAATCAAGACAAGCGTCGAGATAATTT TAAGGGTAACCGAGGAAGGTAAGTGTCTGGATTGCACGATGTTATGATTTTGATTTCACTATTTTTTCCCCTTTGAGGGT TTTCCTTTGTTTTGCTGGTTACTGTGGAAGTGGTGGAACTGGGATTTAATTATATCATCTCATCACACAGGGGAGGTAGG CATGGTAGAGGGGGAGGGAGACACTCACGCTCAAGAGAAAATGACTCTGCAGCAGGTCGTCCAAATAAAGTTCAGAAAGT TGGTACAGCGGCATAATGGATCATTCGAAACTATCTTGTTAGGTGCAGGGAGATTTTCGGTGAACCAGATTACTGGTTGG TCACCTGATGTATTCTCAGCTTCTGAAGTTTTGATTTTATGGTTTTCTGTTTTGCATTGTTATTATGTTGCAACGTTTCT ATAATTTAATAACTTTTATCCGTATGATTTCCTCCACCGCTTCTCTAACTCTATTATATCACATTATCTTCACATACCAT TACAGCCGCGCATAGTTGTTGGATAGCGGTGTCTCTTAAACATGTTGACAAGGGTTTGGATCTTAGCCGCGTGTATGGAA AATGATTTATTACCCACTTTTGTGATCACTACGTCACGAAAGAGTTAAGTCTTTCTTCCTCTTGTGGTTCACACTTCACT GAATACTGTCTATTAATTCTTAAAATTGGTCTATTAGCTAGTGGCTAGTTGCCACCATTGCAATCCATTTTCAGTGTTGT ATGCCTAGTCAATTTGTTTTTTGGGTGTAGACCCAGAGTCAATTAATTACACATTGACAATCTTAATTCTTAACACTCAC GCTGGACTTCATGTCATTATTTGCATTCAATAGATTCAATCTTGTGGCGTTAACTAATTTGAAAATTTTCAAAAGTTAGT TCATCTGTCGCTTTAGATTTAAGCCTTTCTCAAATATTTCTGTAGTATTGTGTTTTTTTATAACAGTTGGGGTTTTCTTA CATAAATACTACTAATCCTTTTTTTTGACATAATAAACGAATCATTTTTCAAAAGTTCAGTATAACATTTTACGATAAGC TGGC
CDS sequence (LotjaGi1g1v0400000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCGACGCCGACCACGTTGAACGAAGAAACAACCAAGAAAGTGATACGACAAGTGGAGTTCTACTTCAGTGATAGCAA CCTTCCCAAGGACAATTTTATGCGGAAAACCGTCTCTGAAAGCGAAGATGGCATGGTTAGTTTGGCTTTGCTTTGTTCTT TCAACCGAATGCGCCAGCACCTTAATTTGGGTGATGTAAAGGCTGAGGATGTGACTGAAGATACTGTTAAGGCTGTTGCT CATGTTTTGAGAAATTCTGCTTCACTCAAAGTCTCTGAAGATGGGAAAAAAGTTGGCAGGACAACTGAACTTCCAAAGAC CGAAGAGGTCATTGAGCAGGTGGATATAAGAACAATTGCTGCATCACCATTTCAATATGATCTGAAGCTTGAAGATGTGG AGACATTCTTCAGTCAATATGCTAAGGTCAACAGTGTGCGTCTTCCCCGTCATGTTGGGGACAAAAAGTTCTTCTGTGGC ACTGCCCTGATTGAATTCTCTTCAGAGGAAGAAGTAGAAAAAGTTCTCAAGGAAAAATTGGTCTATGCTGGGGCTGAGTT AGAATTGAAACCAAAGAAGGACTTTGATGCAGAGAGACAAAAGGAGTTAGAAGAATATGAAAAATCTCATCCATCTACTG GTTCAAATCATCAGAATAACTCAGATGCAGATGAATACTACCCAAAAGGCTTAATTATTGCCTTCAAACTAAAGAGCATT TCTGATGAAGTTCCTTCAGAACAAAATGGTGTTGATCAGCAAGCCAATGACAATGCTGTTGTTTCTAAAACTGATGAAAA AATTCCATCTGAAATTACTTCTGAGAAAAATGACGAAAAGGTTTCAGAAAATGTTGACAACGATGAAGAAAATAATGAGA TAAAAGATGGAAAGAAAACTCAAGATGAAGAGAAGAATCCCAAAGCTGATGAAAAGCTTTCAGCTGCTGCTTGCAAGGAT AACATGGATGTTGTCTTGCGTGAGGATTTGAAGCGTGTGTTTGAGAAGTTTGGTGCAGTGAAGTACATTGATTTCACGAT GGGAGCAGACTCAGGATTCATTCGATTTGAAGAAAGTGAAGCGGCTCAAAAATCTCGTGCTGCTGCAGTTCTTTCAGAGA AGGGAGGCTTGGTTGTAAAGAATTATATTGCTATGCTAGATCCAGTGACTGGTGAGGCTGAAAAAGAATACTGGTCCCTG CTTCGTGGTAATCAAGACAAGCGTCGAGATAATTTTAAGGGTAACCGAGGAAGGGGAGGTAGGCATGGTAGAGGGGGAGG GAGACACTCACGCTCAAGAGAAAATGACTCTGCAGCAGGTCGTCCAAATAAAGTTCAGAAAGTTGGTACAGCGGCATAA
Protein sequence (LotjaGi1g1v0400000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATPTTLNEETTKKVIRQVEFYFSDSNLPKDNFMRKTVSESEDGMVSLALLCSFNRMRQHLNLGDVKAEDVTEDTVKAVA HVLRNSASLKVSEDGKKVGRTTELPKTEEVIEQVDIRTIAASPFQYDLKLEDVETFFSQYAKVNSVRLPRHVGDKKFFCG TALIEFSSEEEVEKVLKEKLVYAGAELELKPKKDFDAERQKELEEYEKSHPSTGSNHQNNSDADEYYPKGLIIAFKLKSI SDEVPSEQNGVDQQANDNAVVSKTDEKIPSEITSEKNDEKVSENVDNDEENNEIKDGKKTQDEEKNPKADEKLSAAACKD NMDVVLREDLKRVFEKFGAVKYIDFTMGADSGFIRFEESEAAQKSRAAAVLSEKGGLVVKNYIAMLDPVTGEAEKEYWSL LRGNQDKRRDNFKGNRGRGGRHGRGGGRHSRSRENDSAAGRPNKVQKVGTAA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 428 | 428 | 1.1E-195 | – | |
| PANTHER | 1 | 428 | 428 | 1.1E-195 | – | |
| Gene3D | 3 | 105 | 103 | 1.2E-33 | ||
| SUPERFAMILY | 4 | 106 | 103 | 5.44E-21 | ||
| ProSiteProfiles | 5 | 108 | 104 | 24.068 | ||
| SMART | 9 | 101 | 93 | 3.3E-36 | ||
| CDD | 11 | 100 | 90 | 2.17761E-42 | – | |
| Pfam | 15 | 84 | 70 | 5.6E-22 | ||
| PRINTS | 18 | 35 | 18 | 3.0E-10 | ||
| PRINTS | 44 | 59 | 16 | 3.0E-10 | ||
| SUPERFAMILY | 109 | 194 | 86 | 5.16E-11 | ||
| Gene3D | 110 | 208 | 99 | 1.3E-13 | ||
| ProSiteProfiles | 117 | 202 | 86 | 10.104 | ||
| SMART | 118 | 190 | 73 | 8.1E-4 | ||
| Pfam | 125 | 178 | 54 | 9.3E-7 | ||
| PRINTS | 158 | 176 | 19 | 3.0E-10 | ||
| MobiDBLite | 200 | 224 | 25 | - | – | |
| MobiDBLite | 245 | 314 | 70 | - | – | |
| MobiDBLite | 245 | 263 | 19 | - | – | |
| MobiDBLite | 268 | 314 | 47 | - | – | |
| Gene3D | 295 | 418 | 124 | 5.0E-23 | ||
| SMART | 321 | 380 | 60 | 2.6 | ||
| CDD | 323 | 386 | 64 | 1.45199E-18 | – | |
| Pfam | 325 | 416 | 92 | 3.3E-18 | ||
| SUPERFAMILY | 327 | 413 | 87 | 1.36E-8 | ||
| MobiDBLite | 408 | 452 | 45 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | RNA processing | Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules. | ||
| Cellular component | Ribonucleoprotein complex | A macromolecular complex containing both protein and RNA molecules. |
Expression pattern of LotjaGi1g1v0400000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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