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LotjaGi1g1v0424300.1

Overview

Field Value
Gene ID LotjaGi1g1v0424300
Transcript ID LotjaGi1g1v0424300.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Transcription initiation factor IIF subunit beta; TAIR: AT1G75510.1 Transcription initiation factor IIF, beta subunit; Swiss-Prot: sp|O94424|T2FB_SCHPO Transcription initiation factor IIF subunit beta; TrEMBL-Plants: tr|I3T827|I3T827_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0424300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:91883797..91891132) extracted from Lotus japonicus Gifu genome v1.2.

GGAGTATATTGCTGCTCGAAAACAAGTCCAAGTCAAATTGAATTGACTGAGAGAAGAGCGGCGTCGGTCTGAGAACACAC GGCGTAGAAGAAGGAAAAACGAAAACAATGGATGAGGAGAAAAGTGTGAGTAACGTAGAGACTTCAAAAGCTGAGAGATC GGTGTGGCTGATGAAGTGCCCTGTCGTGGTAGCTAAATCATGGCAGAATCATCACCCTTCTCCTTCACAACCTCTTTCCA AAGTCGTTCTTTCTCTTGATCCTCTCCTCCCCGAAGATGACCCTTCCCATCTCCAGGTATCCCTTTTTTACTCCATTCAA AATTGCTTCCTTCTTGCTAGCTGCTAGGGTTTATGGTATTGGTTAATTCTCCTTATTGAATGCTATTAATTAGGATTTTT AGGTTTAGTTGTTAGCTATCAACCCTGGTATATTTAATAATCATATTTAGTTGGAATCTTGGATTATGCTGAATTGAAGC TAGCTATGGTTTGTTCATAGATCTTAGGAATTGATTTGATTGGGAAGGTTATAAAATAGGGATTGATTTGTTTTTCTAAT GCTTTGGATTTGAGTGAGTTGCACGTGTTTATTGATTCAGAATTTCAGTTAAATTTGAGTGGATTCAATTTGACTTTTAA TTAGAATTGGACTTTTTATTATCATATTACCTTTGTTCTTTTCTTTCATCGGCACGAACTTTATTGTATGAAATGTAAAT GTCACAAATCCTTTTCAACCAATTACATGTGGTCTTGTGGTGGGGTAATATTACATATTGGTTCGGTTAGAATATGAGGG AAGTGGATAAAAAATGATAACAAAACACCATGTATCAATGGGACAAATTTCATGTTGATGTTCTTCATGCTATTCAGTAA TTGCTATGTTCTTTTAAGGTTTTTGAGTGTTATGTTGACTTATACTGTGACTTTTTTATGATTTTATAGTTATGAATTTT CATTTATGTTTTCTCCAATGATGTAAATCACAAGTTATTTTCTATGTATGTATATCTCATTAAGTATAATTTTGCATTTC TAGTAGGATCTTACGGTCTGATCCGATCTGATCCTATGATCTACGATCTTTTACACCCTTCTTCTGACTCTGAGTAGGAT CCCAATCCTGACAGCATTGGTAGTGACAGCTATTTATTCTGTTTGGCATTGCCTTTTGGTATTGTGCCCTTCATATAGCG TCACAAATTGCAGGGGATACTTATGGCTATAACTTTGAAACCCATGTACAATACCATTTTTTTCGGGAAGAAAAATGGGA TTTCATCCATCTTTGTCAAGAGAGGTTTTCAACACCACTGTTCAGTCCTCTCCTATAAAAACACACACCTCTTACCTTCT GTTTGGACGAACATCCTCCAACTCAGTTCTTGCTGGCATCTTTCAAGCCAAGCCACAGTATTTTATTGTAGACCACTCCT GCATTTTATCCACCCATCTGCTTTGATCTTTATGTGCTCTGTTCTCATCTCTTCTTCATGTTGCCTCTCATCTCTTCTGT AACTTCTGTTTTCTTGCTCTTTTTCATTGTGTCACTTTCACTCTCTTTTGTGTTGGTACTTTGTATTTGTTTTGAATGTT TAAACCTAGGCTTTAACTTGTATGATTCCTTGATTTCTGTTGTTATCACCTGTGTTTATGACCTCAGAGGCTTAATCTAT AAATTTTTAGCATTCTGTCTTGAGAATTTATAATACATTTCACATTTATCTAAAATTTCAATACAGCAGCCATTCCACTA TGCGCTATCCCAGATAGTGGTTTTGGGGTTGTCTGCTATGCACCACTATCTGGCATTAGTATTTGGTTGCTAGTTTCTTA ATTAATCAATCCCATAATTTGATGGTTACTTGTGATATATGTTTGTATTGTACTATGGTCCTATTCAAAATTATTGACTG TGCAAGAGGAGTGAATCCGGAGGGATCAATAGGAAAGGCAAATACCTTATGATCCACCAGATCCAGTATAGTTTAGTGCT TCTCAGTAATATTTATTGCTTGTATTGATGTGACATAGTCATTGATTTATAACTCTTTCATAATTATGTCAGTTTACAAT GGAGATGACTGGCTCTGAAGCTGTTAATATGCCAAAAACTTATGCTTTGAATATGTTTAAAGACTTCGTTCCTATGTGCG TCTTCTCTGAAACAAGCCAAGGTGAGAAATCTGATCTCAAATCGATTTCATTTATAGTTCTTAATTCATCTATTGCAATT CCAAGATTATCTTCTATTAGAACAAGGCCATGGTGCATCCATATTAGTTATGTAACCCCATTAGTTAATATAATGTTTAT TTTATAACCACATTGCCTTATAAAATGAAAGTTATGTTGTTGTAATCAAGATCATGGTTCTAATGTTTTTATTATTGATT AGGTTGTATTGATGGGTATTCAACTAACTAGCTGTTTAGTTATATAGTATTTATTGTATCATGCTAATTATCAATCTCTC TCTCCCTCTCTCTCTCTCTCTAATTTTCATAGGTGTACGTAATAAATTGGTGACTTATGCATTCAAAAGCCCAAAGTAAC CACCATGCATTTTCTTTTTATCATTTTTATATCGTTAGTACCAGTGTTATTAAATAGCGGTTATAACGGCCGCAACCCGC TATAGCGTAGCGGAAATTTGGCCCGCCGCAATCGCTACGCCGCGACATTGCGGCCACCACGACAAACGCGATCGCGGCCG CAACTCGCAATAACGCCGCCATGGGCAAAGCGGATATATCGGGTGGAGTTAATTCCACGCGTGATTTGAGGGATTTTTCT TAAATGCCACCGCTTGGAGAATGTAATACCACCGACTGATTTAATTGGATGCCAATTAGTGGAAGAAAATGGCACCGCTT GGACTTTGGAGAATGTAATGCCACCTACTGATTTTTCTAAAATGGCACCGCTTGGACTTTGGAGAATGTAATGCGACTTC TTTTTTTCACACTATTTTCTTTCCTTATCTTTTTTCCTTCCTTCTTTCTTCAAATTTCCAGACTCTGTTTTCTTTTTTTT CTTTTTTCGCTATTCACAATTAACATTTTCAGACTCCATTATCTGTTTTTTTTTCACTCTTCTTTCTTTCCTTATCTCTT TCACTTCGTTCTTTCTTCACAGTTCCAGTCTCTGTTTTTCATTTCTTCACCCTCTGTTTTCTGTTTTTTATTCTGTCTCT GTATTTTATTTCGTTCTTCTTTGGTGACAAGCTGTTTTTAATATAAAATTTCACTCATTTTAACAGCTATGCGGTTTCCG CCATTTGCCCGCGACGCTATCCGCTATATGACATAGCGGATTTTGACCTCATCGCGATTTGCCGCGATCCGCGATTAATT ACACTGGTTAGTACCTTCTAATACAAGTCAATGCATGGCCTGCTTTTATTTTTTCTTTGTTTTTAACTGTTGTCCACTTA GACAACTTGTTACAATAAAAGACATTGCTATTGTTCCCAACAGGAAAGAGGGGGGGGGGGGTTGACATCATTGTTTATTA TAGGTACCTTTCCAGTACAAAAGAAAAGGCGACATGACCTTTTTTAACTGCTGCAATATTAACTATGGCATATACGAGAC ATTTTTCATCAAATTAACTATTTGTATGGCATAATTGAGGCTTATGATTTCAAGTCATATTGTGTCTTTGAGATATGACT TGTGAGTTTTATTGTCGAATATGTCCTCAGGTTTCTACCTCTTTTTGGCATAAATTAGGCATGTTAGGTAATTGTTGGCA TTGTATTTAGTTATTCACTATATTTTGTACAACGGCTACCATGGCATATATGGGTCATTTTTCACCAAATTAACTATTTG TATGGCATAATTGATGCTTATGATTTCAAGTCATATTGTGCCTTGTATTATGCATGTTACATATTGTTTTCACCAAATTA ACTTTTTTGAGTTTCTATATTTTTTTGGTATATGTTATGCATGTTAGGTATTGTTTGCATTGTATTTAGTTATTTACCAT CTTTTATACAGCAGCCAGCATTTTGGGAGTCAACAACTCTGTAGTCTGTACTGCTATCTGAGATTAATTTCTATGATTTA AATAAGAAATAAGAAATTAAGCCACTTTCAAGTAAAAGGACTCATGAATGGGGAAACGCTGCAAATATAACCCAAGTTGG TAAAATAGAGAGGGGTACTGGTGCTAAATTTAGTTACCTTGTTAATCTGTTATTGGAGAAATCTGGTAGCAGGGGTACCA GTATCAGGATTAAGATCTTCTTCAAATTTTGATGGGGATTATTTTACCCATGCCATATCCAGCTGGCTGCCATGAGGCCA TCCCTATTGGTAGAAGAGCATGAAACCTCATATATTGATTTTTGGATTATCTGATAACTAGACAACTTAGCCTGTTGGTT GTTTAAAATGAGTTGGGTTTTTTTGCTAATTCTTTGCCGTCCTTCTCCGGACATCATGTTGTTTTCTCTTCCTGACTGTA AAACTTCGACGGAACATTATTCTGTTAGAAATGTGACGTTTTTAATGAGATGAATGGTCCTTGAGTTTAAGCAATACAAC CTGTGTTTAGTGATGGTATTAGTATTAAATATGATGTTCTTTTATTTCACTTTTTTGTTTTGCAGTTTTTGTAGCCATCA TATGTAATATAACAGGATAGGATTTTGGCAAATTGGATTGTTTGAATGAGATGTTTTGGAAATTTAGTTGGTCTAGTTAA TTTGTTTTATCATGACTTGGAAGGTGATAACTGTTAATGATGGTATACTTAATGATTTAAAATGGATGATCAATATTTTG ATATATGGTTCCCTCCTGAGCTTTGCTGCCTTTAGTTACGTAACTGCTTTTGCCTTTATTTTAGGTGGCAAGGTTGCAAT GGAAGGGAAAGTAGAACATAAGTTTGATATGAAGCCCCACGGTGAAAACATTGAAGAATATGGCAAATTGTGCCGCGAGA GGACAAACAAATCTATGATTAAAAATCGACAGATACAGGTAGTGTTTCATGTCTACTATTTAATTATGCCTTTAGTAATT CTTGCTATATGTCTATGTCTAAATGATTGATTTATTGGTTCCCCTGATTCAATTGGAAGGTTATTGATAATGATCGTGGA GTTCTAATGAGGCCAATGCCCGGAATGATTGGTCTAGTTTCATCCAATTCGAAGGTACCCTATTTTGTATACAATTTATG ATATGCCATACTTGTGGCTAACATGTAGTTGTGCATTTAGTTGACTATTTGTGGCTTTGGCTTATGGTTTTTACATTAAT AATCAGAACTCGAATTTCATGAATGACTTAAAACATGGTATTTAGAGGGGAAATGGAAAGAATAAATTGTATTATTGAAT GACTTAAGTTTTTTATACTGGGTTATATGCACTAATCTATACACACTGTCATCAGTTAATAAATTAACTAGCGACGATAA CAACTTAACGGAAAATAACTAAACTAATTTTTCAACCATATAGCTAACTAAATTTAACTTTAACACGTCATGAGATAATA GGCAGTCATAAGTGTATCCGTAGAAAGATACCATCTAAATTGGTGTTATTTCTATGATAATTCATTGTAGATGAATAATA TTCATTCCATGTAGAAAGTTTGGTCCTTCAAACGTGTTTATGGATAGGAATAATTCTGTGAGGACTTTTCTTATTCGTAT GAAACTCTCACAGGACAAGAAGAGGACACAGCCAGTTAAGCAATCTGATACAAAGAGAACAAGAAGAGATCGTGGAGAGT TGGAGGATATAATGTTCAAGCTATTTGAAAGACAGCCTAACTGGGCCTTGAAGCAGCTTGTCCAAGAGACTGATCAACCT GCAGTATGTTTTCTTTCTTGTGTTTCAAATATTGCTGGGCTTGGTTGGAGGGAGCTTTTTTCACAATCATGGATTGTCTT GGTATTTCTTCTCAAAAATACATATATGTTTGCATTAAAAGCTAATCTGGTATCTTCGCCCCCTTTTTCTTTTGCAGCAA TTCTTGAAAGAGATCCTGAATGAATTGTGCGTGTACAATAAAAGAGGTGCCAACCAAGGAACTTACGAGCTGAAACCCGA ATACAAGAAATCCGTTGAAGATGTGAAGGTTGAATAAGTGATTTGTTCCCTACACACTGTTACTCTAACTACTCAAACCC CCCAAAAAATGAAACCTCTTTCTGTTTATTGAGAAGGTAAGTGTTTGTGTTTAGGGTAAATAGGTTGAAGGAAGGGAAAA AAATTATTGGACAATAAAATAACTAGTAAAAATGTGTATCTGAACTCAAAGAACACTTTTTATGATTTTTTACTTCAAGA AGAATATTAAGTAATAGAAGATTCAATGAGATAGTAAAAATGTTTGAAAACATCACACTTCTTAGTTCTTTCATATTTTC ATGTCAACATTGTCAGGTGCCTATTACATGAACATTTTTAAAGCACGCCATTTACCGTACCAAGAAGTTATGAAAATAAA ACAGATCAGCCACAAATCTTTATTGTTATTTATGTTCTGAGGGAAGAAAGGTTACGTATTTATGTTCTTTAGGGAGAAAA GAGGGGGAGAATTGAGCAAGTGTTTTACAGGTTAGAGGGAACTAAATTTTTAGATTTGGGGATAAAGTTTGGGTAAATAG CCAAGTTGGTCCCTAAATGTGTCAGCCACCTTCAGATTAGTCCCTAAACTTTTAAAACGCCTCTCGTGGTCCCTGAATGT GGCAAAACTCCTTCACGGTAGTCTCTGGGTTAAAACAAGTTGACGAACGTTAACGGAATGCTGACATGGCTTTTTTTTTG TCAATGGGAAGCTTACATGGCATTTTAACCCAAAATAATAATAAAATAAAATAGTTAAATAAATAAATAAACCAATAAAT AAAAAAAACTAATCCTAAATTACTCTTCATCATCTCACCGTCTTCATCATCACATCAACCCAACACCAGAACCAACATGA ACCAGCCTACCATCTTCTGGAATCACGCTAGCAAAAACGAAGAAGCCAGAAGCAGATGAAGAAGCTTCAATCAGACAACA AAAAAGAACGGAAAAGCACAAAGCTTGAATCAGAAAATAACGGTACGTGATGAGGGCGAAGAGGATATAATCGTTGTGGG TGCTAGTTTACATGGTGCTGAGGCCAGATCTGAAGCTTTCTCACGTGATCTAAGTTGAAAAGCTTGAAGCTTTCACCTTT TTTTCTCATGTTTGAGCTTCAATGTTGAACAAGGGTCAGATCCGAAGAAATACATAAACTTGGTGGTGGTGGTGCGGTGT GGGTTGGGGTTGGTGGTGGTGGTGCGGTGTGGTGGTGTTCCGACCTAGCTCATGTT
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0424300.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGATGAGGAGAAAAGTGTGAGTAACGTAGAGACTTCAAAAGCTGAGAGATCGGTGTGGCTGATGAAGTGCCCTGTCGT GGTAGCTAAATCATGGCAGAATCATCACCCTTCTCCTTCACAACCTCTTTCCAAAGTCGTTCTTTCTCTTGATCCTCTCC TCCCCGAAGATGACCCTTCCCATCTCCAGTTTACAATGGAGATGACTGGCTCTGAAGCTGTTAATATGCCAAAAACTTAT GCTTTGAATATGTTTAAAGACTTCGTTCCTATGTGCGTCTTCTCTGAAACAAGCCAAGGTGGCAAGGTTGCAATGGAAGG GAAAGTAGAACATAAGTTTGATATGAAGCCCCACGGTGAAAACATTGAAGAATATGGCAAATTGTGCCGCGAGAGGACAA ACAAATCTATGATTAAAAATCGACAGATACAGGTTATTGATAATGATCGTGGAGTTCTAATGAGGCCAATGCCCGGAATG ATTGGTCTAGTTTCATCCAATTCGAAGGACAAGAAGAGGACACAGCCAGTTAAGCAATCTGATACAAAGAGAACAAGAAG AGATCGTGGAGAGTTGGAGGATATAATGTTCAAGCTATTTGAAAGACAGCCTAACTGGGCCTTGAAGCAGCTTGTCCAAG AGACTGATCAACCTGCACAATTCTTGAAAGAGATCCTGAATGAATTGTGCGTGTACAATAAAAGAGGTGCCAACCAAGGA ACTTACGAGCTGAAACCCGAATACAAGAAATCCGTTGAAGATGTGAAGGTTGAATAA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0424300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MDEEKSVSNVETSKAERSVWLMKCPVVVAKSWQNHHPSPSQPLSKVVLSLDPLLPEDDPSHLQFTMEMTGSEAVNMPKTY ALNMFKDFVPMCVFSETSQGGKVAMEGKVEHKFDMKPHGENIEEYGKLCRERTNKSMIKNRQIQVIDNDRGVLMRPMPGM IGLVSSNSKDKKRTQPVKQSDTKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGANQG TYELKPEYKKSVEDVKVE
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10445:SF2
6 254 249 2.0E-115 –
PANTHER
PTHR10445
6 254 249 2.0E-115
IPR003196
SUPERFAMILY
SSF50916
9 118 110 1.31E-14
IPR011039
CDD
cd07980
9 117 109 1.03582E-18 –
Pfam
PF17683
16 131 116 1.4E-7
IPR040504
MobiDBLite
mobidb-lite
163 188 26 - –
MobiDBLite
mobidb-lite
171 188 18 - –
Gene3D
G3DSA:1.10.10.10
184 251 68 3.0E-31
IPR036388
SUPERFAMILY
SSF46785
184 250 67 1.17E-21
IPR036390
Pfam
PF02270
186 249 64 2.5E-20
IPR040450

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005674
Cellular component Transcription factor TFIIF complex A general transcription initiation factor which in humans consists of a heterodimer of an alpha and a beta subunit. Helps recruit RNA polymerase II to the initiation complex and promotes translation elongation.
Subterm of
Part of
GO:0006366
Biological process Transcription by RNA polymerase II The synthesis of RNA from a DNA template by RNA polymerase II, originating at an RNA polymerase II promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs).
Subterm of
GO:0006367
Biological process Transcription initiation from RNA polymerase II promoter Any process involved in the assembly of the RNA polymerase II preinitiation complex (PIC) at an RNA polymerase II promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter. The initiation phase includes PIC assembly and the formation of the first few bonds in the RNA chain, including abortive initiation, which occurs when the first few nucleotides are repeatedly synthesized and then released. Promoter clearance, or release, is the transition between the initiation and elongation phases of transcription.
Subterm of
Part of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0424300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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