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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0424500 |
| Transcript ID | LotjaGi1g1v0424500.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | V-type proton ATPase subunit a; TAIR: AT4G39080.1 vacuolar proton ATPase A3; Swiss-Prot: sp|Q8W4S4|VHAA3_ARATH V-type proton ATPase subunit a3; TrEMBL-Plants: tr|A0A151RQM9|A0A151RQM9_CAJCA V-type proton ATPase subunit a; Found in the gene: LotjaGi1g1v0424500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:91898044..91904261) extracted from Lotus japonicus Gifu genome v1.2.
GGGGACGAAAAGGAAGCATTGTAAACCGCGGGATAGAAATAGCGGCAAAGATTTGATTTAGTGCGGTGATTGAAAACAAA CACTTTCTCAAAAAAGCAACAAGAGCATATAGCATCATTCATTCTGTGCTTGGTGCATTTTTGGAACTCCAATGGAAAAT GAACGTTATTGCCTTCCCGCGATGGATCTGCTGCGATCGGAGCCTATGCAACTGGTTCAATTGATCATTCCAATCGAAGC AGCTCATCGATCCATCTCTTACCTTGGCGAACTCGGTCTCTTCCAATTCAGAGATGTACGTATGATTGCCTCTTTTCAAA TTCTCGTTGCTCTCTCGCTTTGGATCATTTGATTTGATTTGATTTCTTCATCTGTTTGAATGTAATTCATTTCCTGTATT GATGAATCTTGTTGAAATCAATTCTCCAGATGAATGCAGATAAAAGCCCTTTTCAACGGACTTACGCTGCTCAGGTGCAT CCTCTCGCATTTCTTTTTCCTGCTTAATTGGAACTATGCTGCGTTGCGTGTTGTTGTTCTACTTCAGCTTATTGTAATCA GTTTCTACGATTCAATTTTATTGAAGAAAACATCTAGAATTTTATTTATCTGTTTCTGTTTTAGATCTTCAATGTTTTGT GCTGGTGATCTTAGGATGAAAATTTGATTTCTTATGCTATGTTGAATGTTGATACAATGATATATAAGCACATGAGATAA TTTATAAGTAGATTAGGCGAGGCACAGTGATAAATAGTATCTTGTCTTTTGGGCAACATTGAGCGCTAGGTTCATGCAAC ATTGGACATGTCAATGTTGCTAAGTAATCCAGCTTCTGCCGCTCGTCGCCTTTTTAACGTTGCGAAAAACCTGTGTCTGC ATTTTCTACTCTGTCAAGTTTTACAGAATTGACTGGAACACTTACCATTTTACCATTTAGATGAAAAGATGTGGGGAAAT GGCACGCACGCTTCGGTTATTCAAGGAACAAATGACGAAGGCAGGTGTTTCACCCTCACCAACTCGGTCAACAAGAGACG GTTATGTAGATTTGGATAGTTTGGAGGTTGTTGCCTGCGCTGAAATTTTTATCACACGCTCTTTTGTTTAAGAATGCAGT GCTATGTAATGAAACTTTTCTGTATCGCTAGGGTAAACTTGCAGAACTTGAAGCTGAGCTACTCGAGATTAATGGAAACA ATGAGAAGTTGCAGCACGCTTACAATGAGCTATTCGAGTATAAGCTTGTTCTGGAAAAGGTATGATTTGCTAAGGTCGTA ATTACAAGTTTACAACCACCTCATCTGATACGAGCTAGATTTACTTTATTGTTAATCTTATTTGTGTTTAAATGAAAGTG TATAATCATTTTGTCGTTTCTATATTATGATTTTAAGGTCTCACTGGGTACCTATTTCTAGTACAGATGTAAACTTCTTC GAAGATTTAAATCATGTATCAACTCTAATCATACTATAGCTTGGTTTATCATTATAGGTCGGTGAGTTTTTCTCTAAGGC ACAAAATAGTGCTGTAGCTCACCAGAGGGGTCTTGAAGTCCAGACAATTGTTGAGGGATCTATTGATAGCCCATTATTAC TGGAACAAGTATAAGCTCCAGCTTTGTAGTTCTGGTTTTATTACTCTTTTACAGTTTGTTATATTTCTTCTGTTGATGAG TGATGACGCTAACCAAATTTATGTTCTACAGGAGACAACATATGCGTCAAAGCAGATCAAACTGGGGTTTGTCAGTGGTC TTGTTCCTAGAGAAAAATCAATTCCTTTCGAAAGAATTTTATTTCGTGCTACTAGGGGAAACGTTTTTCTCAAGCAGGCT GTGATTGAACATCCTGTTCTTGATCCTATGTCAGGAGACAAGGTAACTTATTCTAAAGTTGTAACTATAAATCTTTAATG GTTTAATATCTTTTAGAAGTTAAGATATATAGTATGCACACTAGATCATCACATTTCCTCATTTTATCATTTGCCAATCT GAATAAGCTGTAAGTTTTAGGAAATGAATGAGTACTTTTTTTTCTTATTCTAGCAATTTACTCTTTATTGTTACTGCTCA GTTCTACTTTCTTAGTCTTTTTCACTGATAATCTCATAACCTCCCCTTTTACAGGTTCATAAAAATGTCTTTGTCGTATT TTATTCTGGAGAAGGAGTTAAAAGTAAAATTCAAAAGATATGTGATGCTTTTGGAGCAAATCGTTATCCTTTCTCAGATG ACTTGAGTAAACAATTTCAGCTGATAACAGAGGTAGACGTAAATTTCTTGTAGGTATTTGCTTAGGTTTCAATTGCTGTT AACTAAATGCCTTAGGTTGCTTCTTCGGGATTACTTCTTGTTAAATTCTACAATTTTGGGTGTCTACGCTCAAATGAGTG TTTACTTACCATTGTTACTATAAAAGCATTGAATCAGTCCCATGGTTTTATTTGAAATACCAATAATACTCGGTCTAGTT TGCCCCTACTAGTTGTTCTTAATAGCATGAAAGACTGAAAGTTGATGAGCCACTGAGATTAATTATTGTATATTTTGAAC TTGCTAGGTGTCAGTAAAACTTGAAGAATTAAAGGCAACCATTGATGTAGGTATGCTTCACCGGAGCACTTTGTTGCAGA CAATTGGAAATCAATTTGAGCAGTGGAGCATTCTGGTTTGTTTGTCCTTTTCGATTTAGCATTTCTAAGGATTATCAATT TGTTAGAAGATTGCTAGGAATAAAACTCCTATCATTCTCTTTTTAACAGATAAAGTTCATGTTAGTTTCATTAAATTAAT GTTGGCCACTTCTTATTTAGTAAGATACATATGAATTCCACTTAATAATAAAAGATTTGCTAAAAATATTGTAAAACAGG ATATGTTGCTAGTATTTTCCTTATTGATAAAAGACATGCATAGTTTTTATAAAAAAAATATGCATATTGCATAGGCTTTG TGATATATGTTTTTCTTTTTAGTTTTGCATCTAAGCTTCTGCATTATGTTTCATTTTGAAGATGACATTTCCTTAAATTT TAATTGATAGTTGAAGAAGGAAAAATCCATTTACTACACTCTAAATATGCTAAGCATTAATGTCACGAGGAAATGTCTCC TTGCAGAAGGTTGGTGTCCGGTTTTTGCAGCTACTCAGGTTTGTCCTTGAGCTATGGATTTAATTTATGATGCGATGTGC ATACACATATTTGGAGTGTAATTTTTTGCTTGTTGGCCTAGCTAACTAATTTGAATTCAATTCTTAGCAGATTCAAAAAG CATTGCAGCGGGCAACTATGGACTGTAACTCTCAAGTTGGAGCTATATTTCAGGTTTTACAAACAAAGGAATCACCGCCT ACCTATTTTTGCACAAACAAGTTTACTTCTTCATTTCAAGAAATCGTAGATGCCTATGGGTATGTGACAGAGCTCAGCAA TTTAAAGCTTACGTGATTAATTTATAAGCTTGTTTCATGACATCTCAAATCATATAAGCTTGTTTGATTAACTCAAATCA TATATTGTCAATACTCGACAGAGTTGCCAGGTACCGGGAAGCAAATCCTGGAGTATACACAATCATCACATTTCCATTCC TTTTTGCTGTAATGTTTGGTGACTGGGGGCATGGTATATGCTTATTACTGGCATCTTTGTATTTCATAATCAAAGAAAAG AAGTTTTCTTCTCAGGTATTTAACTCATGTATATTTGCTGAGTGTTCTCTCATTTTTAATGTAAGCACCAGTTTTGTTTG ATATTGTTAATGGCAGAAACTTGGAGACATATTAGAAATGGCTTTTGGGGGACGCTATATTATTATGTTGATGGCACTAT TCTCAATCTACACCGGCTTGATATATAATGAATTCTTCTCAATTCCATTTGAACTATTTGGACCATCTGCCTATGGATGC CGTGAGTCTTCATGCAGGTGGTTACCAATTCAATTTATTCAACAAACTACTTTTTATATATGCTAATTGAGTGATTGGTC ACAATATTATTTGTAAGTTTAGTGTATTATTACTTTTATAGGGATGCTTCTACAACAGGTTTAATGAAAGTGCGGGGCAC TTACCCATTTGGTGTGGATCCTAAATGGCATGGTACTCGAAGTGAACTTCCATTTCTTAACTCTTTGAAAATGAAGATGT CAATTCTACTGGGAGTATCTCAGATGAATCTTGGAATCATGTTGAGTTACTATAATGGAAAATACTTTGGAAACGACATA GATGTCTGGTAATAGAGAAAATATAGTTTTAGTTGAATGTGGTCTGTTGTTTATCTGTGTCCCGTTTGATTTTTTGATGT TGCTTCAGGTACCAGTTTGTTCCCCAGATGATATTCTTAAACAGCCTATTCGGCTACCTTTCACTCCTCATAATTGTAAA ATGGTGGACTGGATCACAGGCTGACCTGTATCATGTGATGATATACATGTTCCTAAGTCCAGCTGATGATTTGGGTGAAA ACCAGCTCTTTGTTGGACAAAGGTTCCTTCAAGTAAGAAATTTCAAATCTCATTTATTTTTTTGTTAGTTATATTGAACA TGAACAGATGTCAAATATGAACTGTCTACTATTTCATTGCTGTTAGATTGTGCTGCTACTGTTGGCACTCGTCGCTGTAC CTTGGATGCTATTACCAAAGCCCTTTCTCCTGAAGAAGCAACATCTAGAAGTATACTCTAAACTATTATTTATCTTGTTT TTTGTTTTTATTTGTTCTTATTGAACCCCGTTTTAATTTTTTACCTTGCTTCATCAGAGGCATCAAGGTGAATCTTACTC TTTGCTCTATGCTGGGGATGAACCTCTTGAATCAGAGTCAAATAGTACTCCCCGCGATCATGAGGAGTTTGATTTCAGCG AGGTTTTAGTGCACCAACTGATACATACAATAGAATTTGTGCTTGGAGCTGTGTCTAATACGGCTTCATACCTACGTTTA TGGGCCCTCAGGTAGGTAGTTGAAAGCGTTTGTTGCTGTTCTGTGAACTAACTTTGGTTAGAAACTTACAATGAATTAAA GTTCAACATAGATGTGTGCACGCTATCCCTTCAAGCAAGGTAATTGGAATGCAATTTAGGCTTTGATAAATTGCAATTCA TGGATGGCAAGAACTATGAATCAGTAAAGGTCCAATGGATTTTTGGAATCCAGTTTAGTCCTTAGGAATGAAAGAAACCT CACACAAAATGCATACGTACTTTGAAGGAAAATATTGGAAAATTAGTCACTTAGAAGTGTTGCAAGAAACCTTTATCTTA TTATTGTACAGACTTCAGCGATCTCATTAAATGTGTACATCTCCAAATGCATCATAACCTACAATTTAAATTTTTCTTTG GTTTTTGGTCTTGTTCAGTCTAGCTCATTCAGAGTTATCAAGCGTTTTCTATGACAAAGTTCTACTTCTAGCATTGGGGT AAGTTCTTTTAGCTTTGTTATGTAATAACTGGTGGGCATGAAGAAGGTTACCTGGTGCATTAAAACCCTTATATATTGAT GTTTGTTTAACTCATGCAGGTATAGCAACATCATTGTTCTCATTGTTGGCATTATTGTTTACATATGTGCTACTGTTGGT GTGTTACTGGTAATGGAAAGTCTGAGTGCTTTCTTGCATGCTTTGAGACTTCACTGGGTTGAGTTTCAGAACAAATTTTA TCAGGGAGATGGTTACAAGTTCTTTCCATTTTCATTTACATCACTTAATAATGAGGATGAACTGTAGCTGCTAAATACTG GACAATATGTATAGATAGAAAGGTCAATTTTACCTCAAGAACCTGGCATGTGTAGTATATGAAGCTTTCACTTCAAGTCG CCCAATTTGTAGTTATATCGTGTATTCATGTTATCAGTTGTCTTCTGAAATAAGAGCACTGAGACAATGGAAGGTCTGTC TCTCTTGTTTGTTGGCCATTAACACTTGGAGTCAAAACTCTAAAGCAAGCAGATTAAGAGGAAAGAAAAACAATTCCATT CAGCAACTACAAGTTGAGGCGTTTTCATTGTACATCAAATGCATATGACAGCACATTTAAGTTGAGTGTGGTGTATAATA TATCTGGAAATTAATATATTTTTTCCAGTTTATTTTTGAGTCATTCATTCAAATTGTAGTCATTATACCCACACAAAAAA TTGTAGTCATTATATATTGTCATCTCAGGTTAATCATTACGAGACAATCGTTGGTTGC
CDS sequence (LotjaGi1g1v0424500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGAAAATGAACGTTATTGCCTTCCCGCGATGGATCTGCTGCGATCGGAGCCTATGCAACTGGTTCAATTGATCATTCC AATCGAAGCAGCTCATCGATCCATCTCTTACCTTGGCGAACTCGGTCTCTTCCAATTCAGAGATATGAATGCAGATAAAA GCCCTTTTCAACGGACTTACGCTGCTCAGATGAAAAGATGTGGGGAAATGGCACGCACGCTTCGGTTATTCAAGGAACAA ATGACGAAGGCAGGTGTTTCACCCTCACCAACTCGGTCAACAAGAGACGGTTATGTAGATTTGGATAGTTTGGAGGGTAA ACTTGCAGAACTTGAAGCTGAGCTACTCGAGATTAATGGAAACAATGAGAAGTTGCAGCACGCTTACAATGAGCTATTCG AGTATAAGCTTGTTCTGGAAAAGGTCGGTGAGTTTTTCTCTAAGGCACAAAATAGTGCTGTAGCTCACCAGAGGGGTCTT GAAGTCCAGACAATTGTTGAGGGATCTATTGATAGCCCATTATTACTGGAACAAGAGACAACATATGCGTCAAAGCAGAT CAAACTGGGGTTTGTCAGTGGTCTTGTTCCTAGAGAAAAATCAATTCCTTTCGAAAGAATTTTATTTCGTGCTACTAGGG GAAACGTTTTTCTCAAGCAGGCTGTGATTGAACATCCTGTTCTTGATCCTATGTCAGGAGACAAGGTTCATAAAAATGTC TTTGTCGTATTTTATTCTGGAGAAGGAGTTAAAAGTAAAATTCAAAAGATATGTGATGCTTTTGGAGCAAATCGTTATCC TTTCTCAGATGACTTGAGTAAACAATTTCAGCTGATAACAGAGGTGTCAGTAAAACTTGAAGAATTAAAGGCAACCATTG ATGTAGGTATGCTTCACCGGAGCACTTTGTTGCAGACAATTGGAAATCAATTTGAGCAGTGGAGCATTCTGTTGAAGAAG GAAAAATCCATTTACTACACTCTAAATATGCTAAGCATTAATGTCACGAGGAAATGTCTCCTTGCAGAAGGTTGGTGTCC GGTTTTTGCAGCTACTCAGATTCAAAAAGCATTGCAGCGGGCAACTATGGACTGTAACTCTCAAGTTGGAGCTATATTTC AGGTTTTACAAACAAAGGAATCACCGCCTACCTATTTTTGCACAAACAAGTTTACTTCTTCATTTCAAGAAATCGTAGAT GCCTATGGAGTTGCCAGGTACCGGGAAGCAAATCCTGGAGTATACACAATCATCACATTTCCATTCCTTTTTGCTGTAAT GTTTGGTGACTGGGGGCATGGTATATGCTTATTACTGGCATCTTTGTATTTCATAATCAAAGAAAAGAAGTTTTCTTCTC AGAAACTTGGAGACATATTAGAAATGGCTTTTGGGGGACGCTATATTATTATGTTGATGGCACTATTCTCAATCTACACC GGCTTGATATATAATGAATTCTTCTCAATTCCATTTGAACTATTTGGACCATCTGCCTATGGATGCCGTGAGTCTTCATG CAGGGATGCTTCTACAACAGGTTTAATGAAAGTGCGGGGCACTTACCCATTTGGTGTGGATCCTAAATGGCATGGTACTC GAAGTGAACTTCCATTTCTTAACTCTTTGAAAATGAAGATGTCAATTCTACTGGGAGTATCTCAGATGAATCTTGGAATC ATGTTGAGTTACTATAATGGAAAATACTTTGGAAACGACATAGATGTCTGGTACCAGTTTGTTCCCCAGATGATATTCTT AAACAGCCTATTCGGCTACCTTTCACTCCTCATAATTGTAAAATGGTGGACTGGATCACAGGCTGACCTGTATCATGTGA TGATATACATGTTCCTAAGTCCAGCTGATGATTTGGGTGAAAACCAGCTCTTTGTTGGACAAAGGTTCCTTCAAATTGTG CTGCTACTGTTGGCACTCGTCGCTGTACCTTGGATGCTATTACCAAAGCCCTTTCTCCTGAAGAAGCAACATCTAGAAAG GCATCAAGGTGAATCTTACTCTTTGCTCTATGCTGGGGATGAACCTCTTGAATCAGAGTCAAATAGTACTCCCCGCGATC ATGAGGAGTTTGATTTCAGCGAGGTTTTAGTGCACCAACTGATACATACAATAGAATTTGTGCTTGGAGCTGTGTCTAAT ACGGCTTCATACCTACGTTTATGGGCCCTCAGTCTAGCTCATTCAGAGTTATCAAGCGTTTTCTATGACAAAGTTCTACT TCTAGCATTGGGGTATAGCAACATCATTGTTCTCATTGTTGGCATTATTGTTTACATATGTGCTACTGTTGGTGTGTTAC TGGTAATGGAAAGTCTGAGTGCTTTCTTGCATGCTTTGAGACTTCACTGGGTTGAGTTTCAGAACAAATTTTATCAGGGA GATGGTTACAAGTTCTTTCCATTTTCATTTACATCACTTAATAATGAGGATGAACTGTAG
Protein sequence (LotjaGi1g1v0424500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MENERYCLPAMDLLRSEPMQLVQLIIPIEAAHRSISYLGELGLFQFRDMNADKSPFQRTYAAQMKRCGEMARTLRLFKEQ MTKAGVSPSPTRSTRDGYVDLDSLEGKLAELEAELLEINGNNEKLQHAYNELFEYKLVLEKVGEFFSKAQNSAVAHQRGL EVQTIVEGSIDSPLLLEQETTYASKQIKLGFVSGLVPREKSIPFERILFRATRGNVFLKQAVIEHPVLDPMSGDKVHKNV FVVFYSGEGVKSKIQKICDAFGANRYPFSDDLSKQFQLITEVSVKLEELKATIDVGMLHRSTLLQTIGNQFEQWSILLKK EKSIYYTLNMLSINVTRKCLLAEGWCPVFAATQIQKALQRATMDCNSQVGAIFQVLQTKESPPTYFCTNKFTSSFQEIVD AYGVARYREANPGVYTIITFPFLFAVMFGDWGHGICLLLASLYFIIKEKKFSSQKLGDILEMAFGGRYIIMLMALFSIYT GLIYNEFFSIPFELFGPSAYGCRESSCRDASTTGLMKVRGTYPFGVDPKWHGTRSELPFLNSLKMKMSILLGVSQMNLGI MLSYYNGKYFGNDIDVWYQFVPQMIFLNSLFGYLSLLIIVKWWTGSQADLYHVMIYMFLSPADDLGENQLFVGQRFLQIV LLLLALVAVPWMLLPKPFLLKKQHLERHQGESYSLLYAGDEPLESESNSTPRDHEEFDFSEVLVHQLIHTIEFVLGAVSN TASYLRLWALSLAHSELSSVFYDKVLLLALGYSNIIVLIVGIIVYICATVGVLLVMESLSAFLHALRLHWVEFQNKFYQG DGYKFFPFSFTSLNNEDEL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 421 | 421 | - | – | |
| PANTHER | 7 | 818 | 812 | 0.0 | – | |
| PANTHER | 7 | 818 | 812 | 0.0 | ||
| PIRSF | 9 | 819 | 811 | 1.7E-292 | ||
| Pfam | 37 | 810 | 774 | 7.0E-291 | ||
| Coils | 101 | 128 | 28 | - | – | |
| Phobius | 422 | 446 | 25 | - | – | |
| TMHMM | 424 | 446 | 23 | - | – | |
| Phobius | 447 | 466 | 20 | - | – | |
| TMHMM | 466 | 488 | 23 | - | – | |
| Phobius | 467 | 484 | 18 | - | – | |
| Phobius | 485 | 546 | 62 | - | – | |
| Phobius | 547 | 565 | 19 | - | – | |
| TMHMM | 549 | 571 | 23 | - | – | |
| Phobius | 566 | 584 | 19 | - | – | |
| TMHMM | 584 | 606 | 23 | - | – | |
| Phobius | 585 | 604 | 20 | - | – | |
| Phobius | 605 | 635 | 31 | - | – | |
| TMHMM | 632 | 654 | 23 | - | – | |
| Phobius | 636 | 654 | 19 | - | – | |
| Phobius | 655 | 744 | 90 | - | – | |
| Phobius | 745 | 776 | 32 | - | – | |
| TMHMM | 754 | 776 | 23 | - | – | |
| Phobius | 777 | 819 | 43 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Vacuolar proton-transporting V-type ATPase, V0 domain | The V0 domain of a proton-transporting V-type ATPase found in the vacuolar membrane. | ||
| Molecular function | Proton transmembrane transporter activity | Enables the transfer of a proton from one side of a membrane to the other. | ||
| Cellular component | Proton-transporting V-type ATPase, V0 domain | A protein complex that forms part of a proton-transporting V-type ATPase and mediates proton transport across a membrane. The V0 complex consists of at least four different subunits (a,c,d and e); six or more c subunits form a proton-binding rotor ring. | ||
| Biological process | Proton transmembrane transport | The directed movement of a proton across a membrane. |
Expression pattern of LotjaGi1g1v0424500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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