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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0412500 |
| Transcript ID | LotjaGi1g1v0412500.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Tubulin alpha chain; TAIR: AT4G14960.1 Tubulin/FtsZ family protein; Swiss-Prot: sp|Q6VAG0|TBA2_GOSHI Tubulin alpha-2 chain; TrEMBL-Plants: tr|W9QUC8|W9QUC8_9ROSA Tubulin alpha chain; Found in the gene: LotjaGi1g1v0412500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:90374628..90376319) extracted from Lotus japonicus Gifu genome v1.2.
ATGAGGGAGTGCATTTCAATCCACATTGGTCAGGCCGGTATCCAGGTCGGAAATGCCTGCTGGGAACTCTACTGCCTCGA ACACGGCATTCAGGTACCAATTCCTGCTTCAATTTTTATTTTCATTCCCAATTTTCCCGAGAAAATTTGATTATTGTTGT TGTTTGTTGCTAGATCTAGGGTTTTACTCTGTTCTGGATTCTGAATCTTATGAATCTGTGTTTGATTTGTTGTTTTTCTT CAGCCTGATGGCCAGATGCCGAGTGACAAGACCGTCGGCGGAGGAGACGACGCCTTCAACACCTTCTTCAGCGAAACCGG CGCCGGAAAGCACGTTCCACGCGCCGTCTTCGTGGATCTGGAGCCAACCGTCATCGACGAGGTGAGAACCGGCGCCTACC GCCAACTCTTCCACCCTGAGCAACTCATCAGCGGCAAGGAGGACGCCGCCAACAACTTCGCCCGTGGTCACTACACTATC GGTAAAGAGATCGTTGATCTCTGCCTTGACAGGATCCGCAAGCTCGCTGATAACTGCACCGGGCTTCAGGGATTCTTGGT GTTCAACGCTGTTGGTGGTGGTACCGGTTCTGGTCTCGGATCTCTTCTTCTGGAGCGTCTCTCTGTTGATTACGGCAAGA AATCGAAGCTAGGGTTTACTGTTTACCCTTCCCCTCAGGTTTCTACATCAGTTGTTGAACCTTACAACAGCGTCCTTTCA ACTCACTCCCTCCTGGAGCACACCGATGTCGCTGTGCTTCTTGATAATGAAGCCATCTATGACATTTGCAGGCGCTCCCT TGACATCGAGCGTCCTACATACACCAACCTCAACCGTCTTGTTTCTCAGGTCTGAATCTAAATCTTGAAATGTTTTTCAA TTCATTTCAGTTTTTGAATTTGGATTGTGTTCAATTTTCTGAGTGTTTTGATTTTGATTGTGCAGGTGATTTCATCTCTC ACTGCCTCTTTGAGGTTTGATGGAGCATTGAATGTTGATGTGACTGAGTTCCAAACCAACTTGGTTCCATACCCCAGGAT CCATTTCATGCTTTCCTCATACGCCCCTGTGATCTCTGCTGAGAAGGCATACCATGAGCAACTCTCCGTTGCTGAGATCA CCAACAGCGCCTTCGAGCCGTCTTCCATGATGGCCAAGTGTGACCCTCGCCATGGAAAGTACATGGCATGCTGTTTGATG TACCGTGGTGATGTTGTTCCCAAGGATGTGAATGCTGCTGTTGCCACCATCAAGACCAAGCGCACCATCCAGTTTGTTGA TTGGTGCCCAACTGGGTTCAAGTGCGGTATCAACTACCAGCCACCAACTGTTGTTCCTGGTGGTGATCTTGCTAAGGTGC AGAGGGCTGTGTGCATGATCTCTAACTCCACCAGTGTTGCTGAGGTGTTCTCCAGGATTGACCACAAGTTTGATCTGATG TATGCTAAGCGTGCTTTCGTGCATTGGTATGTGGGTGAGGGTATGGAAGAGGGTGAATTCTCAGAGGCTCGTGAGGATCT TGCTGCTTTGGAGAAGGACTATGAGGAGGTGGGTGCTGAGTCCGGTGATGGAGAGGATGTTGACGGTGATGAAGACTATT AGGATATGGCTATGTCTATCAATGTGTTTGGATTTGTGCTTTTTTCTGTTTTCTGTTGGGACAAAAAATTATGTTTGTTT GCTTTATCGTGA
CDS sequence (LotjaGi1g1v0412500.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGGGAGTGCATTTCAATCCACATTGGTCAGGCCGGTATCCAGGTCGGAAATGCCTGCTGGGAACTCTACTGCCTCGA ACACGGCATTCAGCCTGATGGCCAGATGCCGAGTGACAAGACCGTCGGCGGAGGAGACGACGCCTTCAACACCTTCTTCA GCGAAACCGGCGCCGGAAAGCACGTTCCACGCGCCGTCTTCGTGGATCTGGAGCCAACCGTCATCGACGAGGTGAGAACC GGCGCCTACCGCCAACTCTTCCACCCTGAGCAACTCATCAGCGGCAAGGAGGACGCCGCCAACAACTTCGCCCGTGGTCA CTACACTATCGGTAAAGAGATCGTTGATCTCTGCCTTGACAGGATCCGCAAGCTCGCTGATAACTGCACCGGGCTTCAGG GATTCTTGGTGTTCAACGCTGTTGGTGGTGGTACCGGTTCTGGTCTCGGATCTCTTCTTCTGGAGCGTCTCTCTGTTGAT TACGGCAAGAAATCGAAGCTAGGGTTTACTGTTTACCCTTCCCCTCAGGTTTCTACATCAGTTGTTGAACCTTACAACAG CGTCCTTTCAACTCACTCCCTCCTGGAGCACACCGATGTCGCTGTGCTTCTTGATAATGAAGCCATCTATGACATTTGCA GGCGCTCCCTTGACATCGAGCGTCCTACATACACCAACCTCAACCGTCTTGTTTCTCAGGTGATTTCATCTCTCACTGCC TCTTTGAGGTTTGATGGAGCATTGAATGTTGATGTGACTGAGTTCCAAACCAACTTGGTTCCATACCCCAGGATCCATTT CATGCTTTCCTCATACGCCCCTGTGATCTCTGCTGAGAAGGCATACCATGAGCAACTCTCCGTTGCTGAGATCACCAACA GCGCCTTCGAGCCGTCTTCCATGATGGCCAAGTGTGACCCTCGCCATGGAAAGTACATGGCATGCTGTTTGATGTACCGT GGTGATGTTGTTCCCAAGGATGTGAATGCTGCTGTTGCCACCATCAAGACCAAGCGCACCATCCAGTTTGTTGATTGGTG CCCAACTGGGTTCAAGTGCGGTATCAACTACCAGCCACCAACTGTTGTTCCTGGTGGTGATCTTGCTAAGGTGCAGAGGG CTGTGTGCATGATCTCTAACTCCACCAGTGTTGCTGAGAGGGTGAATTCTCAGAGGCTCGTGAGGATCTTGCTGCTTTGG AGAAGGACTATGAGGAGGTGGGTGCTGAGTCCGGTGATGGAGAGGATGTTGACGAAAAAATTATGTTTGTTTGCTTTATC GTGA
Protein sequence (LotjaGi1g1v0412500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRT GAYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVD YGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTA SLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYR GDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAERVNSQRLVRILLLW RRTMRRWVLSPVMERMLTKKLCLFALS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 414 | 414 | 7.9E-270 | – | |
| SUPERFAMILY | 1 | 244 | 244 | 1.83E-97 | ||
| Gene3D | 1 | 268 | 268 | 9.0E-129 | ||
| PANTHER | 1 | 414 | 414 | 7.9E-270 | ||
| CDD | 2 | 386 | 385 | 0.0 | – | |
| Pfam | 3 | 213 | 211 | 2.0E-67 | ||
| PRINTS | 10 | 30 | 21 | 1.2E-77 | ||
| PRINTS | 18 | 33 | 16 | 3.3E-101 | ||
| PRINTS | 45 | 58 | 14 | 3.3E-101 | ||
| SMART | 49 | 246 | 198 | 1.6E-71 | ||
| PRINTS | 53 | 72 | 20 | 1.2E-77 | ||
| PRINTS | 88 | 101 | 14 | 3.3E-101 | ||
| PRINTS | 95 | 106 | 12 | 1.2E-77 | ||
| PRINTS | 108 | 132 | 25 | 1.2E-77 | ||
| PRINTS | 120 | 128 | 9 | 3.3E-101 | ||
| PRINTS | 134 | 152 | 19 | 1.2E-77 | ||
| ProSitePatterns | 142 | 148 | 7 | - | ||
| PRINTS | 148 | 160 | 13 | 3.3E-101 | ||
| PRINTS | 153 | 174 | 22 | 1.2E-77 | ||
| PRINTS | 161 | 172 | 12 | 3.3E-101 | ||
| PRINTS | 178 | 191 | 14 | 1.2E-77 | ||
| PRINTS | 192 | 212 | 21 | 1.2E-77 | ||
| PRINTS | 214 | 226 | 13 | 3.3E-101 | ||
| SUPERFAMILY | 246 | 389 | 144 | 2.84E-59 | ||
| SMART | 248 | 393 | 146 | 5.5E-51 | ||
| Pfam | 263 | 387 | 125 | 2.5E-48 | ||
| Gene3D | 269 | 383 | 115 | 4.6E-65 | ||
| PRINTS | 274 | 289 | 16 | 3.3E-101 | ||
| PRINTS | 321 | 342 | 22 | 3.3E-101 | ||
| PRINTS | 347 | 360 | 14 | 3.3E-101 | ||
| PRINTS | 360 | 379 | 20 | 3.3E-101 | ||
| PRINTS | 380 | 408 | 29 | 1.2E-77 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTPase activity | Catalysis of the reaction: GTP + H2O = GDP + phosphate. | ||
| Molecular function | Structural constituent of cytoskeleton | The action of a molecule that contributes to the structural integrity of a cytoskeletal structure. | ||
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. | ||
| Cellular component | Microtubule | Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle. | ||
| Biological process | Microtubule-based process | Any cellular process that depends upon or alters the microtubule cytoskeleton, that part of the cytoskeleton comprising microtubules and their associated proteins. |
Expression pattern of LotjaGi1g1v0412500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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