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LotjaGi1g1v0473300.4

Overview

Field Value
Gene ID LotjaGi1g1v0473300
Transcript ID LotjaGi1g1v0473300.4
Related isoforms 4
Lotus japonicus genome version Gifu v1.2
Description ATP-dependent RNA helicase; TAIR: AT4G00660.1 RNAhelicase-like 8; Swiss-Prot: sp|Q8RXK6|RH8_ARATH DEAD-box ATP-dependent RNA helicase 8; TrEMBL-Plants: tr|A0A151TBJ5|A0A151TBJ5_CAJCA DEAD-box ATP-dependent RNA helicase 8; Found in the gene: LotjaGi1g1v0473300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:98370544..98377130) extracted from Lotus japonicus Gifu genome v1.2.

AACAACAACAATAGAGCGAGATGCCCACCTCCTGGGATCGGGTTAGGTCGAGGTAACGGTGGCGGCGGCGGTGGTGGTTT TAACTCGAACCCTGGGTTTCAACCAAGGCCACATCAACAACAACAACAACAACATCAGTATGTGCAGAGGCACATGATGC CGAATCAACAGCAGTACCACCAGCAGCAGCATCAACAAAATCAGCCGCAGTACCACCAGCAGCATCAACACAATCAACAG CAGCAGCAGCAACAGCAACAACAGTGGTTGAGAAGGACCCAGTTGGGTGGTAATGACACCAACGTTGTTGAGGAAGTTGA GAAGACTGTACAGTCTGAATCTGCCGACCCTAGGTGATTTTTGGTCTTTTGCTTTTGTGTTTCTTCTTATTTTGCGATTT ACTTAGATTAGTTACTTGAAATTATGTTGTGTGTATTAGACAGACTCATAGTGATGGGTTTAGTACATGCAAGTTTGTGG TGTTGGATTTTTTGTTAGAATTTGGCATGAAACTTTTTCAGTGAGTGGTTGACTGCCTTAAAGTTTAAGAGGATATGTAT AATGTAACAATAGGAGTTAAGCCTATACTATACGGGCGATGTGTAGTTGATGTGGTATATCTGTTATCTCAATGGCTTGG GACTTTGGCTTGCTTTTCCTTTACTTTATTGATGAAAGCAATCTGTCTGCTTCCAATGCGGCTTGTTTTATTTGCTGGTC TAAACTAGAGTGTGGAGACTCTTGGGTGTTTTATTCATTTTTATCTATTGAAGATGGAGTTCCTCGTTGGGATTCAACAA TTTTGAAAGATGTTGAAAGTTACACTGGTTCATAAATGGTTGTTGAAACTCAGTTTGAGCAGCAAACCTAATGCCTGACT GCTGTTTTATGAGGCTCTATGTAAGACTACTTTTTTTTTTTAAACATTTTATCTAACGTAAACAAAATTACATTGATTTC TGTATTATGTTTATGCTCAAATGCATAACTGAGTTGATAATATCTAAAATCTATAATTTGTGCCTTGTTGTTGCAAATTT AGTGTGCTGTGTATTGATGCTTGCTTAACTATGAGTGTGTGAAAGGTTTGGAAATGACAACATGTAAAATTCAATTATCT TACTGCTAGATAAAGCTATTATACTGGTTCTTGCCTAAGAAAATAGTACATTCTAACATTTTTCTCAATTGATTTCCTTT GTTAGTTCACAAGATTGGAAGGCAAGACTAAAGATTCCCCCTCCAGATACACGCTACCAGACAGAGGTATGGTTCTAAGC AGTTAAAAAGTAAAAAACTATTATTTTATGATCCAAGTGATTTCATGATAGGGATGGCAAATAGATGCAGACCCAATGGG TACACATATAAATTATTCATAATGTATAACATTTTTTAGCCATCAAATGGGTTCAAAAAAATTAGCGGGTATAGTACCTA ATCCTACCCATACCATAATATAATTTTTTTTAGTTATAAATTTATAATTCAAAAGATTCTTCATTAAACTTAAGTTAAAT GGTTGTGTAATATTTTATAATTAGGAATTAAATGATTTTTGAATATCTTTTCAACTGAGTTACATTGTGTAATTTTAACC AATGCTATCTTTTGGGTTGAATTTTTGCCGTCAAGGTTAGTATTATAATAATGTTTGTTTTATTAGTTTATCAGACAAAC GTATTATAAAAGATCATATTCTCCATTTTGTTATGTTTCTAATTTACTATTTAATTTTTGTTCATCTTTACCAGTATAGA GTTGTTACTTTATTTAATATAACAGAATTGTTTGTTGAAGTTTATTCTTGACATCAGTTATTGCTGGCATTTTGTTGAAT CATGTCATTTTAGTACCCTTTGCTCTATTAGACATTTGTTATTGCCATTTGTTTCAGTAATTAGACAATTAGACTTTGTA CAACTACAAAACATTTCAACCTTCAACTATATTTTGCTGCAAATTAGAGATCTAGGACGTATACTCAAATTCTACCCCTT GTAAGTTTAGTGGCCTTTAGTTTTCTGACCTTGGTGGTTTGTAATAATTATCCTAAATTAAGTGCTAGATGTCCAAGTGT GAATATATTTCTGCATGATATTCCCACTATCCATTTAAAGGCCTGATAGTTATCATCTAGGGGGTGTTCATTCAAAAGGC GTTATTAGTTTTTCTATAATATTTATGATGGTCTTGACTTTTGGCCTTTATCTATTTTCTTACTCAGGATGTAACAGCAA CTAAAGGAAATGAATTTGAGGATTACTTTTTGAAGCGTGAGCTGCTCATGGGAATTTATGAGAAGGGTTTTGAAAAGCCA TCTCCTATTCAAGAAGAAAGCATTCCTATTGCTCTTACTGGTAGTGACATTCTTGCTAGGGCAAAAAATGGAACAGGCAA AACTGCTGCGTTTTGTATTCCCGCATTGGAAAAAATTGATCACGATAACAATGTTATTCAAGGTTTGACTTCGTTCACTA ACATTTAGCTTTTTGTCCAGAAAGATACTCTAGCTCTGATAGTAATTTGTTCCTGAAAGTTATCCTTCTTTTCCCTATTA AATATTATTATTTAAAACTTGAAATTCCTTTTAAACAAACTGACTTCTTGTGGGTAAATTGTTACTGTTTTAGCCTGGAA TTTCATTGCTGTTAAGAATATAAACATGTGATGGGTGCATAAATCATCATGTGAGGGTACTCTAATTTGTTTTTTTTTTT GGGTATCCTATAATTGGTCTCTGTACATATCATACGTAGATATTGCCTGCCACGATTCTGTCTGACCTACAAAGGCTTCT TCTATTTTTCTTCATAAACAAAAACAAATGTGCATATAGATTTTGTCACCAATTGCCAAAGTTAATTAAAAATAGCAAAA GCTAGTTGTCTGTTGATGCATGATTCTATTTTTCATTATCTATAAATATTTCTTGTCTCGTGTTTTTAAATGAGAATTGG TTTGAGGCTTTACTCATCTTTTGTTCATTGCCTTTGTATTTGTTCTGTCATGCAGTTGTTATACTGGTCCCAACAAGAGA ATTGGCTTTGCAAACATCACAAGTGTGTAAAGAGCTTGGAAAGCATTTGAAAATTCAAGTTATGGTTACAACAGGTGGTA CCAGCCTGAAAGATGATATCATGCGTTTATATCAACCAGTTCATTTGCTAGTTGGAACTCCAGGAAGAATACTAGATCTT GCAAAGAAAGGTGTTTGCATTCTGAAAGATTGCTCTATGCTTGTTATGGATGAGGTAATTGCAATTCACCTAAAGTTTTC AAATTTATATAGCATCTGCCATCTGGTTGAGAAGCATTAACTGTTTGATAACGTTGTTATTTAAAATAGGATTAAGATGA GGCTTAGAAATTTTGGTATTGCCTGATATCTAGAATTCTAGATTTGTTTCTATGGTTTCTGTCTACTGTCTACTCTACTT GGATAAGGATATTGTATCCTTGTGTTGTCAAGTTTAGTGGAAGACTGGAAGCAACAACTTTGTTTGTTGTATCTCCGATT TTTGTTTTAAATAGTGAGCAGAATATCTTTTTCTTTATGTCTTTTAACATTAGTAGCAACTTCAACAGTGACAGTTATAT ATCAATCTGAATCTTTGCATAACTTTCTCTCAGGCTGATAAGCTTCTCTCCCCTGAGTTCCAACCTTCAATAGAGCAGCT GATTCAATTTCTTTCTCCTAACCGTCAAATCCTGATGTATTCAGCTACATATCCTGTTACTGTAAAGGACTTCAAGGAAA GATATCTTCGTAAGCCGTATGTCATTAACCTTATGGATGAGCTAACTCTGAAGGGTATTACACAATTCTATGCATTTGTG GAAGAGAGGCAGAAAGTCCACTGCCTAAATACTCTCTTCTCTAAGGTATAAATTTTTTATGTTAAGATATTCTGGATTCT TTTTATTTGAGAGTTTTGAATACAATAATAATAATGGCTGCTATTCCAGCTTCAAATAAACCAATCAATCATCTTCTGCA ATTCGGTGAATCGGGTTGAACTCCTTGCCAAGAAAATCACAGAACTTGGATATTCATGTTTCTATATTCATGCAAAAATG TTACAAGACCACCGTAATAGAGTTTTTCATGACTTCCGCAACGGTGCCTGCAGGAATCTTGTTTGCACTGGTACGTTGTT GGATCTTTAGCATCTTACTATGAATGAGTATAATGAGTGTTTCTTTGTGTTGATTGTGAGCAATGCCTATCTTCCTATCT GTGGCTTACTTAAATATATAACTTTCTGATCACGTTGTCCTTTATTTTCTGATATCATCACCTTTTCTTTTAGAAATCAG TCTTAAAAGTGAATATTAGTATATTTGTATTGCTCGAGTGCTCTGGGGAAAAGAACTTAATTAAGCGATAAACACTTATC ACATAAGGGCTTACACCTAAGCTTATGTTAGAAACTTTTTGAAATAAGCACAAAATATCTTATAGGCTGGTATAAATATT TATTCTCAAGTTAATCTTAACAGCTTATGGAAATAAGCTTTTGGCTTAAAAGCACATTTGGTCCCCCACAAATGCGAATT GTGCAAAATGAGTCCCTAAACTATTTATTTAGCATTCTCAGTCCCCCACGTTTTCTCCTGTTACCACAGTTAGTCCTTCT GTTAGATTTTGGACGGTTTTTTCTTATGTGGATTTTTTTAAATGACTTGGAGGAGAGAGAAGAAGGTTAGTAGGAGAGAG GGCACGCATGTGCCTTGCACGTGCCCCTTTTCTTCATCTTCTTCATCCCAAACCCAGAATAAACCTAAAACCTTACATTC ATCAATGCATCTAAAACTCCTAACATTTAATCTGCAACCAACAACAAAAAATGCCCAGCCCCATCTTTCTTTCTATGAAA CCAATATGAAAATAACCACCAATCCTTGCAGATTCAGATTTCGACCTTTCCCCTTTCTTCCAGATCCAAATTCAACATTT TCCCTTCCTCCCAAATCCGTTTTGAAGATCAATCGGGCTTTTCTTTCTGATATTTTTTTTTCATTTTTGGAGAGGCCCCC ATCCACCGCTCCATGTGAACTACTTCACGCATTGTACAACAGAGAGAACCCCACTCCAATTTTTTCTTCTCCTTCTTCCC CAATTTTTTGTGAATCTTTCTCTTCCACTCCTTATTGAATTGGGGTTTGTTTGATGGTGTTTCTAGGTCCAAGGGAGAGG GTTCAAAGGTACCCAAAACTTTGCAATCTGGATTGGTGTTTGTTCAATGGTGTTTCTGGGTCTTAGGAAGAGGGTTCAAA GGTACCCAGAACGAGATCGAAGGAGAAGAGGGGTCGAAGTTACCTAGAACGTCGCGATTTGGATTGGGGTTTGTTAGATG TTGTTTCTGGGTCAAAGGAAGACCAAGAGAGATTGAAGTACCCAGAACGAGATTGAAGGAAGATGGTTCAAGGAACCCAT AAATTTGTGTTCAAAAAAAAAAACTATCTTGTTAGAAATTTTCGTTCACGGTAGAATTTCCAGCCTTGGGCTATATATTT TTGTATTTATTGACTTGCTCTTATAGAATATAGATGATGATGTTTTGGAGACAAATATGATGAACGTGATGGTGAATCTT CATTCATATGTCTATGAGTTTTTTATTATGAATTTGTGATGGAAATTGGGATGTAGATAATGAACGTGATGATGGAAATT GATATTTGGGTTTTTCTGGGTTTATGATGAAGAAGATGAACATTCATCATGTTTTTGATTTTTTTTCTTTTATTTTTTAA TCAATTTTTTAACAGATTCTGTTAGTTTATAGACGGAAAACTAAAATTGCAAACAGAGGGTAATGTCGGGGACTAAGAAT GCTATTTTTAAAGTTTAGGGACTTATTTTGCACGATTCACATTCGTGGGGGACCAAATGTGCTTTTAAGCCTAAGCTTTT TTTAGTGTATAGGTAAGTCAAAGCTATTTTCTTAAGCTTACCCAAGTGCCTGCATTAGTGCTAATGCTATAAGATAAGCT CAAATAAGCTCTTCTAAACGTAGTTTAATTCATTGATGCGTTGATGATACTGGGTGATAATGTTTATGAATATTTGTTGC CCATATTTCCTTAATTGAACTTGTTAGATTTTGTTTTCTCTTGATATTTTTTCCTATTAATAATGACTTCTAATTTTTCT CTCTTGTTTTGAAACTCAGATCTTTTCACTAGGGGAATAGATATCCAAGCAGTCAATGTTGTTATTAATTTTGATTTTCC CAAGAACGCAGAAACTTATCTGCACAGGGTACGCTTGATTTCTGCTTTCTTTCTCCTCTACCCTGACAATGATTCTCTGT ATGAGTTCTTATCTATGTTCTGTTGTACAGGTTGGTCGTTCAGGGAGATATGGGCACCTTGGTTTAGCAGTGAACTTGAT CACCTATGAGGATCGCTTCAATTTGTAAGTATATCTGGTTGATCTGAATTCCAAAGATATCTTCTGACTTTCTGTAGATC TCTGATGTATTTTCATATATTTGTCCAGATATAGGATTGAACAAGAGCTCGGCACTGAAATAAAACAAATTCCGCCACAC ATTGACCAGGCAATATATTGTAGATAG
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0473300.4) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGATGCCGAATCAACAGCAGTACCACCAGCAGCAGCAGCAGCAGCAACAGCAACAACAGTGGTTGAGAAGGACCCAGTT GGGTGGTAATGACACCAACGTTGTTGAGGAAGTTGAGAAGACTGTACAGTCTGAATCTGCCGACCCTAGTTCACAAGATT GGAAGGCAAGACTAAAGATTCCCCCTCCAGATACACGCTACCAGACAGAGGATGTAACAGCAACTAAAGGAAATGAATTT GAGGATTACTTTTTGAAGCGTGAGCTGCTCATGGGAATTTATGAGAAGGGTTTTGAAAAGCCATCTCCTATTCAAGAAGA AAGCATTCCTATTGCTCTTACTGGTAGTGACATTCTTGCTAGGGCAAAAAATGGAACAGGCAAAACTGCTGCGTTTTGTA TTCCCGCATTGGAAAAAATTGATCACGATAACAATGTTATTCAAGTTGTTATACTGGTCCCAACAAGAGAATTGGCTTTG CAAACATCACAAGTGTGTAAAGAGCTTGGAAAGCATTTGAAAATTCAAGTTATGGTTACAACAGGTGGTACCAGCCTGAA AGATGATATCATGCGTTTATATCAACCAGTTCATTTGCTAGTTGGAACTCCAGGAAGAATACTAGATCTTGCAAAGAAAG GTGTTTGCATTCTGAAAGATTGCTCTATGCTTGTTATGGATGAGGCTGATAAGCTTCTCTCCCCTGAGTTCCAACCTTCA ATAGAGCAGCTGATTCAATTTCTTTCTCCTAACCGTCAAATCCTGATGTATTCAGCTACATATCCTGTTACTGTAAAGGA CTTCAAGGAAAGATATCTTCGTAAGCCGTATGTCATTAACCTTATGGATGAGCTAACTCTGAAGGGTATTACACAATTCT ATGCATTTGTGGAAGAGAGGCAGAAAGTCCACTGCCTAAATACTCTCTTCTCTAAGCTTCAAATAAACCAATCAATCATC TTCTGCAATTCGGTGAATCGGGTTGAACTCCTTGCCAAGAAAATCACAGAACTTGGATATTCATGTTTCTATATTCATGC AAAAATGTTACAAGACCACCGTAATAGAGTTTTTCATGACTTCCGCAACGGTGCCTGCAGGAATCTTGTTTGCACTGATC TTTTCACTAGGGGAATAGATATCCAAGCAGTCAATGTTGTTATTAATTTTGATTTTCCCAAGAACGCAGAAACTTATCTG CACAGGGTTGGTCGTTCAGGGAGATATGGGCACCTTGGTTTAGCAGTGAACTTGATCACCTATGAGGATCGCTTCAATTT ATATAGGATTGAACAAGAGCTCGGCACTGAAATAAAACAAATTCCGCCACACATTGACCAGGCAATATATTGTAGATAG
Download CDS Sequence

Protein sequence (LotjaGi1g1v0473300.4) extracted from Lotus japonicus Gifu v1.2 Proteins.

MMPNQQQYHQQQQQQQQQQQWLRRTQLGGNDTNVVEEVEKTVQSESADPSSQDWKARLKIPPPDTRYQTEDVTATKGNEF EDYFLKRELLMGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDHDNNVIQVVILVPTRELAL QTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCILKDCSMLVMDEADKLLSPEFQPS IEQLIQFLSPNRQILMYSATYPVTVKDFKERYLRKPYVINLMDELTLKGITQFYAFVEERQKVHCLNTLFSKLQINQSII FCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYL HRVGRSGRYGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIYCR
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 51 51 - –
MobiDBLite
mobidb-lite
1 68 68 - –
Gene3D
G3DSA:3.40.50.300
34 282 249 1.5E-66 –
PANTHER
PTHR24031
34 437 404 1.9E-257 –
PANTHER
PTHR24031:SF661
34 437 404 1.9E-257 –
ProSiteProfiles
PS51195
78 106 29 10.185
IPR014014
CDD
cd17940
80 280 201 1.22018E-142 –
SMART
SM00487
97 293 197 3.9E-56
IPR014001
Pfam
PF00270
103 267 165 4.0E-43
IPR011545
ProSiteProfiles
PS51192
109 279 171 28.661
IPR014001
SUPERFAMILY
SSF52540
148 432 285 1.8E-70
IPR027417
ProSitePatterns
PS00039
225 233 9 -
IPR000629
Gene3D
G3DSA:3.40.50.300
283 452 170 2.1E-54 –
ProSiteProfiles
PS51194
289 449 161 24.013
IPR001650
CDD
cd18787
290 419 130 4.1978E-57 –
Pfam
PF00271
304 410 107 6.6E-28
IPR001650
SMART
SM00490
329 410 82 1.5E-30
IPR001650

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0473300.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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