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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0456600 |
| Transcript ID | LotjaGi1g1v0456600.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Elongation factor P; TAIR: AT3G08740.1 elongation factor P (EF-P) family protein; Swiss-Prot: sp|Q54760|EFP_SYNE7 Elongation factor P; TrEMBL-Plants: tr|I3T3T8|I3T3T8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0456600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:96002274..96005960) extracted from Lotus japonicus Gifu genome v1.2.
ACCCTCTCCAGAGATGTATCTAAGATAGTGATGTCACACTGTAAAGTCAATCCAATTCGAGCAAGACAATCAACGACGAC ATTAACTTCTCTAAAAACATATCACAAAGCGAATTTCCATGTGCTAATTATTTTACACTCTCACTCTAAAATAATTAGCA TCACCAAATTATCCCCTTTAAAAAAAACCAAATCATTCAATTAAAAGAAAAGTTTTGAACATAAACACATAATATTTGAA ATACCCCAATTAAGGCAAACTAGCCAAATGCATAGAATGTGAGCAAGAAGCTCTTCCCTTATCTCTTCACCAAGAAGCAA AAGCATTTCCAGTTCCAACACAACAACAATGGTGGCGGGAACTGCAACCATGAGGCTGAGTCTCTCAGCTTCGTCTTCAT CTTTGCGTTTTGCTTCCTCCTCCTACTCTTCATTCCCATCAAACCCATCTCTTCTTCCAATGCGAAACCCTTCTTCCAAA CCCCGATTTTTCAGTCAGTACTCTTCATTCAATTCCCACTTCTTCTTCTCTAACAAACCCTAATTCCTCACTGATAATCT GTGCTTTTTCTTTCAGAGATTTACGCCTTGACCAGCAATGACATCAAGGTCGGTTCCAACGTTGAAGTCGACGGTGCCCC TTGGCGTGTCCTAGGTGATTTTTCAATTATCACATTCTTGATTTCAATTTCAATTTCACAGATAGTTTAACTTGCATTCA ATTGCGTGTTTTTTTTTTTGCCATGAATCAGAGTTTCTTCATGTGAAACCCGGAAAAGGTGCAGCTTTTGTGAGGACCAA GCTCAAGAATTATCTTACAGGGAATACAGTTGATAAAACCTTCAGAGCTGGAAGCTCGGTAGTGCTCCGTAAACTTCAAG CCCTTACTTTAATCACTGCATTTTTTCTTAGAGGAATGCTAAAGAGTGTGTAGATTTGTAGTGAAATCTAGTGAAATGTT TAATTTGTAGTCGTGTTTTTCGTTTCGTAATTTTTAGGATTTCTGTTTGTTTTATTAGTGGATTCAGTAGAAGATGAGTA AACTTGAAGATGAATTTTTGCTTGCTAATTACAAGTTTTCTATGTCTAAAGCCGACTTGATCCACTATTGTCATGTAATT GTATTGTAACGTGGGGTGAAAGGGGTTTTCGGCTGCTTGTCTTACAACATTTGTCTAAAACAAATTATACATTTTTGTGG GTTTCCTTGTGAATCGCTAAGGTAATCAAGTCGGGTATCATAGATGTGAGTAGCAAGAGTATACTATGATGGCATGACAC ATGAAGTATTCAAAGAGCCATGTCTGTCTATATTTGTTTTGCTTCTGATTTCTTATTTTCGACTAAATTGTATTGGTTTT CATTTCCACTCTATCTGTTATATTTCCTTTTGACAGATTGAACAAGCAGATATTCTCAAGGAAACAAAGCAGTTCACATA TAAAGATGGTTCTCAATTTGTCTTCATGGACTTGGTATTATCTAGAACCTATAGTTATATAATCTCATCAGATATATATA CTTTTTCTTGGCGCAAAATACAATTACCTCCCAACAGTCGTTGATTATGAGGAAGAGTTACCCCAAATTCCCAATTTGGT TTATATTTTCTTTGGAATAATCCTTTTGTTTTAGTAATTAGTACTAGTAATTATTTGCAAACAATTAATGTACATAGTGC TGTCATAGCTACTCTCTATGTCTGACTTGCTGTATTGTAATTTTATCAGAATTCATACGAGGAGGTTCGTCTGGATGAAA AAGATATTGGAGACAGAACAAAGTGGCTGAAAGAGGGAATGGACTGCAGTATACTGTTATGGAATGGAAAAGTAAATTCA TCATCTCATAATTTATTACTGTCTTTCACTATCTCACACTTTTATTATTCTAGTCAGTTTTTGTGATAATTTTTTTTTGT AAACCATGTTCAAGGAAAAATAGCAGCCTAAAAACTCAAATAGATATATAGTTCTGATATTCATTTAAGGTGAAATAACT AATTGCAATTTAATTTGTCCCAAGGGAGGAAAGTGCTGATGCATAGTTACTGATGTATAAAACTAATCTAAGATGTATTC AAATTCCATAACTTTTATTTTATTTGGAAGTCCTTACATTTATATGACTGTATCAGGCTATCAGCTTTAATAGTACTATC ACTTTCATACAGGGACTGCATGCTTTTCTAAAGTTTTGAATGGTCTGCAATGGTAAATACGTCTTGTGGGGTTATTTTTT GTGAACAATATTTGCTTTGCAAGTTTTTTCACGTAGATGGCTGTTGAATAGATCCTATGGTTACTTATTATAGTTCTGTC CAAGGTGTGTTCTTGTAATAGTTAATGTTTTCAAGTATGCTTGCACAGTGAATGGGATTCTTGATTTTGCATACATTGGC ACTAGACTCTTCTAAACTGAGTAAGGCTGCCTCCATCCTTGATTTTACATGTATATTGTGTTCTTAACCCACTAAAATTG AAGGGTAGGTGCGCCCTTAATTATTAATTTTAGAGACAAATTCACTCTAGATGAGTTTTTTCCAATTGACAGTATGGCAT TTATAAATTAATAGCATATGTCAGTGCAGCTCCTCCTCCTCTTGATCTTGTATATCAACTTGTCTCTTGATCTTTTTTCA GGTTATTGATATTGATCTCCCTATCACAGTCAAGCTTACTGTAGTCGATGTTGATCCTGGACTTAAGGGTGACACAGCTC AAGGTGATGCCATGTTGTTTAATGTTTATATCGTAAATTTCTGTCTGATCAAAATCATATTATAAACTAAACATTGTAAA TGCCATCCATATGTGGAGCTTAGAAAGTTCAATACACTAAAAATGACTCCTTGACAATAATTGTCATTGTGATCTTTCTA AATCTCTCATGAGATGATATCATGACTAGGATTTCCTGTCATGCATATTTCACAATTTGGCATAAAAAATAAGTGAGCCT GATTGAGTTTCATCTTCATAAATTTGGTCATATAAAACCTTAGGCTATGTTTGGATATCCGTTGACATCATTGCAAACAG ACATTAGCACACACTTCGAGACAAAAAGTAAACATAACTCTTTTTATGGATTAACAAAAAGTAAGCACGTATGTATTGAA CACCAAAACGGTAGGATTTGTTTGTTTACTAGTGCGGCTTGTGATATCCTATTATGGTTTTTATTGTTTGTTTTCCTCAT TTGTCCCGTGTCATCTTTTTTCTTACATTCCTTTGTAGCACTTACTGATCCTCTCTGAAAATGAAATTTTGATTCACAGG TGGATCAAAGCCAGCCACTCTTGACACTGGTGCTGTTGTCAACGTCCCACTCTTTGTAAATGTAGGTGATGAAATACTGG TTGATACAAGAAATGGGGTGTACATGAGTCGGGCTTAGGACTTCACATCCAGTTTTGTAGTCAAAGTCTTAAGAATTGTG AAACCTTTTGTTCCTTTTTGTAAGCATAATTTACTAATGGAGAATTAAATTGATAACTCGTAGCATATTAATATCAAGCT TAGCTAATCGGCTATGTACCTTGCAATATTGAGGTAAAATTGTATTGTAAAGGCTCTTGCAGCATTATTCTTCAGCATGA TTTGGTGTATGAAACTTTGTCCTCATAATCCGGAAATTATACGACCTCTATTCTTTAACTTAATCTAAACTAAATTATTC TGCAGCA
CDS sequence (LotjaGi1g1v0456600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTGGCGGGAACTGCAACCATGAGGCTGAGTCTCTCAGCTTCGTCTTCATCTTTGCGTTTTGCTTCCTCCTCCTACTC TTCATTCCCATCAAACCCATCTCTTCTTCCAATGCGAAACCCTTCTTCCAAACCCCGATTTTTCAAGATTTACGCCTTGA CCAGCAATGACATCAAGGTCGGTTCCAACGTTGAAGTCGACGGTGCCCCTTGGCGTGTCCTAGAGTTTCTTCATGTGAAA CCCGGAAAAGGTGCAGCTTTTGTGAGGACCAAGCTCAAGAATTATCTTACAGGGAATACAGTTGATAAAACCTTCAGAGC TGGAAGCTCGATTGAACAAGCAGATATTCTCAAGGAAACAAAGCAGTTCACATATAAAGATGGTTCTCAATTTGTCTTCA TGGACTTGAATTCATACGAGGAGGTTCGTCTGGATGAAAAAGATATTGGAGACAGAACAAAGTGGCTGAAAGAGGGAATG GACTGCAGTATACTGTTATGGAATGGAAAAGTTATTGATATTGATCTCCCTATCACAGTCAAGCTTACTGTAGTCGATGT TGATCCTGGACTTAAGGGTGACACAGCTCAAGGTGGATCAAAGCCAGCCACTCTTGACACTGGTGCTGTTGTCAACGTCC CACTCTTTGTAAATGTAGGTGATGAAATACTGGTTGATACAAGAAATGGGGTGTACATGAGTCGGGCTTAG
Protein sequence (LotjaGi1g1v0456600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVAGTATMRLSLSASSSSLRFASSSYSSFPSNPSLLPMRNPSSKPRFFKIYALTSNDIKVGSNVEVDGAPWRVLEFLHVK PGKGAAFVRTKLKNYLTGNTVDKTFRAGSSIEQADILKETKQFTYKDGSQFVFMDLNSYEEVRLDEKDIGDRTKWLKEGM DCSILLWNGKVIDIDLPITVKLTVVDVDPGLKGDTAQGGSKPATLDTGAVVNVPLFVNVGDEILVDTRNGVYMSRA
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 27 | 27 | - | – | |
| Phobius | 1 | 9 | 9 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 22 | 22 | - | – | |
| Phobius | 10 | 19 | 10 | - | – | |
| Phobius | 20 | 27 | 8 | - | – | |
| PANTHER | 24 | 236 | 213 | 1.5E-109 | ||
| PANTHER | 24 | 236 | 213 | 1.5E-109 | – | |
| Phobius | 28 | 236 | 209 | - | – | |
| Hamap | 52 | 236 | 185 | 45.642 | ||
| Gene3D | 53 | 113 | 61 | 3.4E-26 | ||
| SUPERFAMILY | 54 | 114 | 61 | 1.76E-18 | ||
| TIGRFAM | 54 | 236 | 183 | 2.1E-72 | ||
| Pfam | 55 | 110 | 56 | 5.7E-25 | ||
| Gene3D | 115 | 177 | 63 | 1.1E-22 | – | |
| SMART | 118 | 172 | 55 | 6.4E-23 | ||
| SUPERFAMILY | 118 | 177 | 60 | 3.9E-16 | ||
| CDD | 122 | 177 | 56 | 1.0728E-25 | ||
| Pfam | 122 | 172 | 51 | 3.5E-21 | ||
| Gene3D | 179 | 236 | 58 | 2.8E-25 | – | |
| SUPERFAMILY | 179 | 236 | 58 | 1.42E-16 | ||
| CDD | 180 | 235 | 56 | 2.49896E-25 | ||
| Pfam | 180 | 235 | 56 | 8.2E-27 | ||
| SMART | 180 | 235 | 56 | 2.2E-30 | ||
| ProSitePatterns | 201 | 220 | 20 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Translation elongation factor activity | Functions in chain elongation during polypeptide synthesis at the ribosome. | ||
| Cellular component | Cytoplasm | All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. | ||
| Biological process | Translational elongation | The successive addition of amino acid residues to a nascent polypeptide chain during protein biosynthesis. | ||
| Biological process | Peptide biosynthetic process | The chemical reactions and pathways resulting in the formation of peptides, compounds of 2 or more (but usually less than 100) amino acids where the alpha carboxyl group of one is bound to the alpha amino group of another. This may include the translation of a precursor protein and its subsequent processing into a functional peptide. |
Expression pattern of LotjaGi1g1v0456600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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