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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0457300 |
| Transcript ID | LotjaGi1g1v0457300.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Vacuolar sorting receptor; TAIR: AT3G52850.1 vacuolar sorting receptor homolog 1; Swiss-Prot: sp|P93026|VSR1_ARATH Vacuolar-sorting receptor 1; TrEMBL-Plants: tr|G7KY61|G7KY61_MEDTR Vacuolar sorting receptor; Found in the gene: LotjaGi1g1v0457300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:96060339..96067113) extracted from Lotus japonicus Gifu genome v1.2.
AACAAGTTCAATGCTTAATGATACCATTACTCAAATTTGAAACAAATAATTTAGCCTTCTCAATCATCTTCTAAATTGAA TACTAGCTAGAAATATTCCAGCTGATGTTCTGCGACTAGTCTCAACAACGTTGTTATATTATTAGAATGTTTCTTTAAAT GGCACGTTGCATTCACTTGTTCTTAGCAGTTTGCAGGTGATGATTCCAATTAACCGTTGAACGTAACCAACACGTTTCAC TCATCTATTTCGACACTTCTAAGGTGGTGCTTTTCCTTTCATACGCATCATCACTGTGCTGACCCAGAAGGCTTTAAACC TTCATCGATCACAAAAGCAACTTTTTTTTGACTCAATTTCCAATTTCCTGATCTGGGTCTCTTTCCTTTTCAATTAATTC ATCCAAACAGGGTTGCATTAATTGCAGTTTGAATATCAGTTTGTGCATGAAGATGAGCATAAAGTTGAGTTTCTTGTTGT TTGTTTGGGTTCTGCTATTGGGGAGTTGTTTGGGCAGGTTTGTGGTGGAGAAGAATAGCTTGAAGGTCACTTCTCCGAAA TCTTTGAAGGGTTTATATGAATGTGCGATTGGGAATTTTGGGGTTCCTAAGTATGGAGGAACATTGATTGGTTCTGTTGT GTACCCAAATGTGAATCGGATGGGATGCAAGAACTTCACTGATTTCAATGCTTCGTTTCAGTCCAAGCCTGGAGTTTTCC CCACCTTTGTTCTTGTTGATCGTGGAGGTGAGCTTCTAATTGGTCTTTCTTAACTCTTCAGCTTGTGAATAACCCATAAA TTTATAAGGGAAAAAAATGATCAATGTTTTGTAGTAAATCACTTGGGTTTGGTTTAGTTTAGTGGTTGATTTTGTTTGTA TAACATGGCGTTTTTTAAGGAGGCAGCTACTTTTTCAAGTTCCATACTGTATTTTGATTATGGTAATTTAAATATGTTGT GCATTTTGGAATTGCTTTCTTTTCTTTATGATATGGAAAGTTGCCGTTTACTAATCAAATAATTGAAAGGCCATTGTTAT ACTATTTTTGGAATATTCTGGTTTTAAGTTTTTAAGTTGGGACCATAAACACTTTAGGTCTTCCCAGTATGATGTGACTA GGTAATTGTTGCAAAAGATTGTGTAAATGTTGCATTTATTGTTCAGGTTAAGGATGCATAATCTCTCTTGCCTTTGATTT AATGTGAAGTTTATTTATTTATTGGTTTGGAGTATGAGAATAGAAACTCTGCCTATGCTTTTGCATAGCCGGTCGTAAGT CCAGATAAAAGAGGAAGGTTGTGTTAGGCTTTAGGAAACCAACGTAAACACACCATATCTTTAATATTGATATGTGATCC ATATAGCCGACTTCACCTAGTGAGATAAGGCTTTGGTTACGGTTTTGGAGTATGGGAATTGAGATAAGGGGCACTCTATT GTAGCAGAACGTGTTCTCTGGTTAACCTATTCTATCTTTGTAGACTGTATGTTGCCACACTGATGATATTGCATAGATCA TTAGGATCACAACCACTCAGAAAATGACTTTGAAAATTTATTCTCTGGTCTTTTTTGTAGAATGCTACTTCACCTTGAAG GCGTGGAACTCACAAAATGCTGGAGCAGCAGCTATACTTGTAGCCGATGACAGGACAGAATCATTGATCACCATGGACAC TCCTGAAGAAGGGCATATTGCAAATGACGATTATGTAGAGAAGATTAGCATTCCTTCTGCTCTTATCAGTAAATCCTTGG GGGATAGCATCAAGGAGACTCTCTCCAAGGAGGAGACAGTCTACGTAAATCTTGATTGGCGAGAGGCTCTTCCACATCCC GACGAGAGAGTTGAGTATGAATTGTGGACGAATAGCAATGATGAGTGTGGGCCAAAGTGTGACAATCAAATTAATTTCAT GAAGAGCTTCAAAGGGGTAGCGCAGCTACTCGAACGGAAGGGGTTCGCTCAGTTTACCCCTCGCTATATAACTTGGTATT GCCCTGAAGAGTTTCGCTTAAGCAAACAGTGCAAGTCTCAGTGCATAAACAACGGAAGATACTGTGCTCCAGACCCTGAG CAAGATTTCAGTAAAGGATATGATGGTAAAGATGTTGTCGTTCAAAACTTACGCCAAGCTTGCTTCTTCAAAGTGGCAAA TGAAAGTGGAAAGCCTTGGCAATGGTGGGACTATGTGACTGATTTTTCAATCCGTTGCCCCATGAAAGAGAACAAATACA CAGAAGAATGCTCTGATCAAGTTATTAAATCTCTCGGTAGGTTGGGCATTTTGTGTTTCTTTGCTTATACATTGAGACTG GCTTGAATTTTTCTCTGGTTTTTGGTTTTGAATGGCTTGCAAAACATTACCCAAGTCAGCAGGAAGAGGAAACATAAAAT TCTTTTTTTTTCACACAATATATTCTTGTAATTTCTTGGTTTCAGATTTTTTTAAATAATTTAGCATCCCTGGAATTTTT CTTTTCTCTTGATTGCTGAAGCTTTCATGCATATGAGGAGAGGAACAAAACCAGATTTTTTCTGCACTGATAGAATTATC ACTGCTATGTTGACAAACTGAATAAGAAATGCTTTTATATTTGTACTCTTTTTGGATAAACTTTTCTTTTGTTTTCTCAA TGCTTTGCCAAAAATCGTTTATCCCATCATTCTAAGAAAATATATTTTTGTCAATGACTCCACTTTTCTTCCATTTACTC TTTACAGGTGTTGATCTGAAGAAGATTAAAGACTGTGTTGGGGATCCTAATGCAAATGTTGAAAACCCTGTTCTTAAGGC TGAACAGGAGGCACAGGTTGGTTTTCTAAAATGCAAATTGCAAACCTTTTTTATGTTTTTTTTTTGTTCAATTACGCCAT TATGTTTTCATAATTGTTCTGCATTTGGTTTCAGATTGGCAAAGGCTCTCGCGGTGATGTTACGATACTACCTACTCTTG TTATAAACAACAGACAGTATAGAGGTACGAGGAAGCTTTTCTAGATATCTTACCAGCTACTTAACTGTATTCTATTTTAT AATTTGTGTTTTTAACTGCTTTTAGGTCAGCTGTCAAGACCATCAGTTCTCAAGGCAATCTGTGCAGGTTTCCAAGAGAC CACTGAACCATCAATTTGCTTAACTCAAGGTCCTTTTTATCAATTTGCGATGTGTTTCGGCAGTTCTAAAGTTAAAATCA TAAATTCAGCGCTTTCTTCTGTCCCTTTTTTTTCATTTTGATGTTTTAATTTTTCAATTTTCAATTGTGTTAAAAGAATT GACTTGATTTTTATCTATATAAAATCATAGATGCATTGGCAACCAACTCAATGAAATTGAATCTTGTTTAGAAGCTAATT ATTTTAGTGATTATTCTTTGCAGACATGGAAACAAATGAGTGTTTGGAAAACAATGGTGGTTGTTGGCAGGACAAATCTT CTAATATTACTGCATGCAGGGTATTTGGTTAACTGAATCAGACACATTTTTCTGTAAAGTTTATTACGTTTTTGCTTCAT GTGAGGTCTAGTTCTTCTGATTTTAACCATCTGCATATGCTTTTCTAATTATAGGATACTTTCCGTGGAAGAGTGTGTGA ATGCCCTATTGTGCAAAATGTGAAGTTTGTAGGTGATGGATATACTCACTGTGAAGGTAAATTAGTCTTTTCAAGCTCAG ATAAATTGTTCCATTCTACATTTTCCAATCTATATATTTTAGAAACCATTTCTGCCAAAAAGAATAGAGCACAAACAGAA TATATAGGCTTTTCCAAGACTAGTGACCCTTTCAATGTAACTTCCTAAGTTCCTAACAGAATAGATATCATCATTATCAT ACCAAATTGGTGTTTGGGGCTTGTATTTCTTCCTCCTTTTGTTCCCCCTCCACTTCTGATTTCTATGTGTAGCCTCCATT TTACCAAACTACACTTTTGTCCTTGTAGTTTTTATGTCAAGGAGGCCGGGAAGTTTCTATTAAAGTTCATTTAAATTTAT TTTTCTTGCTCAATTTCACTGGGGATTTGAATTTTTTAACAGCTTCAGGAGTCTTGAGCTGTGAAGTCCACAATGGAGGT TGTTGGACGGGAGCACAAGGTGGCAGGGTTTACTCTGCTTGTCATGTAATTTATCTTGCTCATCCTTTTGTTCCTACTTT TGGTTCGGAGGAGTCGGAGTATGACCGATTATGCAAGATATTAACCATCATCTGTTTCCTTCTTGTTGTTTCTTAAATGA CAATGCAGGATGACTACATAAAAGGTTGTGAGTGTCCAACTGGGTTCAGAGGTGATGGAGTCCGGTCATGTGAAGGTACT TTTTGTTCTGACTTTTGTGATTATGGTAGTATCCAGTTATTTAGAATAAACTATAAGCCAGACAACTAAAAGAGATTTGG ATGTACATGGTTTATCACTATATCGGTATATCAATAAACTTAACACATGGAAAAGCATTATGGTTTCGTCTATATAGCTG ACTCGGCCTAGTGAAAAGGCTTGTCATTGTTGTCTAGTTAAATTATCCAATGAATGACAAATACGCATCAGATAGTTACT TCTCTTGGAGGACTAGTTAAAAATAGTTGCAAGTTATCCAGATTCTCTGGAAATACACTGGCTTTATTTTTTGTTCTGGT TATGTTGCAGATATTGATGAGTGCAATGAGAAATTGGTTTGCCAGTGCCCGGAGTGCAAATGCAAAAATACCTGGGGGAG TTATGAATGCAAATGCGGTAGTGGTTTGTTCTACTCACGAGAAAATGACTTGTGTATTGGTGAGGCTTTTTTCACTTCTC TGTCTCTTTCTGCACCTCTTTCAGAACTGCAATGTCTTTAGGGAAAAAACAACTTTGCACTTTGACTTGATAATGCTCCT TTGGCATTTCTTTTTCTATCTGTGAAGTTTCAAGTGTTTCTTTTGAAAGAATTTTGTGAGGTTCACTTTTACATTTGAAA CCAGAATGGAAAATTCTAGTGTGTTTTCCATTCCAAACTCATGGCCCATATCTTGATTGTTTTAGATACTTTTTGCATGC TATTGAGATACTATTTATGTGTTTCTAAAATTAGATTCGAACAATAAGTTTATTAATTTTTCACTATTTTGGTTCATAAA AGCAGGTAAATATACTGCTTATACTGCTTCGGTGAGTATTTGGATGATTATCCTGGTTGTGGTTGTTGCTGCTTCTGGAG GATATGCGTTTTACAAGTATAGAATCCAGGTATGATTATTGCAGACTTCGTATTTTCCCTTTTATCGTTATATCAATACT ACATTGAGACACTAATTGTTGAGAATGAGTTTTTTACTTTTTTTAATTACTAGCATTACATGCCCCCCATCGTATGCATT GTCATGACTAAATAGTTAAATTAATTCTTTAAAGATACACATTTTCATATTAGTTTTTTTATGATGAAAATTATACTAAA GATTCTTGACAGATAAAATACATATTTAGGGGCTTCAAACATATTAACTAACAATATAACTTCTTTTAAAGACTAGTTTG ATTATTTACTCCACTTTCATCCTAAAATTGTTTAATAATTTTTTGCAGAGATATATGGATTCTGAGATAAGGGCAATTAT GGCCCAATACATGCCCTTGGATAATCAACCTCAGAACCCTAGTCAAGTGCATTACGATATCTAGAAGATTTTGGGACTCT TTTTTCTGTAAATTAGAACAACCTCTACGGCTGAATGAAGATAAACGATAGCAGCTGAGCACTCATCAGCATGCTTAGTA TATTTTCATGCTTCTGCTCTTCCTTTTTTTTGTTCTTACACCTCTATCTCCTAGCGGGTCATTTGTTTCTTTGTTATTTA GCTTTGTAAATTTCAAACCAATGTGGTTTTGACATTACCCTCTGACTCTTTTTCCTGATGTAGGAACAGTATTTATATGA AATTTATGTCTTTTTTCTCCATGTTTTGGCTCCACATGTGTTGTTCAAGTGGGACTTTATACTTGTAGCATGATTGGGTC AGCTTTTTTCTCAGAATTTATTTTAGCACTTAGAAGCTACTCACATAAGCCTCTATCTGATATTAGTTATGTCTTTAGAA TCAATGTAGAAGGACTTCCAACTATGCTATTGGTGTAAGGGTAAAATTATGCTTTTTAAAAACTTTAGAATGTGAGAAAT TGTAAATTGTTTTATGATATACATAGAAGAGTGCTAGCAATACTCTTTCACAAATGGAAGTATAAGAGCTAGAAAAAGAG TTTTAAAGTGAGTGTTTATACACAATAAAGACAAGGCTGTATTTATTTATTAAACCATCATTAAAAATACAGTCCGGAAT GAGGATTATAATAGCATCTTCTATCTTTTACTACTACGCCCCTTTTTTGCACTATTTGAATCCCCTCTTAACACTACGGC AAATTCAAAGCAACACTAAACAAGCAAGAAATGCCATATATTGTCAAGTCACGCGCCTTTTACATAGCATTATTACTCTT GAGTGCAAGTTCAGTGATTCATGCCTTGTCGAATGAGCAAGATATGCGAAAGGTGATTCATGCCTTGTCGAATGAGCAAG ATATGCGAAAGATTGAGGCTTGCTGGGAAGGATAAATGAAAAAAGGGGTGGGGAAAGTCCAGGAAAGCCCTCACTTAATT GATGGGAAATTTGGGGGAAGCATTGGCTGGCCCTGCCGCATATCCCTTCCTTCATCAGAGCCTTTCCTTTAATAGTTGGG GAAAGCATTGCTGACATTCTTTCCGGCCTTATTGATTAGAGAATTCAAATCTTTT
CDS sequence (LotjaGi1g1v0457300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGATGAGCATAAAGTTGAGTTTCTTGTTGTTTGTTTGGGTTCTGCTATTGGGGAGTTGTTTGGGCAGGTTTGTGGT GGAGAAGAATAGCTTGAAGGTCACTTCTCCGAAATCTTTGAAGGGTTTATATGAATGTGCGATTGGGAATTTTGGGGTTC CTAAGTATGGAGGAACATTGATTGGTTCTGTTGTGTACCCAAATGTGAATCGGATGGGATGCAAGAACTTCACTGATTTC AATGCTTCGTTTCAGTCCAAGCCTGGAGTTTTCCCCACCTTTGTTCTTGTTGATCGTGGAGAATGCTACTTCACCTTGAA GGCGTGGAACTCACAAAATGCTGGAGCAGCAGCTATACTTGTAGCCGATGACAGGACAGAATCATTGATCACCATGGACA CTCCTGAAGAAGGGCATATTGCAAATGACGATTATGTAGAGAAGATTAGCATTCCTTCTGCTCTTATCAGTAAATCCTTG GGGGATAGCATCAAGGAGACTCTCTCCAAGGAGGAGACAGTCTACGTAAATCTTGATTGGCGAGAGGCTCTTCCACATCC CGACGAGAGAGTTGAGTATGAATTGTGGACGAATAGCAATGATGAGTGTGGGCCAAAGTGTGACAATCAAATTAATTTCA TGAAGAGCTTCAAAGGGGTAGCGCAGCTACTCGAACGGAAGGGGTTCGCTCAGTTTACCCCTCGCTATATAACTTGGTAT TGCCCTGAAGAGTTTCGCTTAAGCAAACAGTGCAAGTCTCAGTGCATAAACAACGGAAGATACTGTGCTCCAGACCCTGA GCAAGATTTCAGTAAAGGATATGATGGTAAAGATGTTGTCGTTCAAAACTTACGCCAAGCTTGCTTCTTCAAAGTGGCAA ATGAAAGTGGAAAGCCTTGGCAATGGTGGGACTATGTGACTGATTTTTCAATCCGTTGCCCCATGAAAGAGAACAAATAC ACAGAAGAATGCTCTGATCAAGTTATTAAATCTCTCGGTGTTGATCTGAAGAAGATTAAAGACTGTGTTGGGGATCCTAA TGCAAATGTTGAAAACCCTGTTCTTAAGGCTGAACAGGAGGCACAGATTGGCAAAGGCTCTCGCGGTGATGTTACGATAC TACCTACTCTTGTTATAAACAACAGACAGTATAGAGGTCAGCTGTCAAGACCATCAGTTCTCAAGGCAATCTGTGCAGGT TTCCAAGAGACCACTGAACCATCAATTTGCTTAACTCAAGACATGGAAACAAATGAGTGTTTGGAAAACAATGGTGGTTG TTGGCAGGACAAATCTTCTAATATTACTGCATGCAGGGATACTTTCCGTGGAAGAGTGTGTGAATGCCCTATTGTGCAAA ATGTGAAGTTTGTAGGTGATGGATATACTCACTGTGAAGCTTCAGGAGTCTTGAGCTGTGAAGTCCACAATGGAGGTTGT TGGACGGGAGCACAAGGTGGCAGGGTTTACTCTGCTTGTCATGATGACTACATAAAAGGTTGTGAGTGTCCAACTGGGTT CAGAGGTGATGGAGTCCGGTCATGTGAAGATATTGATGAGTGCAATGAGAAATTGGTTTGCCAGTGCCCGGAGTGCAAAT GCAAAAATACCTGGGGGAGTTATGAATGCAAATGCGGTAGTGGTTTGTTCTACTCACGAGAAAATGACTTGTGTATTGGT AAATATACTGCTTATACTGCTTCGGTGAGTATTTGGATGATTATCCTGGTTGTGGTTGTTGCTGCTTCTGGAGGATATGC GTTTTACAAGTATAGAATCCAGAGATATATGGATTCTGAGATAAGGGCAATTATGGCCCAATACATGCCCTTGGATAATC AACCTCAGAACCCTAGTCAAGTGCATTACGATATCTAG
Protein sequence (LotjaGi1g1v0457300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKMSIKLSFLLFVWVLLLGSCLGRFVVEKNSLKVTSPKSLKGLYECAIGNFGVPKYGGTLIGSVVYPNVNRMGCKNFTDF NASFQSKPGVFPTFVLVDRGECYFTLKAWNSQNAGAAAILVADDRTESLITMDTPEEGHIANDDYVEKISIPSALISKSL GDSIKETLSKEETVYVNLDWREALPHPDERVEYELWTNSNDECGPKCDNQINFMKSFKGVAQLLERKGFAQFTPRYITWY CPEEFRLSKQCKSQCINNGRYCAPDPEQDFSKGYDGKDVVVQNLRQACFFKVANESGKPWQWWDYVTDFSIRCPMKENKY TEECSDQVIKSLGVDLKKIKDCVGDPNANVENPVLKAEQEAQIGKGSRGDVTILPTLVINNRQYRGQLSRPSVLKAICAG FQETTEPSICLTQDMETNECLENNGGCWQDKSSNITACRDTFRGRVCECPIVQNVKFVGDGYTHCEASGVLSCEVHNGGC WTGAQGGRVYSACHDDYIKGCECPTGFRGDGVRSCEDIDECNEKLVCQCPECKCKNTWGSYECKCGSGLFYSRENDLCIG KYTAYTASVSIWMIILVVVVAASGGYAFYKYRIQRYMDSEIRAIMAQYMPLDNQPQNPSQVHYDI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 21 | 21 | 6.0 | – | |
| Phobius | 1 | 6 | 6 | - | – | |
| Phobius | 1 | 23 | 23 | - | – | |
| SignalP_EUK | 1 | 23 | 23 | - | – | |
| Phobius | 7 | 18 | 12 | - | – | |
| TMHMM | 7 | 26 | 20 | - | – | |
| Phobius | 19 | 23 | 5 | - | – | |
| Gene3D | 22 | 187 | 166 | 1.1E-52 | – | |
| Phobius | 24 | 568 | 545 | - | – | |
| PANTHER | 27 | 618 | 592 | 2.7E-230 | – | |
| PANTHER | 27 | 618 | 592 | 2.7E-230 | – | |
| SUPERFAMILY | 57 | 171 | 115 | 2.22E-7 | – | |
| Pfam | 62 | 164 | 103 | 1.7E-10 | ||
| Gene3D | 219 | 400 | 182 | 2.3E-5 | ||
| Gene3D | 471 | 555 | 85 | 5.2E-8 | – | |
| CDD | 517 | 548 | 32 | 9.85194E-5 | – | |
| SMART | 517 | 559 | 43 | 0.0013 | ||
| ProSitePatterns | 517 | 543 | 27 | - | ||
| TMHMM | 567 | 589 | 23 | - | – | |
| Phobius | 569 | 589 | 21 | - | – | |
| Phobius | 590 | 625 | 36 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Calcium ion binding | Interacting selectively and non-covalently with calcium ions (Ca2+). |
Expression pattern of LotjaGi1g1v0457300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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