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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0457300 |
| Transcript ID | LotjaGi1g1v0457300.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Vacuolar sorting receptor; TAIR: AT3G52850.1 vacuolar sorting receptor homolog 1; Swiss-Prot: sp|P93026|VSR1_ARATH Vacuolar-sorting receptor 1; TrEMBL-Plants: tr|G7KY61|G7KY61_MEDTR Vacuolar sorting receptor; Found in the gene: LotjaGi1g1v0457300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:96061450..96066664) extracted from Lotus japonicus Gifu genome v1.2.
AAGATGAGCATAAAGTTGAGTTTCTTGTTGTTTGTTTGGGTTCTGCTATTGGGGAGTTGTTTGGGCAGGTTTGTGGTGGA GAAGAATAGCTTGAAGGTCACTTCTCCGAAATCTTTGAAGGGTTTATATGAATGTGCGATTGGGAATTTTGGGGTTCCTA AGTATGGAGGAACATTGATTGGTTCTGTTGTGTACCCAAATGTGAATCGGATGGGATGCAAGAACTTCACTGATTTCAAT GCTTCGTTTCAGTCCAAGCCTGGAGTTTTCCCCACCTTTGTTCTTGTTGATCGTGGAGGTGAGCTTCTAATTGGTCTTTC TTAACTCTTCAGCTTGTGAATAACCCATAAATTTATAAGGGAAAAAAATGATCAATGTTTTGTAGTAAATCACTTGGGTT TGGTTTAGTTTAGTGGTTGATTTTGTTTGTATAACATGGCGTTTTTTAAGGAGGCAGCTACTTTTTCAAGTTCCATACTG TATTTTGATTATGGTAATTTAAATATGTTGTGCATTTTGGAATTGCTTTCTTTTCTTTATGATATGGAAAGTTGCCGTTT ACTAATCAAATAATTGAAAGGCCATTGTTATACTATTTTTGGAATATTCTGGTTTTAAGTTTTTAAGTTGGGACCATAAA CACTTTAGGTCTTCCCAGTATGATGTGACTAGGTAATTGTTGCAAAAGATTGTGTAAATGTTGCATTTATTGTTCAGGTT AAGGATGCATAATCTCTCTTGCCTTTGATTTAATGTGAAGTTTATTTATTTATTGGTTTGGAGTATGAGAATAGAAACTC TGCCTATGCTTTTGCATAGCCGGTCGTAAGTCCAGATAAAAGAGGAAGGTTGTGTTAGGCTTTAGGAAACCAACGTAAAC ACACCATATCTTTAATATTGATATGTGATCCATATAGCCGACTTCACCTAGTGAGATAAGGCTTTGGTTACGGTTTTGGA GTATGGGAATTGAGATAAGGGGCACTCTATTGTAGCAGAACGTGTTCTCTGGTTAACCTATTCTATCTTTGTAGACTGTA TGTTGCCACACTGATGATATTGCATAGATCATTAGGATCACAACCACTCAGAAAATGACTTTGAAAATTTATTCTCTGGT CTTTTTTGTAGAATGCTACTTCACCTTGAAGGCGTGGAACTCACAAAATGCTGGAGCAGCAGCTATACTTGTAGCCGATG ACAGGACAGAATCATTGATCACCATGGACACTCCTGAAGAAGGGCATATTGCAAATGACGATTATGTAGAGAAGATTAGC ATTCCTTCTGCTCTTATCAGTAAATCCTTGGGGGATAGCATCAAGGAGACTCTCTCCAAGGAGGAGACAGTCTACGTAAA TCTTGATTGGCGAGAGGCTCTTCCACATCCCGACGAGAGAGTTGAGTATGAATTGTGGACGAATAGCAATGATGAGTGTG GGCCAAAGTGTGACAATCAAATTAATTTCATGAAGAGCTTCAAAGGGGTAGCGCAGCTACTCGAACGGAAGGGGTTCGCT CAGTTTACCCCTCGCTATATAACTTGGTATTGCCCTGAAGAGTTTCGCTTAAGCAAACAGTGCAAGTCTCAGTGCATAAA CAACGGAAGATACTGTGCTCCAGACCCTGAGCAAGATTTCAGTAAAGGATATGATGGTAAAGATGTTGTCGTTCAAAACT TACGCCAAGCTTGCTTCTTCAAAGTGGCAAATGAAAGTGGAAAGCCTTGGCAATGGTGGGACTATGTGACTGATTTTTCA ATCCGTTGCCCCATGAAAGAGAACAAATACACAGAAGAATGCTCTGATCAAGTTATTAAATCTCTCGGTAGGTTGGGCAT TTTGTGTTTCTTTGCTTATACATTGAGACTGGCTTGAATTTTTCTCTGGTTTTTGGTTTTGAATGGCTTGCAAAACATTA CCCAAGTCAGCAGGAAGAGGAAACATAAAATTCTTTTTTTTTCACACAATATATTCTTGTAATTTCTTGGTTTCAGATTT TTTTAAATAATTTAGCATCCCTGGAATTTTTCTTTTCTCTTGATTGCTGAAGCTTTCATGCATATGAGGAGAGGAACAAA ACCAGATTTTTTCTGCACTGATAGAATTATCACTGCTATGTTGACAAACTGAATAAGAAATGCTTTTATATTTGTACTCT TTTTGGATAAACTTTTCTTTTGTTTTCTCAATGCTTTGCCAAAAATCGTTTATCCCATCATTCTAAGAAAATATATTTTT GTCAATGACTCCACTTTTCTTCCATTTACTCTTTACAGGTGTTGATCTGAAGAAGATTAAAGACTGTGTTGGGGATCCTA ATGCAAATGTTGAAAACCCTGTTCTTAAGGCTGAACAGGAGGCACAGGTTGGTTTTCTAAAATGCAAATTGCAAACCTTT TTTATGTTTTTTTTTTGTTCAATTACGCCATTATGTTTTCATAATTGTTCTGCATTTGGTTTCAGATTGGCAAAGGCTCT CGCGGTGATGTTACGATACTACCTACTCTTGTTATAAACAACAGACAGTATAGAGGTACGAGGAAGCTTTTCTAGATATC TTACCAGCTACTTAACTGTATTCTATTTTATAATTTGTGTTTTTAACTGCTTTTAGGTCAGCTGTCAAGACCATCAGTTC TCAAGGCAATCTGTGCAGGTTTCCAAGAGACCACTGAACCATCAATTTGCTTAACTCAAGGTCCTTTTTATCAATTTGCG ATGTGTTTCGGCAGTTCTAAAGTTAAAATCATAAATTCAGCGCTTTCTTCTGTCCCTTTTTTTTCATTTTGATGTTTTAA TTTTTCAATTTTCAATTGTGTTAAAAGAATTGACTTGATTTTTATCTATATAAAATCATAGATGCATTGGCAACCAACTC AATGAAATTGAATCTTGTTTAGAAGCTAATTATTTTAGTGATTATTCTTTGCAGACATGGAAACAAATGAGTGTTTGGAA AACAATGGTGGTTGTTGGCAGGACAAATCTTCTAATATTACTGCATGCAGGGTATTTGGTTAACTGAATCAGACACATTT TTCTGTAAAGTTTATTACGTTTTTGCTTCATGTGAGGTCTAGTTCTTCTGATTTTAACCATCTGCATATGCTTTTCTAAT TATAGGATACTTTCCGTGGAAGAGTGTGTGAATGCCCTATTGTGCAAAATGTGAAGTTTGTAGGTGATGGATATACTCAC TGTGAAGGTAAATTAGTCTTTTCAAGCTCAGATAAATTGTTCCATTCTACATTTTCCAATCTATATATTTTAGAAACCAT TTCTGCCAAAAAGAATAGAGCACAAACAGAATATATAGGCTTTTCCAAGACTAGTGACCCTTTCAATGTAACTTCCTAAG TTCCTAACAGAATAGATATCATCATTATCATACCAAATTGGTGTTTGGGGCTTGTATTTCTTCCTCCTTTTGTTCCCCCT CCACTTCTGATTTCTATGTGTAGCCTCCATTTTACCAAACTACACTTTTGTCCTTGTAGTTTTTATGTCAAGGAGGCCGG GAAGTTTCTATTAAAGTTCATTTAAATTTATTTTTCTTGCTCAATTTCACTGGGGATTTGAATTTTTTAACAGCTTCAGG AGTCTTGAGCTGTGAAGTCCACAATGGAGGTTGTTGGACGGGAGCACAAGGTGGCAGGGTTTACTCTGCTTGTCATGTAA TTTATCTTGCTCATCCTTTTGTTCCTACTTTTGGTTCGGAGGAGTCGGAGTATGACCGATTATGCAAGATATTAACCATC ATCTGTTTCCTTCTTGTTGTTTCTTAAATGACAATGCAGGATGACTACATAAAAGGTTGTGAGTGTCCAACTGGGTTCAG AGGTGATGGAGTCCGGTCATGTGAAGGTACTTTTTGTTCTGACTTTTGTGATTATGGTAGTATCCAGTTATTTAGAATAA ACTATAAGCCAGACAACTAAAAGAGATTTGGATGTACATGGTTTATCACTATATCGGTATATCAATAAACTTAACACATG GAAAAGCATTATGGTTTCGTCTATATAGCTGACTCGGCCTAGTGAAAAGGCTTGTCATTGTTGTCTAGTTAAATTATCCA ATGAATGACAAATACGCATCAGATAGTTACTTCTCTTGGAGGACTAGTTAAAAATAGTTGCAAGTTATCCAGATTCTCTG GAAATACACTGGCTTTATTTTTTGTTCTGGTTATGTTGCAGATATTGATGAGTGCAATGAGAAATTGGTTTGCCAGTGCC CGGAGTGCAAATGCAAAAATACCTGGGGGAGTTATGAATGCAAATGCGGTAGTGGTTTGTTCTACTCACGAGAAAATGAC TTGTGTATTGGTGAGGCTTTTTTCACTTCTCTGTCTCTTTCTGCACCTCTTTCAGAACTGCAATGTCTTTAGGGAAAAAA CAACTTTGCACTTTGACTTGATAATGCTCCTTTGGCATTTCTTTTTCTATCTGTGAAGTTTCAAGTGTTTCTTTTGAAAG AATTTTGTGAGGTTCACTTTTACATTTGAAACCAGAATGGAAAATTCTAGTGTGTTTTCCATTCCAAACTCATGGCCCAT ATCTTGATTGTTTTAGATACTTTTTGCATGCTATTGAGATACTATTTATGTGTTTCTAAAATTAGATTCGAACAATAAGT TTATTAATTTTTCACTATTTTGGTTCATAAAAGCAGGTAAATATACTGCTTATACTGCTTCGGTGAGTATTTGGATGATT ATCCTGGTTGTGGTTGTTGCTGCTTCTGGAGGATATGCGTTTTACAAGTATAGAATCCAGGTATGATTATTGCAGACTTC GTATTTTCCCTTTTATCGTTATATCAATACTACATTGAGACACTAATTGTTGAGAATGAGTTTTTTACTTTTTTTAATTA CTAGCATTACATGCCCCCCATCGTATGCATTGTCATGACTAAATAGTTAAATTAATTCTTTAAAGATACACATTTTCATA TTAGTTTTTTTATGATGAAAATTATACTAAAGATTCTTGACAGATAAAATACATATTTAGGGGCTTCAAACATATTAACT AACAATATAACTTCTTTTAAAGACTAGTTTGATTATTTACTCCACTTTCATCCTAAAATTGTTTAATAATTTTTTGCAGA GATATATGGATTCTGAGATAAGGGCAATTATGGCCCAATACATGCCCTTGGATAATCAACCTCAGAACCCTAGTCAAGTG CATTACGATATCTAG
CDS sequence (LotjaGi1g1v0457300.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGCATAAAGTTGAGTTTCTTGTTGTTTGTTTGGGTTCTGCTATTGGGGAGTTGTTTGGGCAGGTTTGTGGTGGAGAA GAATAGCTTGAAGGTCACTTCTCCGAAATCTTTGAAGGGTTTATATGAATGTGCGATTGGGAATTTTGGGGTTCCTAAGT ATGGAGGAACATTGATTGGTTCTGTTGTGTACCCAAATGTGAATCGGATGGGATGCAAGAACTTCACTGATTTCAATGCT TCGTTTCAGTCCAAGCCTGGAGTTTTCCCCACCTTTGTTCTTGTTGATCGTGGAGAATGCTACTTCACCTTGAAGGCGTG GAACTCACAAAATGCTGGAGCAGCAGCTATACTTGTAGCCGATGACAGGACAGAATCATTGATCACCATGGACACTCCTG AAGAAGGGCATATTGCAAATGACGATTATGTAGAGAAGATTAGCATTCCTTCTGCTCTTATCAGTAAATCCTTGGGGGAT AGCATCAAGGAGACTCTCTCCAAGGAGGAGACAGTCTACGTAAATCTTGATTGGCGAGAGGCTCTTCCACATCCCGACGA GAGAGTTGAGTATGAATTGTGGACGAATAGCAATGATGAGTGTGGGCCAAAGTGTGACAATCAAATTAATTTCATGAAGA GCTTCAAAGGGGTAGCGCAGCTACTCGAACGGAAGGGGTTCGCTCAGTTTACCCCTCGCTATATAACTTGGTATTGCCCT GAAGAGTTTCGCTTAAGCAAACAGTGCAAGTCTCAGTGCATAAACAACGGAAGATACTGTGCTCCAGACCCTGAGCAAGA TTTCAGTAAAGGATATGATGGTAAAGATGTTGTCGTTCAAAACTTACGCCAAGCTTGCTTCTTCAAAGTGGCAAATGAAA GTGGAAAGCCTTGGCAATGGTGGGACTATGTGACTGATTTTTCAATCCGTTGCCCCATGAAAGAGAACAAATACACAGAA GAATGCTCTGATCAAGTTATTAAATCTCTCGGTGTTGATCTGAAGAAGATTAAAGACTGTGTTGGGGATCCTAATGCAAA TGTTGAAAACCCTGTTCTTAAGGCTGAACAGGAGGCACAGATTGGCAAAGGCTCTCGCGGTGATGTTACGATACTACCTA CTCTTGTTATAAACAACAGACAGTATAGAGGTCAGCTGTCAAGACCATCAGTTCTCAAGGCAATCTGTGCAGGTTTCCAA GAGACCACTGAACCATCAATTTGCTTAACTCAAGACATGGAAACAAATGAGTGTTTGGAAAACAATGGTGGTTGTTGGCA GGACAAATCTTCTAATATTACTGCATGCAGGGATACTTTCCGTGGAAGAGTGTGTGAATGCCCTATTGTGCAAAATGTGA AGTTTGTAGGTGATGGATATACTCACTGTGAAGCTTCAGGAGTCTTGAGCTGTGAAGTCCACAATGGAGGTTGTTGGACG GGAGCACAAGGTGGCAGGGTTTACTCTGCTTGTCATGATGACTACATAAAAGGTTGTGAGTGTCCAACTGGGTTCAGAGG TGATGGAGTCCGGTCATGTGAAGATATTGATGAGTGCAATGAGAAATTGGTTTGCCAGTGCCCGGAGTGCAAATGCAAAA ATACCTGGGGGAGTTATGAATGCAAATGCGGTAGTGGTTTGTTCTACTCACGAGAAAATGACTTGTGTATTGGTAAATAT ACTGCTTATACTGCTTCGGTGAGTATTTGGATGATTATCCTGGTTGTGGTTGTTGCTGCTTCTGGAGGATATGCGTTTTA CAAGTATAGAATCCAGAGATATATGGATTCTGAGATAAGGGCAATTATGGCCCAATACATGCCCTTGGATAATCAACCTC AGAACCCTAGTCAAGTGCATTACGATATCTAG
Protein sequence (LotjaGi1g1v0457300.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSIKLSFLLFVWVLLLGSCLGRFVVEKNSLKVTSPKSLKGLYECAIGNFGVPKYGGTLIGSVVYPNVNRMGCKNFTDFNA SFQSKPGVFPTFVLVDRGECYFTLKAWNSQNAGAAAILVADDRTESLITMDTPEEGHIANDDYVEKISIPSALISKSLGD SIKETLSKEETVYVNLDWREALPHPDERVEYELWTNSNDECGPKCDNQINFMKSFKGVAQLLERKGFAQFTPRYITWYCP EEFRLSKQCKSQCINNGRYCAPDPEQDFSKGYDGKDVVVQNLRQACFFKVANESGKPWQWWDYVTDFSIRCPMKENKYTE ECSDQVIKSLGVDLKKIKDCVGDPNANVENPVLKAEQEAQIGKGSRGDVTILPTLVINNRQYRGQLSRPSVLKAICAGFQ ETTEPSICLTQDMETNECLENNGGCWQDKSSNITACRDTFRGRVCECPIVQNVKFVGDGYTHCEASGVLSCEVHNGGCWT GAQGGRVYSACHDDYIKGCECPTGFRGDGVRSCEDIDECNEKLVCQCPECKCKNTWGSYECKCGSGLFYSRENDLCIGKY TAYTASVSIWMIILVVVVAASGGYAFYKYRIQRYMDSEIRAIMAQYMPLDNQPQNPSQVHYDI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 1 | 19 | 19 | 5.0 | – | |
| Phobius | 1 | 4 | 4 | - | – | |
| SignalP_EUK | 1 | 21 | 21 | - | – | |
| Phobius | 1 | 21 | 21 | - | – | |
| Phobius | 5 | 16 | 12 | - | – | |
| TMHMM | 7 | 25 | 19 | - | – | |
| Phobius | 17 | 21 | 5 | - | – | |
| Gene3D | 20 | 185 | 166 | 1.1E-52 | – | |
| Phobius | 22 | 566 | 545 | - | – | |
| PANTHER | 25 | 616 | 592 | 2.7E-230 | – | |
| PANTHER | 25 | 616 | 592 | 2.7E-230 | – | |
| SUPERFAMILY | 55 | 169 | 115 | 2.22E-7 | – | |
| Pfam | 60 | 162 | 103 | 1.7E-10 | ||
| Gene3D | 217 | 398 | 182 | 2.3E-5 | ||
| Gene3D | 469 | 553 | 85 | 5.2E-8 | – | |
| ProSitePatterns | 515 | 541 | 27 | - | ||
| CDD | 515 | 546 | 32 | 1.04177E-4 | – | |
| SMART | 515 | 557 | 43 | 0.0013 | ||
| TMHMM | 565 | 587 | 23 | - | – | |
| Phobius | 567 | 587 | 21 | - | – | |
| Phobius | 588 | 623 | 36 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Calcium ion binding | Interacting selectively and non-covalently with calcium ions (Ca2+). |
Expression pattern of LotjaGi1g1v0457300.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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