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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR037103
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We have found 42 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 8.228s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
LotjaGi1g1v0042300.1
n.a. Tubulin beta chain; TAIR: AT3G61650.1 gamma-tubulin; Swiss-Prot: sp|P38557|TBG1_ARATH Tubulin gamma-1 chain; TrEMBL-Plants: tr|G7L416|G7L416_MEDTR Tubulin gamma chain; Found in the gene: LotjaGi1g1v0042300 LjG1.1_chr1 5815073 5820824 +
2 domain predictions
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LotjaGi1g1v0042300.2
n.a. Tubulin beta chain; TAIR: AT3G61650.1 gamma-tubulin; Swiss-Prot: sp|P38557|TBG1_ARATH Tubulin gamma-1 chain; TrEMBL-Plants: tr|G7L416|G7L416_MEDTR Tubulin gamma chain; Found in the gene: LotjaGi1g1v0042300 LjG1.1_chr1 5815555 5820241 +
2 domain predictions
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LotjaGi1g1v0412500.1
n.a. Tubulin alpha chain; TAIR: AT1G04820.1 tubulin alpha-4 chain; Swiss-Prot: sp|P46259|TBA1_PEA Tubulin alpha-1 chain; TrEMBL-Plants: tr|A0A0L9UGJ9|A0A0L9UGJ9_PHAAN Tubulin alpha chain; Found in the gene: LotjaGi1g1v0412500 LjG1.1_chr1 90374350 90376623 -
2 domain predictions
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LotjaGi1g1v0412500.2
n.a. Tubulin alpha chain; TAIR: AT4G14960.1 Tubulin/FtsZ family protein; Swiss-Prot: sp|Q6VAG0|TBA2_GOSHI Tubulin alpha-2 chain; TrEMBL-Plants: tr|W9QUC8|W9QUC8_9ROSA Tubulin alpha chain; Found in the gene: LotjaGi1g1v0412500 LjG1.1_chr1 90374628 90376319 -
2 domain predictions
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LotjaGi1g1v0545200.1
n.a. Tubulin beta chain; TAIR: AT3G61650.1 gamma-tubulin; Swiss-Prot: sp|P38557|TBG1_ARATH Tubulin gamma-1 chain; TrEMBL-Plants: tr|G7L416|G7L416_MEDTR Tubulin gamma chain; Found in the gene: LotjaGi1g1v0545200 LjG1.1_chr1 107452913 107459849 -
2 domain predictions
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LotjaGi1g1v0545200.2
n.a. Tubulin beta chain; TAIR: AT3G61650.1 gamma-tubulin; Swiss-Prot: sp|P38557|TBG1_ARATH Tubulin gamma-1 chain; TrEMBL-Plants: tr|G7L416|G7L416_MEDTR Tubulin gamma chain; Found in the gene: LotjaGi1g1v0545200 LjG1.1_chr1 107453921 107459496 -
2 domain predictions
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LotjaGi1g1v0643600.1
n.a. Tubulin alpha chain; TAIR: AT5G19770.1 tubulin alpha-3; Swiss-Prot: sp|O22349|TBA3_ELEIN Tubulin alpha-3 chain; TrEMBL-Plants: tr|I1ML11|I1ML11_SOYBN Tubulin alpha chain; Found in the gene: LotjaGi1g1v0643600 LjG1.1_chr1 120093672 120103499 +
2 domain predictions
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LotjaGi1g1v0643600.2
n.a. Tubulin alpha chain; TAIR: AT5G19770.1 tubulin alpha-3; Swiss-Prot: sp|O22349|TBA3_ELEIN Tubulin alpha-3 chain; TrEMBL-Plants: tr|I1ML11|I1ML11_SOYBN Tubulin alpha chain; Found in the gene: LotjaGi1g1v0643600 LjG1.1_chr1 120093672 120103914 +
2 domain predictions
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LotjaGi1g1v0659300.1
n.a. Tubulin beta chain; TAIR: AT5G12250.1 beta-6 tubulin; Swiss-Prot: sp|P29514|TBB6_ARATH Tubulin beta-6 chain; TrEMBL-Plants: tr|G7L5V0|G7L5V0_MEDTR Tubulin beta chain; Found in the gene: LotjaGi1g1v0659300 LjG1.1_chr1 122037270 122040624 +
2 domain predictions
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LotjaGi1g1v0659300.3
n.a. Tubulin beta chain; TAIR: AT5G12250.1 beta-6 tubulin; Swiss-Prot: sp|P29514|TBB6_ARATH Tubulin beta-6 chain; TrEMBL-Plants: tr|G7L5V0|G7L5V0_MEDTR Tubulin beta chain; Found in the gene: LotjaGi1g1v0659300 LjG1.1_chr1 122037789 122040099 +
2 domain predictions
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LotjaGi1g1v0659300.4
n.a. Tubulin beta chain; TAIR: AT5G12250.1 beta-6 tubulin; Swiss-Prot: sp|P29514|TBB6_ARATH Tubulin beta-6 chain; TrEMBL-Plants: tr|G7L5V0|G7L5V0_MEDTR Tubulin beta chain; Found in the gene: LotjaGi1g1v0659300 LjG1.1_chr1 122037789 122040169 +
2 domain predictions
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LotjaGi1g1v0676200.1
n.a. Cell division FtsZ-like protein; TAIR: AT3G52750.1 Tubulin/FtsZ family protein; Swiss-Prot: sp|Q9LXJ0|FTZ22_ARATH Cell division protein FtsZ homolog 2-2, chloroplastic; TrEMBL-Plants: tr|I1NAM9|I1NAM9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0676200 LjG1.1_chr1 124302538 124309275 -
2 domain predictions
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LotjaGi1g1v0676200.2
n.a. Cell division FtsZ-like protein; TAIR: AT3G52750.1 Tubulin/FtsZ family protein; Swiss-Prot: sp|Q9LXJ0|FTZ22_ARATH Cell division protein FtsZ homolog 2-2, chloroplastic; TrEMBL-Plants: tr|I1NAM9|I1NAM9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0676200 LjG1.1_chr1 124303033 124308611 -
2 domain predictions
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LotjaGi1g1v0676200.3
n.a. Cell division FtsZ-like protein; TAIR: AT3G52750.1 Tubulin/FtsZ family protein; Swiss-Prot: sp|Q9LXJ0|FTZ22_ARATH Cell division protein FtsZ homolog 2-2, chloroplastic; TrEMBL-Plants: tr|I1NAM9|I1NAM9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0676200 LjG1.1_chr1 124303033 124308632 -
2 domain predictions
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LotjaGi2g1v0107000.1
n.a. Tubulin alpha chain; TAIR: AT5G19770.1 tubulin alpha-3; Swiss-Prot: sp|P28752|TBA1_ORYSJ Tubulin alpha-1 chain; TrEMBL-Plants: tr|A0A0L9VLH4|A0A0L9VLH4_PHAAN Tubulin alpha chain; Found in the gene: LotjaGi2g1v0107000 LjG1.1_chr2 36442927 36447872 +
2 domain predictions
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LotjaGi2g1v0107000.2
n.a. Tubulin alpha chain; TAIR: AT5G19770.1 tubulin alpha-3; Swiss-Prot: sp|Q56WH1|TBA3_ARATH Tubulin alpha-3 chain; TrEMBL-Plants: tr|A0A0L9VLH4|A0A0L9VLH4_PHAAN Tubulin alpha chain; Found in the gene: LotjaGi2g1v0107000 LjG1.1_chr2 36443124 36447569 +
2 domain predictions
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LotjaGi2g1v0107000.3
n.a. Tubulin alpha chain; TAIR: AT5G19770.1 tubulin alpha-3; Swiss-Prot: sp|Q56WH1|TBA3_ARATH Tubulin alpha-3 chain; TrEMBL-Plants: tr|A0A0L9VLH4|A0A0L9VLH4_PHAAN Tubulin alpha chain; Found in the gene: LotjaGi2g1v0107000 LjG1.1_chr2 36443124 36447592 +
2 domain predictions
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LotjaGi3g1v0217800.1
n.a. Tubulin beta chain; TAIR: AT5G62690.1 tubulin beta chain 2; Swiss-Prot: sp|P12460|TBB2_SOYBN Tubulin beta-2 chain; TrEMBL-Plants: tr|I1JLU8|I1JLU8_SOYBN Tubulin beta chain; Found in the gene: LotjaGi3g1v0217800 LjG1.1_chr3 32851086 32854371 +
2 domain predictions
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LotjaGi3g1v0217800.2
n.a. Tubulin beta chain; TAIR: AT5G62690.1 tubulin beta chain 2; Swiss-Prot: sp|P12460|TBB2_SOYBN Tubulin beta-2 chain; TrEMBL-Plants: tr|I1JLU8|I1JLU8_SOYBN Tubulin beta chain; Found in the gene: LotjaGi3g1v0217800 LjG1.1_chr3 32851189 32853424 +
2 domain predictions
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LotjaGi3g1v0217800.4
n.a. Tubulin beta chain; TAIR: AT5G23860.1 tubulin beta 8; Swiss-Prot: sp|P12460|TBB2_SOYBN Tubulin beta-2 chain; TrEMBL-Plants: tr|I1JLU8|I1JLU8_SOYBN Tubulin beta chain; Found in the gene: LotjaGi3g1v0217800 LjG1.1_chr3 32851354 32853429 +
2 domain predictions
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LotjaGi4g1v0026900.1
n.a. Tubulin beta chain; TAIR: AT2G29550.1 tubulin beta-7 chain; Swiss-Prot: sp|Q9ZPP0|TBB1_ELEIN Tubulin beta-1 chain; TrEMBL-Plants: tr|A0A067GIJ4|A0A067GIJ4_CITSI Tubulin beta chain; Found in the gene: LotjaGi4g1v0026900 LjG1.1_chr4 3263112 3274563 +
2 domain predictions
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LotjaGi4g1v0026900.2
n.a. Tubulin beta chain; TAIR: AT2G29550.1 tubulin beta-7 chain; Swiss-Prot: sp|Q9ZPP0|TBB1_ELEIN Tubulin beta-1 chain; TrEMBL-Plants: tr|A0A067GIJ4|A0A067GIJ4_CITSI Tubulin beta chain; Found in the gene: LotjaGi4g1v0026900 LjG1.1_chr4 3271566 3274099 +
2 domain predictions
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LotjaGi4g1v0026900.3
n.a. Tubulin beta chain; TAIR: AT2G29550.1 tubulin beta-7 chain; Swiss-Prot: sp|Q9ZPP0|TBB1_ELEIN Tubulin beta-1 chain; TrEMBL-Plants: tr|A0A067GIJ4|A0A067GIJ4_CITSI Tubulin beta chain; Found in the gene: LotjaGi4g1v0026900 LjG1.1_chr4 3271653 3274125 +
2 domain predictions
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LotjaGi4g1v0026900.4
n.a. Tubulin beta chain; TAIR: AT2G29550.1 tubulin beta-7 chain; Swiss-Prot: sp|Q9ZPP0|TBB1_ELEIN Tubulin beta-1 chain; TrEMBL-Plants: tr|A0A067GIJ4|A0A067GIJ4_CITSI Tubulin beta chain; Found in the gene: LotjaGi4g1v0026900 LjG1.1_chr4 3271653 3274211 +
2 domain predictions
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LotjaGi4g1v0026900.5
n.a. Tubulin beta chain; TAIR: AT2G29550.1 tubulin beta-7 chain; Swiss-Prot: sp|Q9ZPP0|TBB1_ELEIN Tubulin beta-1 chain; TrEMBL-Plants: tr|A0A067GIJ4|A0A067GIJ4_CITSI Tubulin beta chain; Found in the gene: LotjaGi4g1v0026900 LjG1.1_chr4 3271653 3274356 +
2 domain predictions
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LotjaGi4g1v0066200.1
n.a. 50S ribosomal protein L34; TAIR: AT1G29040.1 50S ribosomal protein L34; Swiss-Prot: sp|P80698|TIG_BACSU Trigger factor; TrEMBL-Plants: tr|I3SIF1|I3SIF1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0066200 LjG1.1_chr4 8314590 8317899 +
2 domain predictions
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LotjaGi4g1v0376700.1
n.a. Tubulin alpha chain; TAIR: AT5G19770.1 tubulin alpha-3; Swiss-Prot: sp|Q56WH1|TBA3_ARATH Tubulin alpha-3 chain; TrEMBL-Plants: tr|A0A151TKV5|A0A151TKV5_CAJCA Tubulin alpha chain; Found in the gene: LotjaGi4g1v0376700 LjG1.1_chr4 75572446 75577096 -
2 domain predictions
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LotjaGi4g1v0376700.2
n.a. Tubulin alpha chain; TAIR: AT5G19770.1 tubulin alpha-3; Swiss-Prot: sp|Q56WH1|TBA3_ARATH Tubulin alpha-3 chain; TrEMBL-Plants: tr|A0A151TKV5|A0A151TKV5_CAJCA Tubulin alpha chain; Found in the gene: LotjaGi4g1v0376700 LjG1.1_chr4 75574437 75576607 -
2 domain predictions
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LotjaGi4g1v0376700.3
n.a. Tubulin alpha chain; TAIR: AT5G19770.1 tubulin alpha-3; Swiss-Prot: sp|Q56WH1|TBA3_ARATH Tubulin alpha-3 chain; TrEMBL-Plants: tr|A0A151TKV5|A0A151TKV5_CAJCA Tubulin alpha chain; Found in the gene: LotjaGi4g1v0376700 LjG1.1_chr4 75574447 75576607 -
2 domain predictions
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LotjaGi4g1v0376700.4
n.a. Tubulin alpha chain; TAIR: AT5G19770.1 tubulin alpha-3; Swiss-Prot: sp|Q56WH1|TBA3_ARATH Tubulin alpha-3 chain; TrEMBL-Plants: tr|A0A151TKV5|A0A151TKV5_CAJCA Tubulin alpha chain; Found in the gene: LotjaGi4g1v0376700 LjG1.1_chr4 75574456 75576607 -
2 domain predictions
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LotjaGi4g1v0425600.1
n.a. Tubulin beta chain; TAIR: AT5G12250.1 beta-6 tubulin; Swiss-Prot: sp|P12459|TBB1_SOYBN Tubulin beta-1 chain; TrEMBL-Plants: tr|A0A1J7HE29|A0A1J7HE29_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0425600 LjG1.1_chr4 80037806 80040705 -
2 domain predictions
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LotjaGi4g1v0425600.2
n.a. Tubulin beta chain; TAIR: AT5G12250.1 beta-6 tubulin; Swiss-Prot: sp|P12459|TBB1_SOYBN Tubulin beta-1 chain; TrEMBL-Plants: tr|A0A1J7HE29|A0A1J7HE29_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0425600 LjG1.1_chr4 80037842 80040705 -
2 domain predictions
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LotjaGi4g1v0425600.3
n.a. Tubulin beta chain; TAIR: AT5G12250.1 beta-6 tubulin; Swiss-Prot: sp|P12459|TBB1_SOYBN Tubulin beta-1 chain; TrEMBL-Plants: tr|A0A1J7HE29|A0A1J7HE29_LUPAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0425600 LjG1.1_chr4 80037842 80040854 -
2 domain predictions
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LotjaGi4g1v0464300.1
n.a. Tubulin beta chain; TAIR: AT5G12250.1 beta-6 tubulin; Swiss-Prot: sp|P18025|TBB1_MAIZE Tubulin beta-1 chain; TrEMBL-Plants: tr|A0A151TK69|A0A151TK69_CAJCA Tubulin beta chain; Found in the gene: LotjaGi4g1v0464300 LjG1.1_chr4 83433826 83435447 +
2 domain predictions
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LotjaGi4g1v0464300.2
n.a. Tubulin beta chain; TAIR: AT5G12250.1 beta-6 tubulin; Swiss-Prot: sp|P18025|TBB1_MAIZE Tubulin beta-1 chain; TrEMBL-Plants: tr|A0A151TK69|A0A151TK69_CAJCA Tubulin beta chain; Found in the gene: LotjaGi4g1v0464300 LjG1.1_chr4 83433914 83435494 +
2 domain predictions
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LotjaGi5g1v0005400.1
n.a. Tubulin beta chain; TAIR: AT1G20010.1 tubulin beta-5 chain; Swiss-Prot: sp|P18025|TBB1_MAIZE Tubulin beta-1 chain; TrEMBL-Plants: tr|A0A0S3RAJ6|A0A0S3RAJ6_PHAAN Tubulin beta chain; Found in the gene: LotjaGi5g1v0005400 LjG1.1_chr5 1429364 1432800 +
2 domain predictions
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LotjaGi5g1v0300100.1
n.a. Tubulin beta chain; TAIR: AT5G23860.1 tubulin beta 8; Swiss-Prot: sp|P37392|TBB1_LUPAL Tubulin beta-1 chain; TrEMBL-Plants: tr|A0A058ZXC7|A0A058ZXC7_EUCGR Tubulin beta chain; Found in the gene: LotjaGi5g1v0300100 LjG1.1_chr5 61735160 61739805 -
2 domain predictions
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LotjaGi5g1v0300100.2
n.a. Tubulin beta chain; TAIR: AT5G23860.1 tubulin beta 8; Swiss-Prot: sp|P37392|TBB1_LUPAL Tubulin beta-1 chain; TrEMBL-Plants: tr|A0A058ZXC7|A0A058ZXC7_EUCGR Tubulin beta chain; Found in the gene: LotjaGi5g1v0300100 LjG1.1_chr5 61737527 61739628 -
2 domain predictions
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LotjaGi5g1v0300100.3
n.a. Tubulin beta chain; TAIR: AT5G23860.1 tubulin beta 8; Swiss-Prot: sp|Q40106|TBB2_LUPAL Tubulin beta-2 chain; TrEMBL-Plants: tr|M5WZG9|M5WZG9_PRUPE Tubulin beta chain; Found in the gene: LotjaGi5g1v0300100 LjG1.1_chr5 61737641 61739628 -
2 domain predictions
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LotjaGi5g1v0319800.1
n.a. Tubulin alpha chain; TAIR: AT1G04820.1 tubulin alpha-4 chain; Swiss-Prot: sp|Q6VAF9|TBA4_GOSHI Tubulin alpha-4 chain; TrEMBL-Plants: tr|A0A1J7FT38|A0A1J7FT38_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0319800 LjG1.1_chr5 63706086 63710038 -
2 domain predictions
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LotjaGi6g1v0268300.1
n.a. Tubulin beta chain; TAIR: AT5G23860.1 tubulin beta 8; Swiss-Prot: sp|Q40665|TBB3_ORYSJ Tubulin beta-3 chain; TrEMBL-Plants: tr|C5NU06|C5NU06_LOTJA Tubulin beta chain; Found in the gene: LotjaGi6g1v0268300 LjG1.1_chr6 58330571 58333802 +
2 domain predictions
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LotjaGi6g1v0268300.2
n.a. Tubulin beta chain; TAIR: AT5G23860.1 tubulin beta 8; Swiss-Prot: sp|Q40665|TBB3_ORYSJ Tubulin beta-3 chain; TrEMBL-Plants: tr|C5NU06|C5NU06_LOTJA Tubulin beta chain; Found in the gene: LotjaGi6g1v0268300 LjG1.1_chr6 58330866 58333177 +
2 domain predictions
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