Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
Field | Value |
---|---|
Gene ID | LotjaGi1g1v0470300 |
Transcript ID | LotjaGi1g1v0470300.3 |
Related isoforms 4 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | F-box protein family; TAIR: AT3G06240.1 F-box family protein; Swiss-Prot: sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240; TrEMBL-Plants: tr|A0A0R0JBR7|A0A0R0JBR7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0470300 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:98071673..98079808) extracted from Lotus japonicus Gifu genome v1.2.
GCTCTAATGCTACTCCAAAATAAGTTATCCAACTTGATTATTCCAGGGTTCAAAGGAAGGAGCACGGAGGAGCGCCCTTC GCTCTCTTCGATTCTTCTCCCTGACGAATTGATTGAAGCGATTCTGCTGCGACTACCGGTGAGTTGTCTTCTCCGTTTCA AATCCGTCTCAAAATCATGGTTGTCTCTAATTTCCAATCCCCAATTTGCCAAATCCCACTTTGACCTAGCTGCTGCACCC ACGCACCGTCTCCTCCTGAATTGCACTCGTGAACTCCGATTCCAGTCCTTAGACGTTGATTCATCGCCACCCAACAATGA AACTGCAGTGCTCAAATACCTCCGTGAAGAGTTTGATGGTTATGGTAGAGATATAGATTTACATTACAACCCCAAACTTG TAGTCCTGGGTTCTTGCAGAGGGTTTCTATTTTTACTTTCAAACAATTTTCCAGCTCATGATTTCGTTGTGTGTAATCCG TTAACGGGTGAGCATAGACGAATTCCATCATCTACTAGTTTTAGTTACTCTTATTCTTCACTGTATGGTATTGGGTATGA TCAATCAACTGATGACTACTTGCTAGTTTCTATAAGATCGAATGTTCGTGATCCTAGAATTGAGGTTTTTTCGTTGAAAA CCAATTTACCCAGCTCGCTCACACTGGATAATGAATATCAGTCTCTCGGTTCTGATTTTCAACACGGTTTGTTCTTAAAT GGGTCTCTCATTGGTTGGTTACCGTTACGTCTAGTGATACCAATCCTCATGTACTTCTTGCTTTTGATTTGGTTAACAAG AGTTCATCGGAGATTGCTCTGTCACCTGATTTAGCTCGGCAGTTGAAGAATGAACCATGTGATTTAAGAGAGATGGCAGG ATGTCTTGCTCTGTGTCCTGATCTGTGTTACACTACTTATAGTGGCATGATTGAAATATGGATAATGAAAGAGTATAAAG TGCAATCATCTTGGACTAAGATTGTTTTCTCTACTCATGACGTCCCTCACATATACGACTTTTTTCCAATATGTTTCACT AAATGTGGTGACATTTTTGGATCAGATGAGACTGGAAGATTATTGAGATTCAACGATAAAGGAAAGCTGCTTGCAGTTTG GCCGTGGGAGAGCAGATATCGTCTATTATATAGTCGTATGTATACAACAAGTTTACTGTCACTCCCTAGTTAATTTGTGG ACCAACAAAAAACAGACATGAAGTATCAATGTATGTAATTCTTCAAACCTTTTCACCATTTTCGTGCTATTACTATTTTT ACCTCCAAATGCATGCTTACATGAAAATGATTCAGGATTACTGAATTCACTGTTGGATAGGGAAAATATTTTGTCTTGCT TGCTCAGAATAATGAAAGGCATTTTCGGTGGAAAATTATGATCCAGAGTGAAATAACAACTTTCAAACTACTATCTCAAC ATTTGTGGTTTAATTGCTGAGAAGTTAGATGCTTGCAGTGGTAAAACATGATCTGTAAGTAATGTTTGCTTGATTCATGT GGTAAATGTACCATAGCTTTTGGGCTTTGTTTTCCTTTCATATTTTGACAGTAGGGCTGTTGAGTTGCAGAGTGTACTTA TGGCTAAAAAGGACTGAGTAAATATTTGTTTAATTTATAGGGAAGGGATGCCTTATTCTATAATTTTAACCGGAATTAAG AGTATCTACCTTTCATTCAGACCGGTGTATTTGTAGTGTTTGCTGAGACATAAGGAAATTAAAATGGCAATTTGTTGAAC TCTGCTGTATTGGACAATGTTTTTTAAGTATTCTATTTTCGGTACTATTCGATAAACTGTGCAAGAGTGTTTTTCATAAA ATATTACATTGCCTTTTTACTACTCAATCATAAAGTTAAGTCATTTATTGCTCTTGGCCATTTTCTGATTAAAACTTTTG GATGTTCTGGTCCCTAATTAATTGGTATAAATCTGTTTGTAAACCACCAAGTGATGTATTGGTATTGCTAGTTTAAGGGA AGGTGGTTTTTCAAGTGAATGTAATGTTTGTTGTAGCTGAAATACACTGAATGTCATTGTGTTTGTTGCAGTCACTGATT CTCCTGAGGCTCTGTTGGTAATAGCCACCCCAATGAAATTTGCTCATTCAGCATATCCAGCAGGCGATGATAATTTGGAC CTATTGTAATGTTTGACCTATTGTCTGCTCTTTTTGTCTTAGATAATGACATTTTAGATGATAAGTATTAAAACTTTTCA ATTTTATGTAAGGTGTTTGATGCGCAGTTGAAGGAGAAATCAATGATGGTTGTTAGCATGTACCTCTCTATATTAAATTT TACTTTTAGACAATGCTAATTGGTTCCGAAATTCTATCGTTTTCTTTTGAATTTCGTTTTTTCGTATGAGTTCCCTGATG TAGGAGGGCCCTTTTTTTTATAGGCTTAGGAGAGCCTTTGTTATCCTCCAACCACGGTTTCTTATTTTACTTTTGGTTGA GTTTCATTATATCTCATATATTTATATTATTTCAAAGTCATGTCCTTGTTCAAAGTCATTAATTAAAAAAAATATAATTT TCTGGTAAAAAAACAAGTAGAAAGAGAATAAATAACGTTGTTAAAATTTTGTACAACGACTAGTATTAGAGATACTCTTA GACTTTTAAGGGTCAAACGTGAAAAATGTCCCTGAACTTTAGCCGATATTTGATTTTCGTCCATTGCCGAAAAATCTTCT TATGGAGCCCTCAAATTACGTTTTTTGTTTGGAAATCGTCTTTGTCATCAAATCTTCATCGACGACAAGATGGTTTCCAA ACAAAAAACGTAGTTTGAGGATGTTTATATGAAGATTTTCCGGTGACTGGTGAGGGACGAAAATCAAATCTCGGTCAAAG TTCAAGGGCGGTTTTCACGTTAAACCTGACTTTTAAAATGATGTGGCACGGTGAGTCCCACATTTAATACACATAAGAGA CACATGGATTTGGATCCCCTCACATGACCTAAACCATTAATTCTATTTTAATGAAATTTGTACCCTTAATGGTTATATAG AGAGAAAATTAAAATTGTGTGAGAATTAATACTGACCATCAGATTATATTAAAAAATAGGCTTAATACATCAGAAGGCCC CTGAATTTATAAAAGGAATCAGTTCCAGGGCCTGGAAAATTTTCGCATCAATTAAGGTCAAATGCTGTCAAACCTCAATT TTGTCCTAGTTATCAATTACACGTGGCTTTTATAATTATTTTTTAATTAAAGAATTATAATACTTTATTTTTTAAATTTC AAATCCTTTATTTAAGCAGAAATTCCTAATCTAATAATAACAATTAGGAATTTCTGATCTAATAACCCTTAACTAAATAA TAACCTAATCTAATAATAACAAATTCCTAATCTAATAATAACAATTCAGCCCCAAATTGAACCCTCCTAAGTGATCCTCA GCCCCAATTTGAACCACAGCAGGTAAAAGACAGCTTCATAACCACAAGAAGATGTGCAATTACCAGTGCAGAGAAGCACT ATCATTTGCAGAGAAGCTAGTGCAATGGAAGAAGATAGAACCACCATCAAAGAAATTAAAACCACAAAAATCCATTCCCT TCAAACCCAAGCCTTCAATCACAACCACTGCATAACTAACTGGACCCAGAATCTCAAGCTTCTAAATCAGAACAACAACC ACTTCCCCATTCACTGAATCTTCAAGCAAACAGATCTCCCTAAATCAAAACCAGAAAGAGACGAAGAAGAAAGAAACCTC TTCTCAATCACCACAAAGCCAATCATGTTCCAATCAAACCCAAGCTAACCTGACCTTCCCTTCTGTCGTCCTCCTCTTCC ATGCGCTGTCGCTCCTCACCGTTGCAACCACCGCACTACCGTGAGCCTTGCCATCTCGCCGCGCCGTCGAGACCTCCATC GCACCACCATCTTCAAATCGTGGATCTCTTCAAGATCTCGGTTTTTTCTTCCCAGCCTCCGTCGATTCGTTAGCAACTGT GGCCTCCATCGCCGACCGATTGTGCGAAAACTTTCTTCCTTCTCTCCTTCTCGCCAGGGACCAGTTAGAAGGTGGCGGCT GGTTGGAGGAAGAGGAAGGTCGGCTGGTTGGAAGAAGATAGTGAAGAGAGGAAGGAGGAGAGAGTTTGATTAGGTTTTCA AATTAGGTTAGGTTTTTTCAGGTTAGATTAAGTTTTTTTTTAATGACTTGGAATTAATAATAAAGGAATAATAATTATTG GTTTTTAAAAATAATTATAAAAGCCACGCGAAAATGTCATGTCTGTTAAAATTTAGACACATCGGCATCAGACACGCATT TGACCTTAATTGAATTAAAAAAAATTTCTCAGGTACTCAGTTTGATGTTCTGGAACTGATTCCCTTTACAAATTCAGAGC TCTTCTAATGTATTAAGCCTAAAAAATAAATTTAAGGTCTAGATGATCCAAATAAGTGTGAGATTAACCCATTAGGGATA CTCTTAATACACATAATAAGAGACACATGGTTCAGTTTAGGAGTTCCAAAATCAAAACCTCTTCCACCCTCACGCTCTCG TTCCTGCTTCTTCTTCTTATTCCAGGGTTCAAACTTAAAATAGATTTTGAGCTCTCTCTACTGCTGCTGAAAGATGAACA TGCAGCGATGTGACGAAGGAGGAGCACGGCGGAGAGCCCTTCACTCTCTTCCGTTCTTCTCCCGGACGAGTTGATTGAAG CGATTCTGCTGAGACTACCGGTGAGTTCTCTTCTCCGATTCAAATCAGTGTGCAAATCGTGGCTCTCTGTAATTTCCGAT CCCCAATTTGCGAAATCCCAATTTGACCTAGCTGCTTCACCCACCCACCGTCTCCTCCTCAATTGCACTCGTAACCTCCA ACTCCAATCCTTAGACATTGATTCAACTACCTCCGTGAACAGCAGGTTGGTTATGGTATATTTACAGATTTTCGGTCCAA CTCTTATCTTGAAGTCCTGGGTTCTTGTAGAGGGTTTCTACTTTTAGCCACTCGCCTAGGTAGTAGTTTCACTGTGTGTA ATCCATCAACGGGTGAGCATAGACGAATTCCATCAACTAGTAGTTTTAGTTATTCTGCTTCTTCTCTGAATGGTATTGGG TATGATGAATCAACCGATGACTACTTGTTAGTTTCCATAAAATCGTATGGCTGTAATCGTACAATTAAGTTGTTTTCTTT GAAAACCAATTTACCCCGCTCGCTCACACTGGATCTTGAATATCGCTATCTCGATTGTAGTCGTCGAAGCGATTTGTTCT TACATGGGTCTCTTCATTGGTTGGTTACGTCTGGTGCTACAAAGCTTCCTGTAGTTCTTGCTTTTAATTTGGTAGGGAGG TGTTTATCGGAGATTGCTCTGTCACCTGATTTAGCTCTGGAATTGAAGAATGAACCATGTGATTTAAGAGAGATGGCAGG ATGTCTTGGTTTGTGTCCTGGTCTGTGTTACACTGCTTATAGTGGCATGATTGAAATATGGATAATAAAAGAGTATAAAG TGCAATCATCTTGGACTAAGATTGTTTTCTCTACTCATGACATCCATACCACACCCCGCTTTTTTCCAATATGTTTCACT AAATGTGGTGACATTTTTGGATCAGATGAGAATGGAAGATTATTGAGATTCAACGATAAAGGAAAGCTGCTTGCAGTTTG GCCGTGGGAGAGCAAATATCGTCTATTATATAGTCGTATGTATACAGCAAGTTTACTGTCACTCCCTAGTTAATTTGCCG GATGCATGCTTACATGAAAATGATTCAGGATTACTGAATTCACTGTTGGATAGGGAAAATATTTTGTCTTGCTTGCTCAG AATAATGAAAGGCAATTTCGGGGGAAAACTATGTAAGAGAAACAACTACGATCCAGAGTGAAATAACAGTTCTCAAACTA AACTCTAATACAGTATATAGTTTGGTGATATTTACAATAAGCTCATTTTTCTGGCAGGCTTGAAGCATGCAAGAGTACTC TGAATAGTCAGGTCAATGTCCTAGCTTTCCTTCAAATGATGATACTACAAGAAGAAAACATAGTATTTCAAAGAGAATGT AAATTATATCTTGTGAAATAATCTTGCATGACCGGTGTCTCTTTTAGTGGTGATTTTAGTCATGTAGGATTTAATTATGT TCCGTAGTATGAAAGTTAACAAATCCTAGTTGGAATTAGTACTTGATATTTATTGCTCTTGGCCAATTTCTTATAAAAAC TTTTGGTTGTACTGGTCCTTAATTAATTGGTATAAATCTGTTTACAAATCACCAAGTGATGTATTGATATTGCTAGTTTA AGGGAAGGTGGTTTTTCAAGTGAATTTAATGTTTGTTGTTGCTGAAATACACAGAATGTCATTTTGTTTTTTGCAGTCCC TGATTCTCCTGAGGCTCTCTTGGTAATAGCCACCCCAATGAAATTTCCTCATTCAGCATATCCAGCAGGCGATGATAATC TGGACCTAATGTCTGCTCTCTTTGTCCTAATCCAGCAGGCGATGATAATCTGAACTTGTTGTGATGTTTGACCTAAGTTC TGCTCTTTTTGTCTTAGATAATGACATTTTAGATGTTAAATATTAAAACTTTTCAATTGTATGTAAGGGATTTGATGTGC GTTTGAAGGAGAAATCAGTGATGGTTGTTAGCATGTACCTCTATATTCAATTTTACTTTTAGACAATGCTAATTGGTCCC AAAATTCTATCGTTTTCATTTGAATTTCTTTTTTCCGTATGAGTTCCCTGATGTAGGAAGGCCTTTGTAATCCTCCACTT CTGGTTTGTGCTTTTGCCTTTTCAAGTTGCCACTTGAATTGAAAAGGTTTGAAAAATAAGTTTCTATTGTCACAAGCCTT CAAATTAAACCAAATGATATGTTGAAGGTGCTGGGCGTTTAACATCTTATTCTACCTCTTACCGTGGTAGAAGGTCTCTA TGCTGATCTAATTTGTGTTTAAATCCATCTTTTATTGGCAATAAGTCCGAAATATGTCTCATATTTGTGTACAAGAATCT ATTTCTAACCTGTAACAGGTGCCTGCTACAGCAAAAAGATGAGGGCTAAGCTCTCCAAATGCTGCTCCTTTGTATTGCTG CATTATATGGATGTCATACAGGTGTGGTAGTCTTCTAAAAGGATTCACTGTAATTAAGATATTCCCTGTATATGTCTGCT CATGTAATGATGGATGATTGTCCGATGTTGATCCTTTCCTTAATATTATTAGACTAAAAATATATATTGAGAAGTTGTCT AGCTGGTTGTGACTCACATATATCTCATTGAGAGAAAAACGGCAGGCAAGGTTATACAGAACTCCTGGCTCATGGAGGTA TGCTAGCTTGGTCATGTCATCAACCCCTGAAGGCTGTGCCTCCATATCTTTAGGGTATATACTTGAAATTTCTGCAACCA CCTGAAATTGGGGATAGTGCTTATTTTATATGCTTCTTCATGCTTGTACTTCAAGCATCAAATTTATGGTCTCATCTTCA CCTCAAATTTAGTTTAAATCCATCTTTTATTGAGCTTAGCCCTCATCTTTTATCACATTATCTTTAGGCTTAAATATGTT TTTGGTCCCTCTAAATTCAAGCAATTTTGGTTAAGGCCCCTCTTAATTTTTTTCTAATATTCCCTTATTTTGAAAATCAT AGTGAGCTCTAAGCCCCTGCTGTCATGTTCCATCCAAATAATGCTGATTCTGTTATTGGACGCTGATGTGGGTGCTTGAC GTGCTAGAAGAGGCATCAAGTGAGGGAGCCAGGTCGGAAATACAAAGATTAAAATAAAATAAAAACTCTAATCCTCAAAT TGATTTAACTCTAAAAAATCGCAATCCCCAATTTGTTGTGTTGTCCCTAAGCACCAATAATTCTCAGCGCTAGTAAGATT GAGTGTGTTTGGCTTAGGAGAGAAAAGAGAGAAGAAAGAAGATGATAGTAAGATAAGAGGTAAGAGATAAAGTGAGCTTT TTATGGTGTTTGGTATAGTCGAAAGAGAAAAGAAAGAAAACAGAAAGAATGATGTGCACAGTTGTCTACTCTAGTTTTGT AGAATAGTAAAAGAGAAGAGAGAAAATTCCCTCAAGTAATATAACATTTTTTTTTC
CDS sequence (LotjaGi1g1v0470300.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCTACTCCAAAATAAGTTATCCAACTTGATTATTCCAGGGTTCAAAGGAAGGAGCACGGAGGAGCGCCCTTCGCTCTC TTCGATTCTTCTCCCTGACGAATTGATTGAAGCGATTCTGCTGCGACTACCGGTGAGTTGTCTTCTCCGTTTCAAATCCG TCTCAAAATCATGGTTGTCTCTAATTTCCAATCCCCAATTTGCCAAATCCCACTTTGACCTAGCTGCTGCACCCACGCAC CGTCTCCTCCTGAATTGCACTCGTGAACTCCGATTCCAGTCCTTAGACGTTGATTCATCGCCACCCAACAATGAAACTGC AGTGCTCAAATACCTCCGTGAAGAGTTTGATGGTTATGGTAGAGATATAGATTTACATTACAACCCCAAACTTGTAGTCC TGGGTTCTTGCAGAGGGTTTCTATTTTTACTTTCAAACAATTTTCCAGCTCATGATTTCGTTGTGTGTAATCCGTTAACG GGTGAGCATAGACGAATTCCATCATCTACTAGTTTTAGTTACTCTTATTCTTCACTGTATGGTATTGGGTATGATCAATC AACTGATGACTACTTGCTAGTTTCTATAAGATCGAATGTTCGTGATCCTAGAATTGAGGTTTTTTCGTTGAAAACCAATT TACCCAGCTCGCTCACACTGGATAATGAATATCAGTCTCTCGGTTCTGATTTTCAACACGGTTTGTTCTTAAATGGGTCT CTCATTGGTTGGTTACCGTTACGTCTAGTGATACCAATCCTCATGTACTTCTTGCTTTTGATTTGGTTAACAAGAGTTCA TCGGAGATTGCTCTGTCACCTGATTTAG
Protein sequence (LotjaGi1g1v0470300.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MLLQNKLSNLIIPGFKGRSTEERPSLSSILLPDELIEAILLRLPVSCLLRFKSVSKSWLSLISNPQFAKSHFDLAAAPTH RLLLNCTRELRFQSLDVDSSPPNNETAVLKYLREEFDGYGRDIDLHYNPKLVVLGSCRGFLFLLSNNFPAHDFVVCNPLT GEHRRIPSSTSFSYSYSSLYGIGYDQSTDDYLLVSIRSNVRDPRIEVFSLKTNLPSSLTLDNEYQSLGSDFQHGLFLNGS LIGWLPLRLVIPILMYFLLLIWLTRVHRRLLCHLI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
Phobius | 1 | 240 | 240 | - | – | |
Gene3D | 20 | 115 | 96 | 5.0E-7 | – | |
ProSiteProfiles | 25 | 71 | 47 | 9.656 | ||
PANTHER | 30 | 249 | 220 | 1.2E-41 | – | |
PANTHER | 30 | 249 | 220 | 1.2E-41 | – | |
SUPERFAMILY | 30 | 84 | 55 | 3.66E-13 | ||
Pfam | 31 | 67 | 37 | 5.7E-8 | ||
SMART | 31 | 71 | 41 | 5.1E-6 | ||
TIGRFAM | 136 | 241 | 106 | 2.6E-12 | ||
Phobius | 241 | 263 | 23 | - | – | |
TMHMM | 241 | 263 | 23 | - | – | |
Phobius | 264 | 275 | 12 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi1g1v0470300.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…