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LotjaGi1g1v0416600.4

Overview

Field Value
Gene ID LotjaGi1g1v0416600
Transcript ID LotjaGi1g1v0416600.4
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description AP-1 complex subunit sigma-like protein; TAIR: AT3G50860.1 Clathrin adaptor complex small chain family protein; Swiss-Prot: sp|Q8VZ37|AP3S_ARATH AP-3 complex subunit sigma; TrEMBL-Plants: tr|A0A151SEJ3|A0A151SEJ3_CAJCA AP-3 complex subunit sigma-2; Found in the gene: LotjaGi1g1v0416600
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:90995598..91003032) extracted from Lotus japonicus Gifu genome v1.2.

CCCAGACCCTCCACTTACTCCTCTCTCACACTCACATACTCTGCCTTGCCTCTGATACTCACGACTCACGCTCTCAAGTC TCACTCTCACGAATCAATTCACGCTCACCAACCAGTCAGTCACCACGCCCAGACGACGCCCTCACCCTCTCCGCCTCTCG CACCCTCATCACGGCACGGCGACACCACCACCGACCACCACCACGCCACGCCTCGCCTTCCCTTCCCTTCGTATGCAGGT ATTTTGTTTTGTTTCTTCTTGGGTTCTTGTAGATGCGTGAATCGTGATTGTCTGATTGTCAATTGAGAAGGGAAGGAGCG GAGGCTAGGATTTTCTTCAGATGGTGAATATCTGAAGAATGAGAAATATTTTTCTGAAACCCTAGGTTTCAAAATTGGGG GAAATTGATTTTTCTTTCCTGTGGCTAGTTAATGTTTCCAACTCTTCATATAGCTATGCGTTTTGGAGACAAGATATTGT TGGTTAGTTTTGGAGACAATGGTCCTATGCGTTTTGGAAATTGTTGGTTAGTTTTATTGCTGTACATAATAATTCTCACA GATTATAGTAGTATTGGAGACCATTTGTCACGTTTTAGATGAAGGGGATTGGTCTTAAATCTGAAAATCTGTTTGTTCTT CTATTAATCAAAATGACCTTAATAAGTTGCTGAAATATTCAGAACAATTCTTCTATTTAATCACATATATCCTCTTGTTG AGTAGTTAGCTATGTAGCCTATAGTCTATATCACCTCACTGAGCTGAATCATTCTTTTGATTTAATTACTGAATATCACA TGCTACCTCTGGTAACCTGGTTACACAACTTGTAAGTATGGATGATTGATGAAAATCAGAATTAGAGGGTGAAACAAGAG AATCAGGAAACAGTGGAGGCATGGCTTTGGTGTTACAATTATAAGTGGGAGATGATTTGGCAAATATTTTTTCTTGGATA TGTACATCTGTATTATCATCTTTGTGTTTATACTGGATATGGTTGGGCAAAGTCATTATAAATAGAAAAATAGAACCCGA CGCGGTCTAATCCCCGGGACGGACCCCAACCGAAAGAAAGGCGCTAGACGGACTAACGGCAAGCGAGATAAAGAAAGCTG CTTTATCGTTGAAACTTTCAACTCTGTAGCTTGGCATTCCTATTCTTATTAGTATATTTCTTTTGGCCTTTTCAAAAAAA ATGTATATCAACTCTGTAATTGCAGTTTTAGCTATTTTCCTCTGTTGTGTGTTTGCAGCCTTGCTGCTGCTTTGTACCTC TCCCTCTGTGTCTTATTTTTTCTTTGTTGCTTACTTGTAATCTTTGGGATGGCACCCCTTGTGCCTTTTTATTATATCAT TGGCTTACAAAAAAAAAGCTGGATATGTCTATTTTTTTCCCTATTTTTTTTCCCTAATTCTTGTTGTGTGAAGCTTGATT TCCCAAATTCATGAGATATATTAAGAATTATAATTATGGTCTGTTTTTATTTTTAATTATATTTTTATCGATATGCTTAT TTGAAAAATTTGAACCCCCTGACCTTGGGGTCCTGGATCCGCCACTGGCGATGACTGTAGTGGTGGTTGCGGTGCAGGGA GGTGATTGTGGTGGTGATGGTGGTGGCTTCTGGCGGTATGTAGTGGTAGTGACGATGACAATGACAATGGTGGCGGCGGT GGAATGTGGTGATGATGGTGGTGGCAGCGGTAGCAGTGGTGATAGCGATGGCGACATCGACATTTGGGGGTGGAAGCAAT CGTAGTGATGGTAGTAACCATCTTTTCTCTCTATTATACCAAAACAACCTACAAAATACACTACTTTTCACTTTTTTATC TACTCATCTTCTATCTTCTCTTTCGTATGCTTCTCTATTTTTGTCGTAAAACCAAATAGAGCATTTAAGTAATGTGAATT TTTTTTTTTTGGTAAGACACGTGTCCTCTTTCGGGCCGGAACATTCATATCATGGTGGGGTTAACTCTTCCAACGGGGTG TTTCAAACACAAGACTCGAGCCCCGAAACCTTACTTAAGGAGAATCAAACATGTACTACTTGAACCAATCACACGTTAAA TAATGTGATTTCAATGCTCAAGACCCGTTATGAGAATATTTTGTTAAAAAAAATGCTTTGATGGCAGAGTTGCTAACTCC TCAGTCCTCACACATTTGAGAAAACGCTGCGTTTCGAAAATTGCAGTGCTAATCCTTCTTCGCCCATCGGCGATCGATCT GATCGGAGACTCTTCTCCGGAGCGGTTAAACTGGTGCGTCCTGTTCAATTTCGCCTTCCTTTTCTCCATCTCAGCACAGT GTTCTTCATCTGTTTCCCTCTTCGCCTGTGTTTTCTCGATCAGTGATACAAGCTTGTGATATATGAAGTGAATTTGAATT GTGATTTTGTTATCGACAGAGAAACCCAAAATGATAAGGGCAGTGCTGGTTCTGAACACGCAGGGGAAGCCTCGTCTCTC CAAATTCTATGAATATCAGGTCCCTCTCTCTTCAAACTTCAAATCTTTCGCATATGGGATGCAATTTTCACACTGTGTGT TTTATGTTGTGGTAGCTCAGCCAGTGGAGAAGCAGCAGCAACTTATTCGCAATGTCTTTGCTGGTTTCTCTTCCTAATCT CTGGACTCCATGAACTTTTGTTTGTGTGTGTTTGATTTTCTGTTCTATGTTGCCTATGTTTGTCAACTTTGTTTATTTTT CTTGCAGTCTTATGCAGTAGACCTGAACATGTCAGCAATTTTGTGGATGCCGAGTCCTTCTTTGGCCCGGTATTTTATCC TTCCATGTTCAACTTGCTGTAGTTTTGATCATAATGTATGTACTCTAGTTGTTAAAAGAGTAATTTATAAAAAAGAATGT TGTAATTGCCTTATTGGGTTTTTTTTCTTGGCATTGTTTTTTGGTGGTGTAATATATGTGAAAAGGAATTTATGGTATTG ATTTAAGTTGGCATGTGGTGAAAAGAGGTCGAGCTAGAGCTCAGTTACCACGAACTTGCTTTTAAACTAAAGTATGAAAG ACTACTATGAATATAGTTGCGAGGGTACACTTTGTTTAGAATTGGAGACTCGCTATTAAGACCAATGGGTGGTTGCCTGA TTGGTTCAAGTGGTACATGCTTGATTCCCCTTAAGCAAGGTCTTGGGTTTGAGTTATGTGAATGGACAAGACTCTTGCTG GCAGAGCTAGCCCCACTATGATATGGATGTTCCTGGCACAAACAGGGTTGTTCTCGTGGAGGATAGCTGTATTAAGCCAA AAAAAAAAGGCTCGCTGTTAGGTCTATTGTTGATTTCATATTGTGGATATAGTGGTTTTACTCTTCTATTGTTATGATAG GCAGCTAGTGCTGTGTTGTTATCTTTTTTTGACTGCCTGTCTTCGTTGGGTCAAACTTTAGCTTCTTCATCTTATTTATC TGAAAAAATAAGTTATGGATTCATTTGTTGTATTCTTCTTCAGGATGCTCGCCTTGTCTACAAGCACTTTGCAACTTTGT ACTTTGTGTTTATTTTTGATAGTTCTGAAAACGAGCTTGCCATGCTTGACTTGATACAAGGTAGGTTCCTAAACAACTGT CCATTTATTGGAAATTGTCGGTATTACGTAAATATTTTATTGCATCGCATGAAGTATGGAAATCTAGAAGATCTGTTTAT TTTTTTTACTGATGTAATTCAATATTGTAGGGTAAGACAGCAAAAGAAGGTGGCTTCTAGAAGTCATAACCTATTTAGGT TTTAGAACCTCGTAGGTCTGAAGTCATAACCTATTTAATACTTGGAAACTTAATAGCAAGTATAATAACAAAACTTGGAT GACAAGAAAGAAACTCTTAAAGTATTTTCCTAGCTCATATAATGTGCTTCTTGGACTTTAATCCTACCATTATCATCCCT AAACTAACTGAAACAATTAATTAAAATTTCTAAAATTCTTCCCTGCAAAAGTTACGTAAAAAATAAAATGATACGTAAGG GAGCCCTGTTTTAACTTTTAACAGTTGAAAGTCACCATGGGACCTAAAAGTCATAGGTATGAGTTGTGGAAGTAAATTTT TTGCAAATGCCCTGCCTACTATAGATTTACATAGTGGGTTTAACGTCTTCCCAGACCCCACTCATAGCAGGAGCTTTATA GCACCAAGATGCCATTTATATGATGGACACCCCCCTATTTTACACTCACAAAATGATTATAAGTTGTGTAAAGCACAAAA AGGTGAAACTTTGCTACATACAATCTATAGAACCTTTAAGTTTAGGAGGTTAAAAAGTGTCGACAGCATCCTGTTGTTAA CTGACAATTTTAGCAATGATCAAAACTCAAACGGTATGATCAAGTGTACAGGTTAATCTGATTAAAAGAGCATTTGATGT TGATACTTTATTGATCATTCCGTTCTTTGGTAGAACTTAATGATGATATTTGATCCATGTATGTAGAGGACCACACATCA GAGGATATGGCTTAGTTATCGTTTACACTATAAGCAGGTGAAAAAATATTCCTGTGCAATAGTTTAATTCTAGATTTTTG AAGGAATAAAAGGAATCTTATACAAGTTGTTAGTTCTCGCTGATACATATATTGGAAAATGATGTAAAATCTAATGACAA ATCGGCACAAAACCTCCCTTTTTGAAAAGCCTTTAGTTGAATTATTATTTGAGCCAAATGTTTTTGAGATCATTTTAAAT TTGTCACATTTTGAACTCCATTGTTCTCAGAATTTCCATTGAAGGTAAATGGTTTTAATGATCTATTTAACCATAAAACA GTCATTTGTTTAGATATCTAAACTCTATTGCATATTATGCTAAGGATCCTGGTGGAATAAGTATTTGCTTTATGTATTAT CCATTATATTCTGCCTGACGATTATACAGCTATTCTAACCAGTTTAATTACTGCCTCATACGTGATTGTTTATTATGGGC AATTTGCTTACTTTGTGCCTTTCTTCCTTCAGTCTTAGTTGAAACGCTGGACAAATGCTTCAGAAATGTTTGTGAGCTTG ATGTCGTGTTCAACTATAGCAAGGTTGTATGCTGTGTGCCCTCCATTATGAATTCTTAGCACAAACTGACTATATAACAA TTTACTATATTGCAAGAAATGAATTAGAAACTGAATTATTATTGAGGGAAAACATTTTCTTCTGTGTATGGAGATTTGCT AGAGTTTGCTGCAACCTGCGAGTTTTGCTGATTAGATTTCGAACATGAAGTGTTTGACTTAAGTTGTTCCGCTTTACTCA AAAAAAAATTGACGATTCAGTTAAACATTTATTTTTCACTCATTTTGGGTTGCTTTGAAAAATTGTCCTTCAGTTTAGGG AAAATGAATTACTCTTTTGCTCAGTAGCTCGATAGTGTCAATACCTAGAACCAAGCATCTTAAGTTTCCATTTTTATGTG ATCCTGAAAAATGAGTTTGTCTGCAGATACATACTATACTAGATGAGATTATTTTCGGAGGCCAGGTGTTGGAGACAAGT TCAACTGAAGTTTTGAAGGCTATTGAAGAAATATCAAAGTGCTCTCTCTCTCCTCTTGTTTTTAACATGGTTTTACTTTT TTGCATTATCATGGTCAATAAGAAAGCCCTACGTTCTGGTAAACTAGTAACCAGGGTTTTTTCACTCAGTATAAAAGCTC AACCGTTTTATTATGCAGATGGAATGATATGATGAATCAAAATTGTTTTTTACATTTACATTTTGTGGAGAATAGGTTCT AATCAAAATTGTATATTTTTTAAATTTAATGCAGGCTTGAAGCAGCATCCAATACCATGAATCTTGTTTCAAAATCTGTT TCAAATTGGAGGTCCCGGTAGTCTAATTTCATGCGGAAGGATCTGCTCTCCCACATGCGAGGGGTTTGAGATGTGAAATG AAGTGTCTTTGATGAGGGAACTGGGAAGTCAGTTAGATGCATTTTTCTTCTGATGTAGGTGCTTCTTATTGAAGCATTGA AGCAATGAATGACACCCCGAATAAGATTTCATTTAACGTAGGGGCTTCAAGAAACAATTTTCAACTTCTCTGACCACACA TTGTTCCCAACAGATACCAATTTTGGTCAATCAATTTGATTGCATTGACTTGAAATGTTTACATTGTATAAATACATTCT TACACATTGTAATTAACTTATGAGCTTTTATCCTGTACCAAACAGGAACTGCTAGAATCAATGCATTGACCAATTGCTAG ATTGTCAAGGAATTACAAGTTCTAGTTTTCTGAAATCCAAATTGTACCATCTGCAAGTTTGTTATGCAAATGTTCAGCAT ATTTGGTAAACCATTATCGCGATTCTTCCATCCAATGCACCATTAAAAGATTTGGAGAAGTTTCTGCATGTGATTCCACT GAAAGATCTATCTATCCAAGCCTGTATGCATTCGTTAACAACTTGGGCGAGAACTACAATTGAGTATCACCACTTAAGTT GTTTTTCTAACATCTTGAAGAACTACATGAGCAGCATTGCGTCCAGGAGCTCCCATAACTCCACCGCCAGGATGTGCCCC ACTTCCGCACAAGTATAACCCTTTAAGTGGAGTCTTGTAGTTTGACCTAAACCCCATATCAATGTAAACAACCATGTAGA TATCAGTTCTATGTCAGAAAACTAAACCAGATTAAATCACAGGCCACTTCAAATTTATTTTACCATCCTTTTACAGGTCG CATGAGGAAAAGAGAATCCAATCCCATAGCACCATGAAATATATTCCCTCCTGAAAGAAAGAAAAAAACGGATCAAATGT TAATAGTGAAAATGAACTAGTGGTTTCAAGCAGAACATCAACTCATGTTAAGATTCATCCATGTTTTCTTCGTTCTTTTT GTAACCTTTTGTTTAATGAACTTCTTTTATCGCCTAATAGGAAAAAAACAACTTATTTTCTCAATTAATTTCAGGGTTTT GTGCCCTAGGAAAAGCCATTTAGCTTGTAAAAATATAAACTGCAAAGGTATTTGATTAAGTGAATAAGGCAAAGTGACCT GTCAAACCGATTTCCCTTTCAAGATCTGGAGGAGTCAGCATGTCATAACCAATGATTGATGTGCTGAAGCCAGGGGCATA TTCATCAATTAATGTGAAGCATTTTTGTGCAAATGATTCCTGAACAGAACAGGTGAGATATAACGAGGCACATTTAATAT AAAGTATTCCACGACAAGTAGCTTTAGCACTAAGTGGCAACGAGCAAACACAAGTGCGTGACCATGGAAGAAAAAACAAC TCTGGACATTGAAAAGCACAACAGAGGGTGAGAAAAAAAAAATCATGAAACTAGAACATCCAAAACAAACTTACTCTGTA GTCATGATCTTGCCAGTCACCGTCCAATGGTTTGTAGGGTGTATACTGCACAAACAGGTTGATCACATGCTTACC
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0416600.4) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGATAAGGGCAGTGCTGGTTCTGAACACGCAGGGGAAGCCTCGTCTCTCCAAATTCTATGAATATCAGCCAGTGGAGAA GCAGCAGCAACTTATTCGCAATGTCTTTGCTGTCTTATGCAGTAGACCTGAACATGTCAGCAATTTTGTGGATGCCGAGT CCTTCTTTGGCCCGGATGCTCGCCTTGTCTACAAGCACTTTGCAACTTTGTACTTTGTGTTTATTTTTGATAGTTCTGAA AACGAGCTTGCCATGCTTGACTTGATACAAGTCTTAGTTGAAACGCTGGACAAATGCTTCAGAAATGTTTGTGAGCTTGA TGTCGTGTTCAACTATAGCAAGATACATACTATACTAGATGAGATTATTTTCGGAGGCCAGGTGTTGGAGACAAGTTCAA CTGAAGTTTTGAAGGCTATTGAAGAAATATCAAAGCTTGAAGCAGCATCCAATACCATGAATCTTGTTTCAAAATCTGTT TCAAATTGGAGGTCCCGGTAG
Download CDS Sequence

Protein sequence (LotjaGi1g1v0416600.4) extracted from Lotus japonicus Gifu v1.2 Proteins.

MIRAVLVLNTQGKPRLSKFYEYQPVEKQQQLIRNVFAVLCSRPEHVSNFVDAESFFGPDARLVYKHFATLYFVFIFDSSE NELAMLDLIQVLVETLDKCFRNVCELDVVFNYSKIHTILDEIIFGGQVLETSSTEVLKAIEEISKLEAASNTMNLVSKSV SNWRSR
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11753:SF42
1 166 166 1.2E-81 –
CDD
cd14834
1 145 145 1.78557E-88 –
Gene3D
G3DSA:3.30.450.60
1 162 162 7.9E-61 –
SUPERFAMILY
SSF64356
1 145 145 7.78E-41
IPR011012
PANTHER
PTHR11753
1 166 166 1.2E-81
IPR016635
PIRSF
PIRSF015588
1 157 157 8.2E-57
IPR016635
Pfam
PF01217
1 146 146 3.2E-49
IPR022775
ProSitePatterns
PS00989
62 72 11 -
IPR000804

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0006886
Biological process Intracellular protein transport The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
Subterm of
Part of
GO:0015031
Biological process Protein transport The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
Subterm of
GO:0016192
Biological process Vesicle-mediated transport A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane.
Subterm of
GO:0030117
Cellular component Membrane coat Any of several different proteinaceous coats that can associate with membranes. Membrane coats include those formed by clathrin plus an adaptor complex, the COPI and COPII complexes, and possibly others. They are found associated with membranes on many vesicles as well as other membrane features such as pits and perhaps tubules.
Subterm of
Part of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0416600.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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