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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0470300 |
| Transcript ID | LotjaGi1g1v0470300.1 |
| Related isoforms 4 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | F-box protein family; TAIR: AT3G06240.1 F-box family protein; Swiss-Prot: sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240; TrEMBL-Plants: tr|A0A0R0JBR7|A0A0R0JBR7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0470300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:98071565..98074081) extracted from Lotus japonicus Gifu genome v1.2.
GAATTATTTCTGAAAACTATTTTAAAAACTGAAAACTAAAACTGCTATCAAACAGACCCTAAGCTATCACTTTTTAAATT TAAGCAATCAGATTTACCACCTCATGTTGCTCTAATGCTACTCCAAAATAAGTTATCCAACTTGATTATTCCAGGGTTCA AAGGAAGGAGCACGGAGGAGCGCCCTTCGCTCTCTTCGATTCTTCTCCCTGACGAATTGATTGAAGCGATTCTGCTGCGA CTACCGGTGAGTTGTCTTCTCCGTTTCAAATCCGTCTCAAAATCATGGTTGTCTCTAATTTCCAATCCCCAATTTGCCAA ATCCCACTTTGACCTAGCTGCTGCACCCACGCACCGTCTCCTCCTGAATTGCACTCGTGAACTCCGATTCCAGTCCTTAG ACGTTGATTCATCGCCACCCAACAATGAAACTGCAGTGCTCAAATACCTCCGTGAAGAGTTTGATGGTTATGGTAGAGAT ATAGATTTACATTACAACCCCAAACTTGTAGTCCTGGGTTCTTGCAGAGGGTTTCTATTTTTACTTTCAAACAATTTTCC AGCTCATGATTTCGTTGTGTGTAATCCGTTAACGGGTGAGCATAGACGAATTCCATCATCTACTAGTTTTAGTTACTCTT ATTCTTCACTGTATGGTATTGGGTATGATCAATCAACTGATGACTACTTGCTAGTTTCTATAAGATCGAATGTTCGTGAT CCTAGAATTGAGGTTTTTTCGTTGAAAACCAATTTACCCAGCTCGCTCACACTGGATAATGAATATCAGTCTCTCGGTTC TGATTTTCAACACGGTTTGTTCTTAAATGGGTCTCTCATTGGTTGGTTACCGTTACGTCTAGTGATACCAATCCTCATGT ACTTCTTGCTTTTGATTTGGTTAACAAGAGTTCATCGGAGATTGCTCTGTCACCTGATTTAGCTCGGCAGTTGAAGAATG AACCATGTGATTTAAGAGAGATGGCAGGATGTCTTGCTCTGTGTCCTGATCTGTGTTACACTACTTATAGTGGCATGATT GAAATATGGATAATGAAAGAGTATAAAGTGCAATCATCTTGGACTAAGATTGTTTTCTCTACTCATGACGTCCCTCACAT ATACGACTTTTTTCCAATATGTTTCACTAAATGTGGTGACATTTTTGGATCAGATGAGACTGGAAGATTATTGAGATTCA ACGATAAAGGAAAGCTGCTTGCAGTTTGGCCGTGGGAGAGCAGATATCGTCTATTATATAGTCGTATGTATACAACAAGT TTACTGTCACTCCCTAGTTAATTTGTGGACCAACAAAAAACAGACATGAAGTATCAATGTATGTAATTCTTCAAACCTTT TCACCATTTTCGTGCTATTACTATTTTTACCTCCAAATGCATGCTTACATGAAAATGATTCAGGATTACTGAATTCACTG TTGGATAGGGAAAATATTTTGTCTTGCTTGCTCAGAATAATGAAAGGCATTTTCGGTGGAAAATTATGATCCAGAGTGAA ATAACAACTTTCAAACTACTATCTCAACATTTGTGGTTTAATTGCTGAGAAGTTAGATGCTTGCAGTGGTAAAACATGAT CTGTAAGTAATGTTTGCTTGATTCATGTGGTAAATGTACCATAGCTTTTGGGCTTTGTTTTCCTTTCATATTTTGACAGT AGGGCTGTTGAGTTGCAGAGTGTACTTATGGCTAAAAAGGACTGAGTAAATATTTGTTTAATTTATAGGGAAGGGATGCC TTATTCTATAATTTTAACCGGAATTAAGAGTATCTACCTTTCATTCAGACCGGTGTATTTGTAGTGTTTGCTGAGACATA AGGAAATTAAAATGGCAATTTGTTGAACTCTGCTGTATTGGACAATGTTTTTTAAGTATTCTATTTTCGGTACTATTCGA TAAACTGTGCAAGAGTGTTTTTCATAAAATATTACATTGCCTTTTTACTACTCAATCATAAAGTTAAGTCATTTATTGCT CTTGGCCATTTTCTGATTAAAACTTTTGGATGTTCTGGTCCCTAATTAATTGGTATAAATCTGTTTGTAAACCACCAAGT GATGTATTGGTATTGCTAGTTTAAGGGAAGGTGGTTTTTCAAGTGAATGTAATGTTTGTTGTAGCTGAAATACACTGAAT GTCATTGTGTTTGTTGCAGTCACTGATTCTCCTGAGGCTCTGTTGGTAATAGCCACCCCAATGAAATTTGCTCATTCAGC ATATCCAGCAGGCGATGATAATTTGGACCTATTGTAATGTTTGACCTATTGTCTGCTCTTTTTGTCTTAGATAATGACAT TTTAGATGATAAGTATTAAAACTTTTCAATTTTATGTAAGGTGTTTGATGCGCAGTTGAAGGAGAAATCAATGATGGTTG TTAGCATGTACCTCTCTATATTAAATTTTACTTTTAGACAATGCTAATTGGTTCCGAAATTCTATCGTTTTCTTTTGAAT TTCGTTTTTTCGTATGAGTTCCCTGATGTAGGAGGGC
CDS sequence (LotjaGi1g1v0470300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTACTCCAAAATAAGTTATCCAACTTGATTATTCCAGGGTTCAAAGGAAGGAGCACGGAGGAGCGCCCTTCGCTCTC TTCGATTCTTCTCCCTGACGAATTGATTGAAGCGATTCTGCTGCGACTACCGGTGAGTTGTCTTCTCCGTTTCAAATCCG TCTCAAAATCATGGTTGTCTCTAATTTCCAATCCCCAATTTGCCAAATCCCACTTTGACCTAGCTGCTGCACCCACGCAC CGTCTCCTCCTGAATTGCACTCGTGAACTCCGATTCCAGTCCTTAGACGTTGATTCATCGCCACCCAACAATGAAACTGC AGTGCTCAAATACCTCCGTGAAGAGTTTGATGGTTATGGTAGAGATATAGATTTACATTACAACCCCAAACTTGTAGTCC TGGGTTCTTGCAGAGGGTTTCTATTTTTACTTTCAAACAATTTTCCAGCTCATGATTTCGTTGTGTGTAATCCGTTAACG GGTGAGCATAGACGAATTCCATCATCTACTAGTTTTAGTTACTCTTATTCTTCACTGTATGGTATTGGGTATGATCAATC AACTGATGACTACTTGCTAGTTTCTATAAGATCGAATGTTCGTGATCCTAGAATTGAGGTTTTTTCGTTGAAAACCAATT TACCCAGCTCGCTCACACTGGATAATGAATATCAGTCTCTCGGTTCTGATTTTCAACACGGTTTGTTCTTAAATGGGTCT CTCATTGGTTGGTTACCGTTACGTCTAGTGATACCAATCCTCATGTACTTCTTGCTTTTGATTTGGTTAACAAGAGTTCA TCGGAGATTGCTCTGTCACCTGATTTAG
Protein sequence (LotjaGi1g1v0470300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLLQNKLSNLIIPGFKGRSTEERPSLSSILLPDELIEAILLRLPVSCLLRFKSVSKSWLSLISNPQFAKSHFDLAAAPTH RLLLNCTRELRFQSLDVDSSPPNNETAVLKYLREEFDGYGRDIDLHYNPKLVVLGSCRGFLFLLSNNFPAHDFVVCNPLT GEHRRIPSSTSFSYSYSSLYGIGYDQSTDDYLLVSIRSNVRDPRIEVFSLKTNLPSSLTLDNEYQSLGSDFQHGLFLNGS LIGWLPLRLVIPILMYFLLLIWLTRVHRRLLCHLI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 240 | 240 | - | – | |
| Gene3D | 20 | 115 | 96 | 5.0E-7 | – | |
| ProSiteProfiles | 25 | 71 | 47 | 9.656 | ||
| PANTHER | 30 | 249 | 220 | 1.2E-41 | – | |
| PANTHER | 30 | 249 | 220 | 1.2E-41 | – | |
| SUPERFAMILY | 30 | 84 | 55 | 3.66E-13 | ||
| Pfam | 31 | 67 | 37 | 5.7E-8 | ||
| SMART | 31 | 71 | 41 | 5.1E-6 | ||
| TIGRFAM | 136 | 241 | 106 | 2.6E-12 | ||
| Phobius | 241 | 263 | 23 | - | – | |
| TMHMM | 241 | 263 | 23 | - | – | |
| Phobius | 264 | 275 | 12 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0470300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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