Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0441700 |
| Transcript ID | LotjaGi1g1v0441700.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | PHD finger alfin-like protein; TAIR: AT5G05610.1 alfin-like 1; Swiss-Prot: sp|Q9FFF5|ALFL1_ARATH PHD finger protein ALFIN-LIKE 1; TrEMBL-Plants: tr|C6T7X8|C6T7X8_SOYBN Putative uncharacterized protein; Found in the gene: LotjaGi1g1v0441700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:93850981..93852367) extracted from Lotus japonicus Gifu genome v1.2.
TATGATCCGATCTACGATCCTACAATCTATGATCTTTCTACCCCCTCTCGATCCTGACAACAATGTATTGCACTTTTTCG GTTGGCTGCTCTGCTCTTCTCTACTACCCTGTGTTGATTTCTATGAATTTTCCTTTATGGCTTTCCCTTCAACTAGAAAC TACAAGGATTTCCATTTGGAAGAGATATGATATAGAAAACTTCGATTGAATTTTTCTGTGGTAGCACTTTTGCTCAATAC GTACTGTAACATCGCATATAGTTCCTTCTGTTGATGGTTTCCATGATTCTTTATGGCAGGAAACGTTTGTTCAGTCTGAT CAATGACTTTCCCACCGTGTTTGAAGTTGTGACTGACAGGAAACCAGCTAAAGACAAGCCAGCCACGGATAGTGGAAGCA AATCCAGAGGAAGCACCAAGGTTAGTGTTTTCCTTTTCTAGTGGTAACTGTTTCTCTGTTTCTTTTGACTGGTTCAGTAT AGGTTACTTCAATGTCTTGGTTTGGGAATTGCTTGTGCATTGTGAAAGCTTCATATAAGATACAATTTGATAATGAAAGT CAGTATATCAATGTCATTATATTCCTAACTCATCAGATAAAATTTGATACTGAAAAACCTACCTACGCTGCTTCTAAAAT CTAAAATCTAAAAGTATCTCCTAACATGTTTATTGTGATAGCTAAGGGTGAGAAGAGTGAATGATGACCCAAATACAAAT ATTACAGGATGTTAAGGTCCCACATTGACACATTAGACTCAGCCCGAATTATAAGTCAGGAAACACAAACCTAGGATATC TGAAGACATTTTACATCTGTTTTATTTTTAGCATGAGGAAAACTTCTCAAAGCAACTTTTGAGAAGCACAGACAAATACT AGACTAGGCCTTGGAATTGCTTATTCCTGTCTCATAAATTTGATGCCATTGCTGACCTAAGTTCAGAATCTTTCGCTATC ACATTTGCATCTCTGTTAAGCCTATGGAGAAAATCCAAAAAGTTAAAAATATTATCCATGGACTACATTTTAGAAAGCTG TCAGTACCATGATCTCTGCTTTTCTATGTTATCAGACAACTAGTCAAGGAGTTGTATATTCCCTCTTTGATGTGAGCTTG CACGATTATTTGCAGAGATCTAGTGATGGGCAAGTTAAGAGCAACCCTAAGTTTGCAGAGGAGGGTTATGAGGAGGAGGA TGATGAGCACAGTGAAACCCTTTGCGGGAGCTGCGGTGGAAACTACAATGCCGACGAGTTTTGGATTGGGTGCGACATAT GCGAGAGGTGGTACCATGGGAAGTGTGTGAAGATTACACCTGCAAAGGCTGAGAGCATAAAGCAATATAAGTGCCCATCA TGCAGCATGAGGAGGGGCAGGCCCTAG
CDS sequence (LotjaGi1g1v0441700.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAACGTTTGTTCAGTCTGATCAATGACTTTCCCACCGTGTTTGAAGTTGTGACTGACAGGAAACCAGCTAAAGACAA GCCAGCCACGGATAGTGGAAGCAAATCCAGAGGAAGCACCAAGAGATCTAGTGATGGGCAAGTTAAGAGCAACCCTAAGT TTGCAGAGGAGGGTTATGAGGAGGAGGATGATGAGCACAGTGAAACCCTTTGCGGGAGCTGCGGTGGAAACTACAATGCC GACGAGTTTTGGATTGGGTGCGACATATGCGAGAGGTGGTACCATGGGAAGTGTGTGAAGATTACACCTGCAAAGGCTGA GAGCATAAAGCAATATAAGTGCCCATCATGCAGCATGAGGAGGGGCAGGCCCTAG
Protein sequence (LotjaGi1g1v0441700.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKRLFSLINDFPTVFEVVTDRKPAKDKPATDSGSKSRGSTKRSSDGQVKSNPKFAEEGYEEEDDEHSETLCGSCGGNYNA DEFWIGCDICERWYHGKCVKITPAKAESIKQYKCPSCSMRRGRP
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 2 | 123 | 122 | 1.0E-68 | – | |
| PANTHER | 2 | 123 | 122 | 1.0E-68 | – | |
| MobiDBLite | 19 | 68 | 50 | - | – | |
| MobiDBLite | 33 | 50 | 18 | - | – | |
| SUPERFAMILY | 59 | 122 | 64 | 8.42E-20 | ||
| Gene3D | 63 | 124 | 62 | 1.0E-24 | ||
| ProSiteProfiles | 68 | 120 | 53 | 9.348 | ||
| SMART | 70 | 118 | 49 | 4.2E-10 | ||
| CDD | 70 | 120 | 51 | 5.45143E-29 | – | |
| ProSitePatterns | 71 | 117 | 47 | - | ||
| Pfam | 71 | 118 | 48 | 2.1E-11 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi1g1v0441700.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…