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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0411200 |
| Transcript ID | LotjaGi1g1v0411200.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | KH domain-containing protein family; TAIR: AT1G51580.1 RNA-binding KH domain-containing protein; Swiss-Prot: sp|Q8W4B1|RCF3_ARATH RNA-binding KH domain-containing protein RCF3; TrEMBL-Plants: tr|V7AXD5|V7AXD5_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0411200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:90182409..90187993) extracted from Lotus japonicus Gifu genome v1.2.
ATAAAGTATAGCAAGTAGAGAAATAAGGGCCCAATCCCAAATTGGTTTGAGGCTGATTGAGTAGCCCATACTAACTCCAA AGTCCAACGAGCCCATCTTGCTAGCTAGGTCACACTGCGAAGGTGGAGTAGAGGATAATTCTTCCGACGCCGGTGCTCTT TCGTCTCCGTCAGATTCCCGAACAAGGTTCGAGGTTAACGCACATCGCAGTTTCAATGGCTTCTTCCAAGAGACCGAATG CGGAGTCGAAGAGGAAAGGGAAACGCCAGAAATCCGGTGGTGGTGGTTCTTCATCGTTGGATGCGGCTGCTGGCGGTGTT GTTTTCCGTATGCTCTGCCCTGCTACTAGAATAGGCGGTGTAATCGGCAAAGGTGGTGGCATCATATCACAAATTCGCCA GGAAACCGGTGTCAATATTAAGATTGACGAGCCTACACCTGGTTGTGATGAGAGGGTTATCATTTTCTCGGGTTCTGAAA AGGAAAACGGAGAAGACAACGTTGACAAGGAAAAGGAAAAGGAAAAGGAGGCTAGTAATGATGAGACTGAGAGCAAAGGG AAGGGTGATGAGGAGGAAGAGGCTGAAGAAAAGGGTGGTGATAATGATGATGTTGAAGATAAAGAGGTTGAAGATTCGCA GGGCGAGAAGGCGAATTCGAATTCGGTTATTCATTCGGCTATTCGGAAGGCTCTGTCATTAGTTTTTGATAGGATGGTTG AAGGAGTGGAGGATACAGCTGATGGTGATGAAGAAAGTGGTAAAGCTTCTTCGTTTGTGTTTAGGCTGCTGATCCTTTCT AATCAAGTTGGCTGCCTTCTGGGTAAGGGTGGGAGTGTGATCAAGAAAATGTCAGCTGAAAGCGGGGCGCAGATTCGGAT TCTTCCTAAAGATAAACTTCCTGTGTGTGCTTCAGCATCTGATGAGATTGTTCAGGTAAATGTTTGTCATTCCTTGAAAT TACCATTGATTGTTTTATTCCAAGTAGCAAACGTCGAATCGTTGCTTTGTCAAATGTTATTTGATTAGCTGTAAAATGTG AGCTTTGCTTTGAATATATGCATTTTTAGTTGTTTTAGTGACATGCAATAAGGGGTTGAAGTACAGAGTAGTGGTTTTGT AGTTGCTATCGTGGTGGACATTTCGCATTTTAATAGCTGGTCATGCTTGTTTGTTGCCTTGTTTGAACAATATTTTTACA TACTTATGCTGTGGTGTAGATCACAGGAGGAGTTGAAGTTGTCAGGAAAGCTCTTCAATCTGTCTCTCTCCAACTTTTGG AAAATCCACCTCGTGACCATGAATCCCTGTCTACCAATTTTACTGGGCCGTCATCTCATTCATCTAGTAAAATCCCATCA CACAATCGTTCCTTTGCTGCGGGGCCTACTGATACTTCTGTTTTCCATTCTGCTCCTTCTCTGATTTCCAAATTTCATGA AGGCGCCATCCATGGTCGTATGAGGCCTTCACAGGAAATGCTTACATTTCGTTTATTGTGTCCTGCCGAAAAGGTAGGAA ATTTAATTGGTAAAGGTGGAGCAATCATAAAGTCTGTGCAGCAAGAGACAGCTAGTGAAATCAAGGTCATAGATGCCGTT CCTGATTCAGAGGACTGTGTTATTGTCATATCTGGTCCAGCGGTGGGGTGCAAGTTTCATACTTTCTCGTTTGAGTTATT GTTGTGGAGTTGCATTTGTTTTTACTGATGTTAGATTAATAATTGCAGCACCCTGATGATAGAATATCACCCGTGCAAGA AGCTGTGTTTCGTGTGCAAAATAGAGTAGCCAGGGCTATACCCGATGTGAACGAGCACAGTATGCTAGCAAGGGTTCTTG TTTCTTCAAATCAAATAGGTTGTCTCCTTGGCAAGGGTGGTTCCATCATAACTGAAATGAGGAAGTTATCAGGTGCCCAT ATCCGTATATTAGGAAAGGATAAGATTCCTAAGTGTGCTTCAGAAAATGAAGAAGTAATTCAGGTGCAATTTCTACTGAG TTTGATATTTGTGTAAATTTGCAATCTGCCAGTTTATCCCACATGAGTATTATTTACATAATTATGTCTATTTCTTGTAA TTATTCAGAATAAGTTAAATTACTCCCAATTGGATTTGGTAGATGGTGGTGGATATCACTTAAATTTATAACTGAATAGC CGTGATTTCTTAGGGTAAGCTACGACAAAAACAATCATAATCTCAAGTAGTGTATCTTTTGAAATTGAGCAGTTGGGTTA ACTGGGTGATAATTACATTTATGTGGCACTGATTTATCAATTATAGTAATGAGCATAAGATTTGTACTTTGTGATTGGTG TTTATAAATTTAAACTATTATTACCTCATGTTATTTAATGTTTTAAATTGTTGTTAAATATCTCCTGTTAAATTTTTGAC AGATAACTGGAGAAATTGAGGCAGTGCATGATGCTCTTTTGCAAATAACCACAAGATTAAAACATCATTTCTTTCGTGAT GCATATCCATCTGCCAATTATCCTTCAAATCCTGCATTTTTAGATAACCTTCCTCCATTCCTGCCTTATTTGGGGAGGCG AGGGATTTCACCTCCTGGAATGTATTCTGATCTAGGTCCACCACCTCCACATGCGGGTTTTCCCCTTGATGATCGCCCTC CTTTTATGAATAATATACACAGATCAGGCATTCCTCCTCACATTGCTGAAAGGAAGCCTTGGGGTCCTCAGGTATTGGAC TGCTACTACTTCTGCTTCCTTTCGAGCATATCTTCATGTCATTTAGGTGAATATTGAAACTAGTCGGATTGATATTATTA AAGTTGAAAATGGGGTGGATGGTAGTCCAACAGGCTTGCTTAGCATAATAAATGTGTATACAATAAATATATGTCATGAA ACATAGCTTTGAGGTGATGTATACTCTTACTTCTGAAATTCTAGACTGTTTTAACTTTTAAGTTTCTTATTGTATAAAAT ATATCTTTCACTTTTGACTTCAGAAGTTGCAACAACTTAGTTCAATCTCTGGCAGGAACTAGCTAGCTGGTTCTTCTAAC TGTAAACTTTCAGAAGTAATTGCATATCATTCTTTTTTTATGAAAAGCTGTTATGTTCAAACAAGCTACTTTCCCACACT TTGCACAAAATCTTTTTTCCCACATTTATATGGCTACTTAATTGTGAGTTTATCATATTGGATATCTGTTTTCCAGGGGA TACTTGAAGGTGGTGGACACATGGGCTTGCCAGACTTTGCCGGAGGTCCTCCTAGAAGAATTTTGGGATTTGGAGGGTGT GTATCACTGTCAATAATTTTTTTTTTGTCAATCCATCCCTCAAATTTTGGTTTTTGATAGAGCTCAATGACGTAGTGTGA CCAACCTCACTTAGTGTGATAAGACTTTTGTTATTATTTTTTAAGCCCCTTTTAATCTCTCTTTCTTTCCCTCTCTCAGT CTGTCTTCTCTTTGTGTGTGTGCGCACGTGTACTAACTTAGTTTTGTCATGCAGAGGGAACCAACCGATTATCACTCACA CAAGTGCCACTGTCGAAGTTGTTGTTCCTCGAGCGGTGGTGCCTGAAATATATGGGGAAGATGGTGAATGCCTGAGACAA ATACTTCAGGTGAACCTATTGCATCTGATAATCTATGTTCATTTTGTAACTTTTAACTATGCTCGTGAGTTTACAATGTC CCACAGAACACACAAATGTGTTGTCAAATGGTGGCCATGGGTGTATGGCATGTCAGCTTTTGAAAAAGTGCCATATGTGA TGGCCATCCATGGCAGAAATAATTGGTAAAAAGCCTAAAAACGTAGAAAACCAAGGAGGAGGTTTAGGGACCCATTTTTA CCCCTAATGACTATTCAACTTCATAATATCTCAAACTGTAATGACCCGAACTCTCACACAAACCCACACATCTATGCTTT TGCACATCTTTGCTGTCTACTCATTCACATGTCTTTGCTCTTACTTCAAAGGCTCAAACTCACTTGGCCAGCTGCTTCCG CATCTCTTTTACCATCTGCAGTGGATGGCAATTCTTCAGTTCTTGCCCTGTGTATCCTGTTTTGTTCTCTATTCCTTTTT CCATCCTTTTCTATTTCCTTCTTTGTTCTATTTTATTCATTTCTTTCTCTATGATTCTGTCCTCTTTGTTCTATGGTTCA AGGATTGCTAATAACAATGCTTTTTTCATGTGATTTTAGTTATTGCAATGTGTCTAGTTTATGTTTCTTGACATGTGATT AGTCTTTTTATTTTTATTATATTTTGCAGATTTTTGGTAGAGAAAGGTTAGTTAGGCACTTATTAATAACTATTTTCAAC ATACTCTTTCTATTTCTTGGGACTCACACGAATTTCAACTACCAAGGGACCGAGTTAGAAAGTGTCTTAAAGAATGTTTT GTTAACATTCCTCGTAATATATTTTTTCTATATATAATACTCATATACTGTTATTAAAGCTGTCATACTTCCGCCATGGA CTATAATGGCAGTTTTCAAATTGTTATGGCAGATTTTTGTATCGCTTACACTGTGAATGCTGTGTAAGCGTGTGAGAAAA TGTATTGTTGGATAGCATGATTGTTTGAGGAATTTTTTGTATTATTTGAATGATTTTGACATTGACAATGTGATCCACAC TGACAGATCTCTGATGCAAAGATTATGATTACTGATCCAAAGCCCGGAGCTGTGGAAACTAAAATTATAATTTCTGGAAC CCCAGAGCAAACTCATGCTGCACAAAGTCTTATTCAGGCGTTTGTCATGAGTGAGAGGGATTCTGGTTGAACTCTTAATT TTGGTAATACTCTAGATGTGTCTCTTTTTGTCTGGCTGATGTATTTGACCTCAGCTCTCTGCTTCATGTTACAATTTTTA GTAGAATGTAAATTGTAAAATATTATCCTATGAAAACTAAGACTATGCTCCAGCTTTGCTTTATGTTCATTTGGTTTGAC TTTTTGAACTCGAGTAACACGATACATCCTACCTTCGGTAGATTTACATTAAGTTCAAAATGTATGCCTTTTCAATATGG CAGAAAACCAAACTCAAGTGATTGAGTACTGATTTGAGGCTAGTAGAACATAAGCAGTAAACAGTTTCAAACATTTCTTC ATATCTTCAAGCAGATTGTTGTATGGGTATTGGACTCATTTAGGGTATCGTATAAACCTGAACATTATTGAACCCCCATT CATAAATTTGTCGAAAGAAACATGCAGGGAGATTTAGGATTTCTATTGGACTTGAATAACACAGAATGAATATATCCATG ACAGTTAAGGAGTGAAGTATTTCATATGACATTCTGCGCGTAGTAAATTAAATGCTTACTTTTACTAGTGTTGTCCCTGC CATTGTAAGCTTAAATTTTTTCCAGTGACTTATGAATCACATATATAGATAGTTTTTGATTCAGTTTGTAGTTATGCACA GTTAGTTTTTAGTTATGCACGGTTATATTTAATACTCCCTCCGTCTCCTATTATACGCCATTTTTTCTAAGTATTTTTTT GTCTCAAAGTATAAGTCACTTCACAATATCGATGTAACATTTTATTTTTCCATGTTTATCCTTAT
CDS sequence (LotjaGi1g1v0411200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCTTCCAAGAGACCGAATGCGGAGTCGAAGAGGAAAGGGAAACGCCAGAAATCCGGTGGTGGTGGTTCTTCATC GTTGGATGCGGCTGCTGGCGGTGTTGTTTTCCGTATGCTCTGCCCTGCTACTAGAATAGGCGGTGTAATCGGCAAAGGTG GTGGCATCATATCACAAATTCGCCAGGAAACCGGTGTCAATATTAAGATTGACGAGCCTACACCTGGTTGTGATGAGAGG GTTATCATTTTCTCGGGTTCTGAAAAGGAAAACGGAGAAGACAACGTTGACAAGGAAAAGGAAAAGGAAAAGGAGGCTAG TAATGATGAGACTGAGAGCAAAGGGAAGGGTGATGAGGAGGAAGAGGCTGAAGAAAAGGGTGGTGATAATGATGATGTTG AAGATAAAGAGGTTGAAGATTCGCAGGGCGAGAAGGCGAATTCGAATTCGGTTATTCATTCGGCTATTCGGAAGGCTCTG TCATTAGTTTTTGATAGGATGGTTGAAGGAGTGGAGGATACAGCTGATGGTGATGAAGAAAGTGGTAAAGCTTCTTCGTT TGTGTTTAGGCTGCTGATCCTTTCTAATCAAGTTGGCTGCCTTCTGGGTAAGGGTGGGAGTGTGATCAAGAAAATGTCAG CTGAAAGCGGGGCGCAGATTCGGATTCTTCCTAAAGATAAACTTCCTGTGTGTGCTTCAGCATCTGATGAGATTGTTCAG ATCACAGGAGGAGTTGAAGTTGTCAGGAAAGCTCTTCAATCTGTCTCTCTCCAACTTTTGGAAAATCCACCTCGTGACCA TGAATCCCTGTCTACCAATTTTACTGGGCCGTCATCTCATTCATCTAGTAAAATCCCATCACACAATCGTTCCTTTGCTG CGGGGCCTACTGATACTTCTGTTTTCCATTCTGCTCCTTCTCTGATTTCCAAATTTCATGAAGGCGCCATCCATGGTCGT ATGAGGCCTTCACAGGAAATGCTTACATTTCGTTTATTGTGTCCTGCCGAAAAGGTAGGAAATTTAATTGGTAAAGGTGG AGCAATCATAAAGTCTGTGCAGCAAGAGACAGCTAGTGAAATCAAGGTCATAGATGCCGTTCCTGATTCAGAGGACTGTG TTATTGTCATATCTGGTCCAGCGCACCCTGATGATAGAATATCACCCGTGCAAGAAGCTGTGTTTCGTGTGCAAAATAGA GTAGCCAGGGCTATACCCGATGTGAACGAGCACAGTATGCTAGCAAGGGTTCTTGTTTCTTCAAATCAAATAGGTTGTCT CCTTGGCAAGGGTGGTTCCATCATAACTGAAATGAGGAAGTTATCAGGTGCCCATATCCGTATATTAGGAAAGGATAAGA TTCCTAAGTGTGCTTCAGAAAATGAAGAAGTAATTCAGATAACTGGAGAAATTGAGGCAGTGCATGATGCTCTTTTGCAA ATAACCACAAGATTAAAACATCATTTCTTTCGTGATGCATATCCATCTGCCAATTATCCTTCAAATCCTGCATTTTTAGA TAACCTTCCTCCATTCCTGCCTTATTTGGGGAGGCGAGGGATTTCACCTCCTGGAATGTATTCTGATCTAGGTCCACCAC CTCCACATGCGGGTTTTCCCCTTGATGATCGCCCTCCTTTTATGAATAATATACACAGATCAGGCATTCCTCCTCACATT GCTGAAAGGAAGCCTTGGGGTCCTCAGGGGATACTTGAAGGTGGTGGACACATGGGCTTGCCAGACTTTGCCGGAGGTCC TCCTAGAAGAATTTTGGGATTTGGAGGAGGGAACCAACCGATTATCACTCACACAAGTGCCACTGTCGAAGTTGTTGTTC CTCGAGCGGTGGTGCCTGAAATATATGGGGAAGATGGTGAATGCCTGAGACAAATACTTCAGATCTCTGATGCAAAGATT ATGATTACTGATCCAAAGCCCGGAGCTGTGGAAACTAAAATTATAATTTCTGGAACCCCAGAGCAAACTCATGCTGCACA AAGTCTTATTCAGGCGTTTGTCATGAGTGAGAGGGATTCTGGTTGA
Protein sequence (LotjaGi1g1v0411200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASSKRPNAESKRKGKRQKSGGGGSSSLDAAAGGVVFRMLCPATRIGGVIGKGGGIISQIRQETGVNIKIDEPTPGCDER VIIFSGSEKENGEDNVDKEKEKEKEASNDETESKGKGDEEEEAEEKGGDNDDVEDKEVEDSQGEKANSNSVIHSAIRKAL SLVFDRMVEGVEDTADGDEESGKASSFVFRLLILSNQVGCLLGKGGSVIKKMSAESGAQIRILPKDKLPVCASASDEIVQ ITGGVEVVRKALQSVSLQLLENPPRDHESLSTNFTGPSSHSSSKIPSHNRSFAAGPTDTSVFHSAPSLISKFHEGAIHGR MRPSQEMLTFRLLCPAEKVGNLIGKGGAIIKSVQQETASEIKVIDAVPDSEDCVIVISGPAHPDDRISPVQEAVFRVQNR VARAIPDVNEHSMLARVLVSSNQIGCLLGKGGSIITEMRKLSGAHIRILGKDKIPKCASENEEVIQITGEIEAVHDALLQ ITTRLKHHFFRDAYPSANYPSNPAFLDNLPPFLPYLGRRGISPPGMYSDLGPPPPHAGFPLDDRPPFMNNIHRSGIPPHI AERKPWGPQGILEGGGHMGLPDFAGGPPRRILGFGGGNQPIITHTSATVEVVVPRAVVPEIYGEDGECLRQILQISDAKI MITDPKPGAVETKIIISGTPEQTHAAQSLIQAFVMSERDSG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 31 | 31 | - | – | |
| PANTHER | 6 | 671 | 666 | 6.0E-234 | – | |
| PANTHER | 6 | 671 | 666 | 6.0E-234 | – | |
| SUPERFAMILY | 29 | 88 | 60 | 7.45E-14 | ||
| Gene3D | 33 | 99 | 67 | 2.3E-15 | ||
| SMART | 33 | 108 | 76 | 4.7E-9 | ||
| ProSiteProfiles | 34 | 103 | 70 | 14.823 | – | |
| Pfam | 37 | 89 | 53 | 2.9E-12 | ||
| CDD | 59 | 89 | 31 | 1.8837E-4 | – | |
| MobiDBLite | 84 | 150 | 67 | - | – | |
| MobiDBLite | 84 | 114 | 31 | - | – | |
| Coils | 89 | 109 | 21 | - | – | |
| MobiDBLite | 115 | 138 | 24 | - | – | |
| Gene3D | 128 | 262 | 135 | 8.4E-17 | – | |
| SUPERFAMILY | 178 | 261 | 84 | 1.18E-13 | ||
| SMART | 185 | 260 | 76 | 9.7E-10 | ||
| ProSiteProfiles | 186 | 255 | 70 | 15.137 | – | |
| CDD | 188 | 256 | 69 | 1.89079E-17 | – | |
| Pfam | 189 | 253 | 65 | 3.3E-11 | ||
| MobiDBLite | 263 | 297 | 35 | - | – | |
| SUPERFAMILY | 320 | 382 | 63 | 6.01E-13 | ||
| Gene3D | 324 | 404 | 81 | 2.7E-14 | ||
| SMART | 326 | 402 | 77 | 1.5E-9 | ||
| ProSiteProfiles | 327 | 394 | 68 | 14.718 | – | |
| CDD | 329 | 398 | 70 | 3.92829E-17 | – | |
| Pfam | 329 | 381 | 53 | 2.0E-11 | ||
| Gene3D | 407 | 487 | 81 | 7.9E-19 | ||
| SMART | 411 | 486 | 76 | 7.0E-9 | ||
| ProSiteProfiles | 412 | 481 | 70 | 15.64 | – | |
| SUPERFAMILY | 413 | 495 | 83 | 1.67E-15 | ||
| Pfam | 416 | 481 | 66 | 9.7E-15 | ||
| CDD | 416 | 482 | 67 | 7.38663E-20 | – | |
| Gene3D | 603 | 681 | 79 | 9.3E-15 | ||
| SMART | 605 | 675 | 71 | 1.2E-5 | ||
| SUPERFAMILY | 605 | 675 | 71 | 8.33E-13 | ||
| ProSiteProfiles | 606 | 670 | 65 | 13.586 | – | |
| Pfam | 608 | 671 | 64 | 1.5E-8 | ||
| CDD | 621 | 671 | 51 | 6.70373E-7 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. |
Expression pattern of LotjaGi1g1v0411200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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