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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0416600 |
| Transcript ID | LotjaGi1g1v0416600.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | AP-1 complex subunit sigma-like protein; TAIR: AT3G50860.1 Clathrin adaptor complex small chain family protein; Swiss-Prot: sp|Q8VZ37|AP3S_ARATH AP-3 complex subunit sigma; TrEMBL-Plants: tr|A0A151SEJ3|A0A151SEJ3_CAJCA AP-3 complex subunit sigma-2; Found in the gene: LotjaGi1g1v0416600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:90995490..91004486) extracted from Lotus japonicus Gifu genome v1.2.
CCCACAGCAAGTCCAGGGGGTTCAGTTGAACCCCCTGAAGAAAAAAAAAATTCAACTTACCCCCTTATAATATTTGTTTT TTGAACCCCCTGAGTTTTTAGATTTGCACCCAGACCCTCCACTTACTCCTCTCTCACACTCACATACTCTGCCTTGCCTC TGATACTCACGACTCACGCTCTCAAGTCTCACTCTCACGAATCAATTCACGCTCACCAACCAGTCAGTCACCACGCCCAG ACGACGCCCTCACCCTCTCCGCCTCTCGCACCCTCATCACGGCACGGCGACACCACCACCGACCACCACCACGCCACGCC TCGCCTTCCCTTCCCTTCGTATGCAGGTATTTTGTTTTGTTTCTTCTTGGGTTCTTGTAGATGCGTGAATCGTGATTGTC TGATTGTCAATTGAGAAGGGAAGGAGCGGAGGCTAGGATTTTCTTCAGATGGTGAATATCTGAAGAATGAGAAATATTTT TCTGAAACCCTAGGTTTCAAAATTGGGGGAAATTGATTTTTCTTTCCTGTGGCTAGTTAATGTTTCCAACTCTTCATATA GCTATGCGTTTTGGAGACAAGATATTGTTGGTTAGTTTTGGAGACAATGGTCCTATGCGTTTTGGAAATTGTTGGTTAGT TTTATTGCTGTACATAATAATTCTCACAGATTATAGTAGTATTGGAGACCATTTGTCACGTTTTAGATGAAGGGGATTGG TCTTAAATCTGAAAATCTGTTTGTTCTTCTATTAATCAAAATGACCTTAATAAGTTGCTGAAATATTCAGAACAATTCTT CTATTTAATCACATATATCCTCTTGTTGAGTAGTTAGCTATGTAGCCTATAGTCTATATCACCTCACTGAGCTGAATCAT TCTTTTGATTTAATTACTGAATATCACATGCTACCTCTGGTAACCTGGTTACACAACTTGTAAGTATGGATGATTGATGA AAATCAGAATTAGAGGGTGAAACAAGAGAATCAGGAAACAGTGGAGGCATGGCTTTGGTGTTACAATTATAAGTGGGAGA TGATTTGGCAAATATTTTTTCTTGGATATGTACATCTGTATTATCATCTTTGTGTTTATACTGGATATGGTTGGGCAAAG TCATTATAAATAGAAAAATAGAACCCGACGCGGTCTAATCCCCGGGACGGACCCCAACCGAAAGAAAGGCGCTAGACGGA CTAACGGCAAGCGAGATAAAGAAAGCTGCTTTATCGTTGAAACTTTCAACTCTGTAGCTTGGCATTCCTATTCTTATTAG TATATTTCTTTTGGCCTTTTCAAAAAAAATGTATATCAACTCTGTAATTGCAGTTTTAGCTATTTTCCTCTGTTGTGTGT TTGCAGCCTTGCTGCTGCTTTGTACCTCTCCCTCTGTGTCTTATTTTTTCTTTGTTGCTTACTTGTAATCTTTGGGATGG CACCCCTTGTGCCTTTTTATTATATCATTGGCTTACAAAAAAAAAGCTGGATATGTCTATTTTTTTCCCTATTTTTTTTC CCTAATTCTTGTTGTGTGAAGCTTGATTTCCCAAATTCATGAGATATATTAAGAATTATAATTATGGTCTGTTTTTATTT TTAATTATATTTTTATCGATATGCTTATTTGAAAAATTTGAACCCCCTGACCTTGGGGTCCTGGATCCGCCACTGGCGAT GACTGTAGTGGTGGTTGCGGTGCAGGGAGGTGATTGTGGTGGTGATGGTGGTGGCTTCTGGCGGTATGTAGTGGTAGTGA CGATGACAATGACAATGGTGGCGGCGGTGGAATGTGGTGATGATGGTGGTGGCAGCGGTAGCAGTGGTGATAGCGATGGC GACATCGACATTTGGGGGTGGAAGCAATCGTAGTGATGGTAGTAACCATCTTTTCTCTCTATTATACCAAAACAACCTAC AAAATACACTACTTTTCACTTTTTTATCTACTCATCTTCTATCTTCTCTTTCGTATGCTTCTCTATTTTTGTCGTAAAAC CAAATAGAGCATTTAAGTAATGTGAATTTTTTTTTTTTGGTAAGACACGTGTCCTCTTTCGGGCCGGAACATTCATATCA TGGTGGGGTTAACTCTTCCAACGGGGTGTTTCAAACACAAGACTCGAGCCCCGAAACCTTACTTAAGGAGAATCAAACAT GTACTACTTGAACCAATCACACGTTAAATAATGTGATTTCAATGCTCAAGACCCGTTATGAGAATATTTTGTTAAAAAAA ATGCTTTGATGGCAGAGTTGCTAACTCCTCAGTCCTCACACATTTGAGAAAACGCTGCGTTTCGAAAATTGCAGTGCTAA TCCTTCTTCGCCCATCGGCGATCGATCTGATCGGAGACTCTTCTCCGGAGCGGTTAAACTGGTGCGTCCTGTTCAATTTC GCCTTCCTTTTCTCCATCTCAGCACAGTGTTCTTCATCTGTTTCCCTCTTCGCCTGTGTTTTCTCGATCAGTGATACAAG CTTGTGATATATGAAGTGAATTTGAATTGTGATTTTGTTATCGACAGAGAAACCCAAAATGATAAGGGCAGTGCTGGTTC TGAACACGCAGGGGAAGCCTCGTCTCTCCAAATTCTATGAATATCAGGTCCCTCTCTCTTCAAACTTCAAATCTTTCGCA TATGGGATGCAATTTTCACACTGTGTGTTTTATGTTGTGGTAGCTCAGCCAGTGGAGAAGCAGCAGCAACTTATTCGCAA TGTCTTTGCTGGTTTCTCTTCCTAATCTCTGGACTCCATGAACTTTTGTTTGTGTGTGTTTGATTTTCTGTTCTATGTTG CCTATGTTTGTCAACTTTGTTTATTTTTCTTGCAGTCTTATGCAGTAGACCTGAACATGTCAGCAATTTTGTGGATGCCG AGTCCTTCTTTGGCCCGGTATTTTATCCTTCCATGTTCAACTTGCTGTAGTTTTGATCATAATGTATGTACTCTAGTTGT TAAAAGAGTAATTTATAAAAAAGAATGTTGTAATTGCCTTATTGGGTTTTTTTTCTTGGCATTGTTTTTTGGTGGTGTAA TATATGTGAAAAGGAATTTATGGTATTGATTTAAGTTGGCATGTGGTGAAAAGAGGTCGAGCTAGAGCTCAGTTACCACG AACTTGCTTTTAAACTAAAGTATGAAAGACTACTATGAATATAGTTGCGAGGGTACACTTTGTTTAGAATTGGAGACTCG CTATTAAGACCAATGGGTGGTTGCCTGATTGGTTCAAGTGGTACATGCTTGATTCCCCTTAAGCAAGGTCTTGGGTTTGA GTTATGTGAATGGACAAGACTCTTGCTGGCAGAGCTAGCCCCACTATGATATGGATGTTCCTGGCACAAACAGGGTTGTT CTCGTGGAGGATAGCTGTATTAAGCCAAAAAAAAAAGGCTCGCTGTTAGGTCTATTGTTGATTTCATATTGTGGATATAG TGGTTTTACTCTTCTATTGTTATGATAGGCAGCTAGTGCTGTGTTGTTATCTTTTTTTGACTGCCTGTCTTCGTTGGGTC AAACTTTAGCTTCTTCATCTTATTTATCTGAAAAAATAAGTTATGGATTCATTTGTTGTATTCTTCTTCAGGATGCTCGC CTTGTCTACAAGCACTTTGCAACTTTGTACTTTGTGTTTATTTTTGATAGTTCTGAAAACGAGCTTGCCATGCTTGACTT GATACAAGGTAGGTTCCTAAACAACTGTCCATTTATTGGAAATTGTCGGTATTACGTAAATATTTTATTGCATCGCATGA AGTATGGAAATCTAGAAGATCTGTTTATTTTTTTTACTGATGTAATTCAATATTGTAGGGTAAGACAGCAAAAGAAGGTG GCTTCTAGAAGTCATAACCTATTTAGGTTTTAGAACCTCGTAGGTCTGAAGTCATAACCTATTTAATACTTGGAAACTTA ATAGCAAGTATAATAACAAAACTTGGATGACAAGAAAGAAACTCTTAAAGTATTTTCCTAGCTCATATAATGTGCTTCTT GGACTTTAATCCTACCATTATCATCCCTAAACTAACTGAAACAATTAATTAAAATTTCTAAAATTCTTCCCTGCAAAAGT TACGTAAAAAATAAAATGATACGTAAGGGAGCCCTGTTTTAACTTTTAACAGTTGAAAGTCACCATGGGACCTAAAAGTC ATAGGTATGAGTTGTGGAAGTAAATTTTTTGCAAATGCCCTGCCTACTATAGATTTACATAGTGGGTTTAACGTCTTCCC AGACCCCACTCATAGCAGGAGCTTTATAGCACCAAGATGCCATTTATATGATGGACACCCCCCTATTTTACACTCACAAA ATGATTATAAGTTGTGTAAAGCACAAAAAGGTGAAACTTTGCTACATACAATCTATAGAACCTTTAAGTTTAGGAGGTTA AAAAGTGTCGACAGCATCCTGTTGTTAACTGACAATTTTAGCAATGATCAAAACTCAAACGGTATGATCAAGTGTACAGG TTAATCTGATTAAAAGAGCATTTGATGTTGATACTTTATTGATCATTCCGTTCTTTGGTAGAACTTAATGATGATATTTG ATCCATGTATGTAGAGGACCACACATCAGAGGATATGGCTTAGTTATCGTTTACACTATAAGCAGGTGAAAAAATATTCC TGTGCAATAGTTTAATTCTAGATTTTTGAAGGAATAAAAGGAATCTTATACAAGTTGTTAGTTCTCGCTGATACATATAT TGGAAAATGATGTAAAATCTAATGACAAATCGGCACAAAACCTCCCTTTTTGAAAAGCCTTTAGTTGAATTATTATTTGA GCCAAATGTTTTTGAGATCATTTTAAATTTGTCACATTTTGAACTCCATTGTTCTCAGAATTTCCATTGAAGGTAAATGG TTTTAATGATCTATTTAACCATAAAACAGTCATTTGTTTAGATATCTAAACTCTATTGCATATTATGCTAAGGATCCTGG TGGAATAAGTATTTGCTTTATGTATTATCCATTATATTCTGCCTGACGATTATACAGCTATTCTAACCAGTTTAATTACT GCCTCATACGTGATTGTTTATTATGGGCAATTTGCTTACTTTGTGCCTTTCTTCCTTCAGTCTTAGTTGAAACGCTGGAC AAATGCTTCAGAAATGTTTGTGAGCTTGATGTCGTGTTCAACTATAGCAAGGTTGTATGCTGTGTGCCCTCCATTATGAA TTCTTAGCACAAACTGACTATATAACAATTTACTATATTGCAAGAAATGAATTAGAAACTGAATTATTATTGAGGGAAAA CATTTTCTTCTGTGTATGGAGATTTGCTAGAGTTTGCTGCAACCTGCGAGTTTTGCTGATTAGATTTCGAACATGAAGTG TTTGACTTAAGTTGTTCCGCTTTACTCAAAAAAAAATTGACGATTCAGTTAAACATTTATTTTTCACTCATTTTGGGTTG CTTTGAAAAATTGTCCTTCAGTTTAGGGAAAATGAATTACTCTTTTGCTCAGTAGCTCGATAGTGTCAATACCTAGAACC AAGCATCTTAAGTTTCCATTTTTATGTGATCCTGAAAAATGAGTTTGTCTGCAGATACATACTATACTAGATGAGATTAT TTTCGGAGGCCAGGTGTTGGAGACAAGTTCAACTGAAGTTTTGAAGGCTATTGAAGAAATATCAAAGTGCTCTCTCTCTC CTCTTGTTTTTAACATGGTTTTACTTTTTTGCATTATCATGGTCAATAAGAAAGCCCTACGTTCTGGTAAACTAGTAACC AGGGTTTTTTCACTCAGTATAAAAGCTCAACCGTTTTATTATGCAGATGGAATGATATGATGAATCAAAATTGTTTTTTA CATTTACATTTTGTGGAGAATAGGTTCTAATCAAAATTGTATATTTTTTAAATTTAATGCAGGCTTGAAGCAGCATCCAA TACCATGAATCTTGTTTCAAAATCTGTTTCAAATTGGAGGTCCCGGTAGTCTAATTTCATGCGGAAGGATCTGCTCTCCC ACATGCGAGGGGTTTGAGATGTGAAATGAAGTGTCTTTGATGAGGGAACTGGGAAGTCAGTTAGATGCATTTTTCTTCTG ATGTAGGTGCTTCTTATTGAAGCATTGAAGCAATGAATGACACCCCGAATAAGATTTCATTTAACGTAGGGGCTTCAAGA AACAATTTTCAACTTCTCTGACCACACATTGTTCCCAACAGATACCAATTTTGGTCAATCAATTTGATTGCATTGACTTG AAATGTTTACATTGTATAAATACATTCTTACACATTGTAATTAACTTATGAGCTTTTATCCTGTACCAAACAGGAACTGC TAGAATCAATGCATTGACCAATTGCTAGATTGTCAAGGAATTACAAGTTCTAGTTTTCTGAAATCCAAATTGTACCATCT GCAAGTTTGTTATGCAAATGTTCAGCATATTTGGTAAACCATTATCGCGATTCTTCCATCCAATGCACCATTAAAAGATT TGGAGAAGTTTCTGCATGTGATTCCACTGAAAGATCTATCTATCCAAGCCTGTATGCATTCGTTAACAACTTGGGCGAGA ACTACAATTGAGTATCACCACTTAAGTTGTTTTTCTAACATCTTGAAGAACTACATGAGCAGCATTGCGTCCAGGAGCTC CCATAACTCCACCGCCAGGATGTGCCCCACTTCCGCACAAGTATAACCCTTTAAGTGGAGTCTTGTAGTTTGACCTAAAC CCCATATCAATGTAAACAACCATGTAGATATCAGTTCTATGTCAGAAAACTAAACCAGATTAAATCACAGGCCACTTCAA ATTTATTTTACCATCCTTTTACAGGTCGCATGAGGAAAAGAGAATCCAATCCCATAGCACCATGAAATATATTCCCTCCT GAAAGAAAGAAAAAAACGGATCAAATGTTAATAGTGAAAATGAACTAGTGGTTTCAAGCAGAACATCAACTCATGTTAAG ATTCATCCATGTTTTCTTCGTTCTTTTTGTAACCTTTTGTTTAATGAACTTCTTTTATCGCCTAATAGGAAAAAAACAAC TTATTTTCTCAATTAATTTCAGGGTTTTGTGCCCTAGGAAAAGCCATTTAGCTTGTAAAAATATAAACTGCAAAGGTATT TGATTAAGTGAATAAGGCAAAGTGACCTGTCAAACCGATTTCCCTTTCAAGATCTGGAGGAGTCAGCATGTCATAACCAA TGATTGATGTGCTGAAGCCAGGGGCATATTCATCAATTAATGTGAAGCATTTTTGTGCAAATGATTCCTGAACAGAACAG GTGAGATATAACGAGGCACATTTAATATAAAGTATTCCACGACAAGTAGCTTTAGCACTAAGTGGCAACGAGCAAACACA AGTGCGTGACCATGGAAGAAAAAACAACTCTGGACATTGAAAAGCACAACAGAGGGTGAGAAAAAAAAAATCATGAAACT AGAACATCCAAAACAAACTTACTCTGTAGTCATGATCTTGCCAGTCACCGTCCAATGGTTTGTAGGGTGTATACTGCACA AACAGGTTGATCACATGCTTACCTATGAAGAAAACAGATTTCATCAACTAGATGTTTTTAACATATTTCAACTATTATGA AGGAATCAAATACAGATAAATTAACCAGATGACTGCTGAAACACAATCCATGTTTACAGTTACAGTCTGAGTTAAAGAAG TTCAATGGAACATTGAAAACAAAACAAAATCACTTAAAAATTGTTGAGAAATAAAATGAATATATGTAGAAAATGCATTG AAAGCAAAGTAGCTAAACTGCCTCTCATAAACAATATATCATCACATTCTTAAACGCAACATACCAGGCGGAGATATAGT TTTGTCCAGAACAGAGGGAATTGTCATCTCAATAACCGGTCTTCTTGATGGTACTCCATTCACCGCATCTTGACATGCAG AGTGAATCTCCTCCACGCTGAATAGAAATTAACAAGGGCAAAGAAAAATATAAGTACTCTGAAAATAAATAAGTTGCAAC GGTCCATATTGTATAAGACTACAGCAAAATGTACGTACTGACTAAACAGCATGATTTCACAATAGGTGAGATAATGATTC AATTTTAACATACCTCTCAGAACCTATATGAATGGTGCCAACATGCTGCGGGCCATCATGAGGATGATTTAGCTTGCAAC ATTGAAATTGGGGCAATTTATCAACTGCTATATTTATTTTTGTAGTAGCCTGTTTCAGTAGATATTAACAAATCAAAGAA AGGCAATTAATGAAGACAAAAACACTAAAAAAACTTCCTCAAAATCTATCATAATTTCCATAATTTTGAGAAAGAAAAGG GGGAGAAAACCCTATTGTGCCAAATCAAAATTTGTCTTTGCCAGGTATTTTGCTTGATAGTTGCAGCGGCTAGCATAGAA CTTTATCCCTGTTCTAGCAACTGATTAATATTTGAAGTTTTTCTCAGAGATATGATTTCCCCGTGGATGAATTCTAGGCA TTCTTCCTCATTACCAGACAATAAAATAAAAGCACACTGTGTATGTTACCTATTATTTTAGTTCAGTAATACATGTACTA GAGATTGAGGGTATCAAAAAAGAAAAATAAATTGAGAAAAAAGTAGTGAATTAACTTACGGAACTGTAGTCAGAATGCTT AATTGCACGGACAAAATCATCAGGGAGGACATTGCTGGGAGCTAATTCCTGGCTCATATTGGCAGATACTTCAAATTAGC ACCAACACCAAATATAGGTACCAGAGAAGTGTATTTGCAGCTAGTTTGAGAATTTACCATGAAAGTTTTATACGGAGTCG CGTTAGACAGAATCACTGAAGAATGGACTTCAGTACCATCAGCCAAAATCACCTATATGTAAGCCATATCTTTAAAATTT AATTACTACGATCCACCTCTAAAAACCTTCTTGATTGAGTATACTCATGAACAACACTAACCCCACGGACAGTGCTAGAG TTTTCGATCAACAATTGAGACACCTACAATAATACAG
CDS sequence (LotjaGi1g1v0416600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATAAGGGCAGTGCTGGTTCTGAACACGCAGGGGAAGCCTCGTCTCTCCAAATTCTATGAATATCAGCCAGTGGAGAA GCAGCAGCAACTTATTCGCAATGTCTTTGCTGTCTTATGCAGTAGACCTGAACATGTCAGCAATTTTGTGGATGCCGAGT CCTTCTTTGGCCCGGATGCTCGCCTTGTCTACAAGCACTTTGCAACTTTGTACTTTGTGTTTATTTTTGATAGTTCTGAA AACGAGCTTGCCATGCTTGACTTGATACAAGTCTTAGTTGAAACGCTGGACAAATGCTTCAGAAATGTTTGTGAGCTTGA TGTCGTGTTCAACTATAGCAAGATACATACTATACTAGATGAGATTATTTTCGGAGGCCAGGTGTTGGAGACAAGTTCAA CTGAAGTTTTGAAGGCTATTGAAGAAATATCAAAGCTTGAAGCAGCATCCAATACCATGAATCTTGTTTCAAAATCTGTT TCAAATTGGAGGTCCCGGTAG
Protein sequence (LotjaGi1g1v0416600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MIRAVLVLNTQGKPRLSKFYEYQPVEKQQQLIRNVFAVLCSRPEHVSNFVDAESFFGPDARLVYKHFATLYFVFIFDSSE NELAMLDLIQVLVETLDKCFRNVCELDVVFNYSKIHTILDEIIFGGQVLETSSTEVLKAIEEISKLEAASNTMNLVSKSV SNWRSR
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 166 | 166 | 1.2E-81 | – | |
| CDD | 1 | 145 | 145 | 1.78557E-88 | – | |
| Gene3D | 1 | 162 | 162 | 7.9E-61 | – | |
| SUPERFAMILY | 1 | 145 | 145 | 7.78E-41 | ||
| PANTHER | 1 | 166 | 166 | 1.2E-81 | ||
| PIRSF | 1 | 157 | 157 | 8.2E-57 | ||
| Pfam | 1 | 146 | 146 | 3.2E-49 | ||
| ProSitePatterns | 62 | 72 | 11 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Intracellular protein transport | The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell. | ||
| Biological process | Protein transport | The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Biological process | Vesicle-mediated transport | A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane. | ||
| Cellular component | Membrane coat | Any of several different proteinaceous coats that can associate with membranes. Membrane coats include those formed by clathrin plus an adaptor complex, the COPI and COPII complexes, and possibly others. They are found associated with membranes on many vesicles as well as other membrane features such as pits and perhaps tubules. |
Expression pattern of LotjaGi1g1v0416600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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