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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0424300 |
| Transcript ID | LotjaGi1g1v0424300.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Transcription initiation factor IIF subunit beta; TAIR: AT1G75510.1 Transcription initiation factor IIF, beta subunit; Swiss-Prot: sp|O94424|T2FB_SCHPO Transcription initiation factor IIF subunit beta; TrEMBL-Plants: tr|I3T827|I3T827_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0424300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:91885016..91891038) extracted from Lotus japonicus Gifu genome v1.2.
AAAAACGAAAACAATGGATGAGGAGAAAAGTGTGAGTAACGTAGAGACTTCAAAAGCTGAGAGATCGGTGTGGCTGATGA AGTGCCCTGTCGTGGTAGCTAAATCATGGCAGAATCATCACCCTTCTCCTTCACAACCTCTTTCCAAAGTCGTTCTTTCT CTTGATCCTCTCCTCCCCGAAGATGACCCTTCCCATCTCCAGGTATCCCTTTTTTACTCCATTCAAAATTGCTTCCTTCT TGCTAGCTGCTAGGGTTTATGGTATTGGTTAATTCTCCTTATTGAATGCTATTAATTAGGATTTTTAGGTTTAGTTGTTA GCTATCAACCCTGGTATATTTAATAATCATATTTAGTTGGAATCTTGGATTATGCTGAATTGAAGCTAGCTATGGTTTGT TCATAGATCTTAGGAATTGATTTGATTGGGAAGGTTATAAAATAGGGATTGATTTGTTTTTCTAATGCTTTGGATTTGAG TGAGTTGCACGTGTTTATTGATTCAGAATTTCAGTTAAATTTGAGTGGATTCAATTTGACTTTTAATTAGAATTGGACTT TTTATTATCATATTACCTTTGTTCTTTTCTTTCATCGGCACGAACTTTATTGTATGAAATGTAAATGTCACAAATCCTTT TCAACCAATTACATGTGGTCTTGTGGTGGGGTAATATTACATATTGGTTCGGTTAGAATATGAGGGAAGTGGATAAAAAA TGATAACAAAACACCATGTATCAATGGGACAAATTTCATGTTGATGTTCTTCATGCTATTCAGTAATTGCTATGTTCTTT TAAGGTTTTTGAGTGTTATGTTGACTTATACTGTGACTTTTTTATGATTTTATAGTTATGAATTTTCATTTATGTTTTCT CCAATGATGTAAATCACAAGTTATTTTCTATGTATGTATATCTCATTAAGTATAATTTTGCATTTCTAGTAGGATCTTAC GGTCTGATCCGATCTGATCCTATGATCTACGATCTTTTACACCCTTCTTCTGACTCTGAGTAGGATCCCAATCCTGACAG CATTGGTAGTGACAGCTATTTATTCTGTTTGGCATTGCCTTTTGGTATTGTGCCCTTCATATAGCGTCACAAATTGCAGG GGATACTTATGGCTATAACTTTGAAACCCATGTACAATACCATTTTTTTCGGGAAGAAAAATGGGATTTCATCCATCTTT GTCAAGAGAGGTTTTCAACACCACTGTTCAGTCCTCTCCTATAAAAACACACACCTCTTACCTTCTGTTTGGACGAACAT CCTCCAACTCAGTTCTTGCTGGCATCTTTCAAGCCAAGCCACAGTATTTTATTGTAGACCACTCCTGCATTTTATCCACC CATCTGCTTTGATCTTTATGTGCTCTGTTCTCATCTCTTCTTCATGTTGCCTCTCATCTCTTCTGTAACTTCTGTTTTCT TGCTCTTTTTCATTGTGTCACTTTCACTCTCTTTTGTGTTGGTACTTTGTATTTGTTTTGAATGTTTAAACCTAGGCTTT AACTTGTATGATTCCTTGATTTCTGTTGTTATCACCTGTGTTTATGACCTCAGAGGCTTAATCTATAAATTTTTAGCATT CTGTCTTGAGAATTTATAATACATTTCACATTTATCTAAAATTTCAATACAGCAGCCATTCCACTATGCGCTATCCCAGA TAGTGGTTTTGGGGTTGTCTGCTATGCACCACTATCTGGCATTAGTATTTGGTTGCTAGTTTCTTAATTAATCAATCCCA TAATTTGATGGTTACTTGTGATATATGTTTGTATTGTACTATGGTCCTATTCAAAATTATTGACTGTGCAAGAGGAGTGA ATCCGGAGGGATCAATAGGAAAGGCAAATACCTTATGATCCACCAGATCCAGTATAGTTTAGTGCTTCTCAGTAATATTT ATTGCTTGTATTGATGTGACATAGTCATTGATTTATAACTCTTTCATAATTATGTCAGTTTACAATGGAGATGACTGGCT CTGAAGCTGTTAATATGCCAAAAACTTATGCTTTGAATATGTTTAAAGACTTCGTTCCTATGTGCGTCTTCTCTGAAACA AGCCAAGGTGAGAAATCTGATCTCAAATCGATTTCATTTATAGTTCTTAATTCATCTATTGCAATTCCAAGATTATCTTC TATTAGAACAAGGCCATGGTGCATCCATATTAGTTATGTAACCCCATTAGTTAATATAATGTTTATTTTATAACCACATT GCCTTATAAAATGAAAGTTATGTTGTTGTAATCAAGATCATGGTTCTAATGTTTTTATTATTGATTAGGTTGTATTGATG GGTATTCAACTAACTAGCTGTTTAGTTATATAGTATTTATTGTATCATGCTAATTATCAATCTCTCTCTCCCTCTCTCTC TCTCTCTAATTTTCATAGGTGTACGTAATAAATTGGTGACTTATGCATTCAAAAGCCCAAAGTAACCACCATGCATTTTC TTTTTATCATTTTTATATCGTTAGTACCAGTGTTATTAAATAGCGGTTATAACGGCCGCAACCCGCTATAGCGTAGCGGA AATTTGGCCCGCCGCAATCGCTACGCCGCGACATTGCGGCCACCACGACAAACGCGATCGCGGCCGCAACTCGCAATAAC GCCGCCATGGGCAAAGCGGATATATCGGGTGGAGTTAATTCCACGCGTGATTTGAGGGATTTTTCTTAAATGCCACCGCT TGGAGAATGTAATACCACCGACTGATTTAATTGGATGCCAATTAGTGGAAGAAAATGGCACCGCTTGGACTTTGGAGAAT GTAATGCCACCTACTGATTTTTCTAAAATGGCACCGCTTGGACTTTGGAGAATGTAATGCGACTTCTTTTTTTCACACTA TTTTCTTTCCTTATCTTTTTTCCTTCCTTCTTTCTTCAAATTTCCAGACTCTGTTTTCTTTTTTTTCTTTTTTCGCTATT CACAATTAACATTTTCAGACTCCATTATCTGTTTTTTTTTCACTCTTCTTTCTTTCCTTATCTCTTTCACTTCGTTCTTT CTTCACAGTTCCAGTCTCTGTTTTTCATTTCTTCACCCTCTGTTTTCTGTTTTTTATTCTGTCTCTGTATTTTATTTCGT TCTTCTTTGGTGACAAGCTGTTTTTAATATAAAATTTCACTCATTTTAACAGCTATGCGGTTTCCGCCATTTGCCCGCGA CGCTATCCGCTATATGACATAGCGGATTTTGACCTCATCGCGATTTGCCGCGATCCGCGATTAATTACACTGGTTAGTAC CTTCTAATACAAGTCAATGCATGGCCTGCTTTTATTTTTTCTTTGTTTTTAACTGTTGTCCACTTAGACAACTTGTTACA ATAAAAGACATTGCTATTGTTCCCAACAGGAAAGAGGGGGGGGGGGGTTGACATCATTGTTTATTATAGGTACCTTTCCA GTACAAAAGAAAAGGCGACATGACCTTTTTTAACTGCTGCAATATTAACTATGGCATATACGAGACATTTTTCATCAAAT TAACTATTTGTATGGCATAATTGAGGCTTATGATTTCAAGTCATATTGTGTCTTTGAGATATGACTTGTGAGTTTTATTG TCGAATATGTCCTCAGGTTTCTACCTCTTTTTGGCATAAATTAGGCATGTTAGGTAATTGTTGGCATTGTATTTAGTTAT TCACTATATTTTGTACAACGGCTACCATGGCATATATGGGTCATTTTTCACCAAATTAACTATTTGTATGGCATAATTGA TGCTTATGATTTCAAGTCATATTGTGCCTTGTATTATGCATGTTACATATTGTTTTCACCAAATTAACTTTTTTGAGTTT CTATATTTTTTTGGTATATGTTATGCATGTTAGGTATTGTTTGCATTGTATTTAGTTATTTACCATCTTTTATACAGCAG CCAGCATTTTGGGAGTCAACAACTCTGTAGTCTGTACTGCTATCTGAGATTAATTTCTATGATTTAAATAAGAAATAAGA AATTAAGCCACTTTCAAGTAAAAGGACTCATGAATGGGGAAACGCTGCAAATATAACCCAAGTTGGTAAAATAGAGAGGG GTACTGGTGCTAAATTTAGTTACCTTGTTAATCTGTTATTGGAGAAATCTGGTAGCAGGGGTACCAGTATCAGGATTAAG ATCTTCTTCAAATTTTGATGGGGATTATTTTACCCATGCCATATCCAGCTGGCTGCCATGAGGCCATCCCTATTGGTAGA AGAGCATGAAACCTCATATATTGATTTTTGGATTATCTGATAACTAGACAACTTAGCCTGTTGGTTGTTTAAAATGAGTT GGGTTTTTTTGCTAATTCTTTGCCGTCCTTCTCCGGACATCATGTTGTTTTCTCTTCCTGACTGTAAAACTTCGACGGAA CATTATTCTGTTAGAAATGTGACGTTTTTAATGAGATGAATGGTCCTTGAGTTTAAGCAATACAACCTGTGTTTAGTGAT GGTATTAGTATTAAATATGATGTTCTTTTATTTCACTTTTTTGTTTTGCAGTTTTTGTAGCCATCATATGTAATATAACA GGATAGGATTTTGGCAAATTGGATTGTTTGAATGAGATGTTTTGGAAATTTAGTTGGTCTAGTTAATTTGTTTTATCATG ACTTGGAAGGTGATAACTGTTAATGATGGTATACTTAATGATTTAAAATGGATGATCAATATTTTGATATATGGTTCCCT CCTGAGCTTTGCTGCCTTTAGTTACGTAACTGCTTTTGCCTTTATTTTAGGTGGCAAGGTTGCAATGGAAGGGAAAGTAG AACATAAGTTTGATATGAAGCCCCACGGTGAAAACATTGAAGAATATGGCAAATTGTGCCGCGAGAGGACAAACAAATCT ATGATTAAAAATCGACAGATACAGGTAGTGTTTCATGTCTACTATTTAATTATGCCTTTAGTAATTCTTGCTATATGTCT ATGTCTAAATGATTGATTTATTGGTTCCCCTGATTCAATTGGAAGGTTATTGATAATGATCGTGGAGTTCTAATGAGGCC AATGCCCGGAATGATTGGTCTAGTTTCATCCAATTCGAAGGTACCCTATTTTGTATACAATTTATGATATGCCATACTTG TGGCTAACATGTAGTTGTGCATTTAGTTGACTATTTGTGGCTTTGGCTTATGGTTTTTACATTAATAATCAGAACTCGAA TTTCATGAATGACTTAAAACATGGTATTTAGAGGGGAAATGGAAAGAATAAATTGTATTATTGAATGACTTAAGTTTTTT ATACTGGGTTATATGCACTAATCTATACACACTGTCATCAGTTAATAAATTAACTAGCGACGATAACAACTTAACGGAAA ATAACTAAACTAATTTTTCAACCATATAGCTAACTAAATTTAACTTTAACACGTCATGAGATAATAGGCAGTCATAAGTG TATCCGTAGAAAGATACCATCTAAATTGGTGTTATTTCTATGATAATTCATTGTAGATGAATAATATTCATTCCATGTAG AAAGTTTGGTCCTTCAAACGTGTTTATGGATAGGAATAATTCTGTGAGGACTTTTCTTATTCGTATGAAACTCTCACAGG ACAAGAAGAGGACACAGCCAGTTAAGCAATCTGATACAAAGAGAACAAGAAGAGATCGTGGAGAGTTGGAGGATATAATG TTCAAGCTATTTGAAAGACAGCCTAACTGGGCCTTGAAGCAGCTTGTCCAAGAGACTGATCAACCTGCAGTATGTTTTCT TTCTTGTGTTTCAAATATTGCTGGGCTTGGTTGGAGGGAGCTTTTTTCACAATCATGGATTGTCTTGGTATTTCTTCTCA AAAATACATATATGTTTGCATTAAAAGCTAATCTGGTATCTTCGCCCCCTTTTTCTTTTGCAGCAATTCTTGAAAGAGAT CCTGAATGAATTGTGCGTGTACAATAAAAGAGGTGCCAACCAAGGAACTTACGAGCTGAAACCCGAATACAAGAAATCCG TTGAAGATGTGAAGGTTGAATAA
CDS sequence (LotjaGi1g1v0424300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATGAGGAGAAAAGTGTGAGTAACGTAGAGACTTCAAAAGCTGAGAGATCGGTGTGGCTGATGAAGTGCCCTGTCGT GGTAGCTAAATCATGGCAGAATCATCACCCTTCTCCTTCACAACCTCTTTCCAAAGTCGTTCTTTCTCTTGATCCTCTCC TCCCCGAAGATGACCCTTCCCATCTCCAGGTTATTGATAATGATCGTGGAGTTCTAATGAGGCCAATGCCCGGAATGATT GGTCTAGTTTCATCCAATTCGAAGGACAAGAAGAGGACACAGCCAGTTAAGCAATCTGATACAAAGAGAACAAGAAGAGA TCGTGGAGAGTTGGAGGATATAATGTTCAAGCTATTTGAAAGACAGCCTAACTGGGCCTTGAAGCAGCTTGTCCAAGAGA CTGATCAACCTGCACAATTCTTGAAAGAGATCCTGAATGAATTGTGCGTGTACAATAAAAGAGGTGCCAACCAAGGAACT TACGAGCTGAAACCCGAATACAAGAAATCCGTTGAAGATGTGAAGGTTGAATAA
Protein sequence (LotjaGi1g1v0424300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDEEKSVSNVETSKAERSVWLMKCPVVVAKSWQNHHPSPSQPLSKVVLSLDPLLPEDDPSHLQVIDNDRGVLMRPMPGMI GLVSSNSKDKKRTQPVKQSDTKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGANQGT YELKPEYKKSVEDVKVE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 5 | 58 | 54 | 3.8E-67 | – | |
| PANTHER | 5 | 58 | 54 | 3.8E-67 | ||
| SUPERFAMILY | 9 | 53 | 45 | 4.71E-6 | ||
| PANTHER | 61 | 173 | 113 | 3.8E-67 | ||
| PANTHER | 61 | 173 | 113 | 3.8E-67 | – | |
| MobiDBLite | 81 | 107 | 27 | - | – | |
| MobiDBLite | 90 | 107 | 18 | - | – | |
| Gene3D | 103 | 170 | 68 | 1.4E-31 | ||
| SUPERFAMILY | 103 | 169 | 67 | 5.44E-22 | ||
| Pfam | 105 | 168 | 64 | 1.2E-20 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Transcription factor TFIIF complex | A general transcription initiation factor which in humans consists of a heterodimer of an alpha and a beta subunit. Helps recruit RNA polymerase II to the initiation complex and promotes translation elongation. | ||
| Biological process | Transcription by RNA polymerase II | The synthesis of RNA from a DNA template by RNA polymerase II, originating at an RNA polymerase II promoter. Includes transcription of messenger RNA (mRNA) and certain small nuclear RNAs (snRNAs). | ||
| Biological process | Transcription initiation from RNA polymerase II promoter | Any process involved in the assembly of the RNA polymerase II preinitiation complex (PIC) at an RNA polymerase II promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter. The initiation phase includes PIC assembly and the formation of the first few bonds in the RNA chain, including abortive initiation, which occurs when the first few nucleotides are repeatedly synthesized and then released. Promoter clearance, or release, is the transition between the initiation and elongation phases of transcription. |
Expression pattern of LotjaGi1g1v0424300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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