Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi1g1v0473300.5

Overview

Field Value
Gene ID LotjaGi1g1v0473300
Transcript ID LotjaGi1g1v0473300.5
Related isoforms 4
Lotus japonicus genome version Gifu v1.2
Description ATP-dependent RNA helicase; TAIR: AT4G00660.1 RNAhelicase-like 8; Swiss-Prot: sp|Q8RXK6|RH8_ARATH DEAD-box ATP-dependent RNA helicase 8; TrEMBL-Plants: tr|V7B5X6|V7B5X6_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0473300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:98370544..98377133) extracted from Lotus japonicus Gifu genome v1.2.

ATGAACAACAACAATAGAGCGAGATGCCCACCTCCTGGGATCGGGTTAGGTCGAGGTAACGGTGGCGGCGGCGGTGGTGG TTTTAACTCGAACCCTGGGTTTCAACCAAGGCCACATCAACAACAACAACAACAACATCAGTATGTGCAGAGGCACATGA TGCCGAATCAACAGCAGTACCACCAGCAGCAGCATCAACAAAATCAGCCGCAGTACCACCAGCAGCATCAACACAATCAA CAGCAGCAGCAGCAACAGCAACAACAGTGGTTGAGAAGGACCCAGTTGGGTGGTAATGACACCAACGTTGTTGAGGAAGT TGAGAAGACTGTACAGTCTGAATCTGCCGACCCTAGGTGATTTTTGGTCTTTTGCTTTTGTGTTTCTTCTTATTTTGCGA TTTACTTAGATTAGTTACTTGAAATTATGTTGTGTGTATTAGACAGACTCATAGTGATGGGTTTAGTACATGCAAGTTTG TGGTGTTGGATTTTTTGTTAGAATTTGGCATGAAACTTTTTCAGTGAGTGGTTGACTGCCTTAAAGTTTAAGAGGATATG TATAATGTAACAATAGGAGTTAAGCCTATACTATACGGGCGATGTGTAGTTGATGTGGTATATCTGTTATCTCAATGGCT TGGGACTTTGGCTTGCTTTTCCTTTACTTTATTGATGAAAGCAATCTGTCTGCTTCCAATGCGGCTTGTTTTATTTGCTG GTCTAAACTAGAGTGTGGAGACTCTTGGGTGTTTTATTCATTTTTATCTATTGAAGATGGAGTTCCTCGTTGGGATTCAA CAATTTTGAAAGATGTTGAAAGTTACACTGGTTCATAAATGGTTGTTGAAACTCAGTTTGAGCAGCAAACCTAATGCCTG ACTGCTGTTTTATGAGGCTCTATGTAAGACTACTTTTTTTTTTTAAACATTTTATCTAACGTAAACAAAATTACATTGAT TTCTGTATTATGTTTATGCTCAAATGCATAACTGAGTTGATAATATCTAAAATCTATAATTTGTGCCTTGTTGTTGCAAA TTTAGTGTGCTGTGTATTGATGCTTGCTTAACTATGAGTGTGTGAAAGGTTTGGAAATGACAACATGTAAAATTCAATTA TCTTACTGCTAGATAAAGCTATTATACTGGTTCTTGCCTAAGAAAATAGTACATTCTAACATTTTTCTCAATTGATTTCC TTTGTTAGTTCACAAGATTGGAAGGCAAGACTAAAGATTCCCCCTCCAGATACACGCTACCAGACAGAGGTATGGTTCTA AGCAGTTAAAAAGTAAAAAACTATTATTTTATGATCCAAGTGATTTCATGATAGGGATGGCAAATAGATGCAGACCCAAT GGGTACACATATAAATTATTCATAATGTATAACATTTTTTAGCCATCAAATGGGTTCAAAAAAATTAGCGGGTATAGTAC CTAATCCTACCCATACCATAATATAATTTTTTTTAGTTATAAATTTATAATTCAAAAGATTCTTCATTAAACTTAAGTTA AATGGTTGTGTAATATTTTATAATTAGGAATTAAATGATTTTTGAATATCTTTTCAACTGAGTTACATTGTGTAATTTTA ACCAATGCTATCTTTTGGGTTGAATTTTTGCCGTCAAGGTTAGTATTATAATAATGTTTGTTTTATTAGTTTATCAGACA AACGTATTATAAAAGATCATATTCTCCATTTTGTTATGTTTCTAATTTACTATTTAATTTTTGTTCATCTTTACCAGTAT AGAGTTGTTACTTTATTTAATATAACAGAATTGTTTGTTGAAGTTTATTCTTGACATCAGTTATTGCTGGCATTTTGTTG AATCATGTCATTTTAGTACCCTTTGCTCTATTAGACATTTGTTATTGCCATTTGTTTCAGTAATTAGACAATTAGACTTT GTACAACTACAAAACATTTCAACCTTCAACTATATTTTGCTGCAAATTAGAGATCTAGGACGTATACTCAAATTCTACCC CTTGTAAGTTTAGTGGCCTTTAGTTTTCTGACCTTGGTGGTTTGTAATAATTATCCTAAATTAAGTGCTAGATGTCCAAG TGTGAATATATTTCTGCATGATATTCCCACTATCCATTTAAAGGCCTGATAGTTATCATCTAGGGGGTGTTCATTCAAAA GGCGTTATTAGTTTTTCTATAATATTTATGATGGTCTTGACTTTTGGCCTTTATCTATTTTCTTACTCAGGATGTAACAG CAACTAAAGGAAATGAATTTGAGGATTACTTTTTGAAGCGTGAGCTGCTCATGGGAATTTATGAGAAGGGTTTTGAAAAG CCATCTCCTATTCAAGAAGAAAGCATTCCTATTGCTCTTACTGGTAGTGACATTCTTGCTAGGGCAAAAAATGGAACAGG CAAAACTGCTGCGTTTTGTATTCCCGCATTGGAAAAAATTGATCACGATAACAATGTTATTCAAGGTTTGACTTCGTTCA CTAACATTTAGCTTTTTGTCCAGAAAGATACTCTAGCTCTGATAGTAATTTGTTCCTGAAAGTTATCCTTCTTTTCCCTA TTAAATATTATTATTTAAAACTTGAAATTCCTTTTAAACAAACTGACTTCTTGTGGGTAAATTGTTACTGTTTTAGCCTG GAATTTCATTGCTGTTAAGAATATAAACATGTGATGGGTGCATAAATCATCATGTGAGGGTACTCTAATTTGTTTTTTTT TTTGGGTATCCTATAATTGGTCTCTGTACATATCATACGTAGATATTGCCTGCCACGATTCTGTCTGACCTACAAAGGCT TCTTCTATTTTTCTTCATAAACAAAAACAAATGTGCATATAGATTTTGTCACCAATTGCCAAAGTTAATTAAAAATAGCA AAAGCTAGTTGTCTGTTGATGCATGATTCTATTTTTCATTATCTATAAATATTTCTTGTCTCGTGTTTTTAAATGAGAAT TGGTTTGAGGCTTTACTCATCTTTTGTTCATTGCCTTTGTATTTGTTCTGTCATGCAGTTGTTATACTGGTCCCAACAAG AGAATTGGCTTTGCAAACATCACAAGTGTGTAAAGAGCTTGGAAAGCATTTGAAAATTCAAGTTATGGTTACAACAGGTG GTACCAGCCTGAAAGATGATATCATGCGTTTATATCAACCAGTTCATTTGCTAGTTGGAACTCCAGGAAGAATACTAGAT CTTGCAAAGAAAGGTGTTTGCATTCTGAAAGATTGCTCTATGCTTGTTATGGATGAGGTAATTGCAATTCACCTAAAGTT TTCAAATTTATATAGCATCTGCCATCTGGTTGAGAAGCATTAACTGTTTGATAACGTTGTTATTTAAAATAGGATTAAGA TGAGGCTTAGAAATTTTGGTATTGCCTGATATCTAGAATTCTAGATTTGTTTCTATGGTTTCTGTCTACTGTCTACTCTA CTTGGATAAGGATATTGTATCCTTGTGTTGTCAAGTTTAGTGGAAGACTGGAAGCAACAACTTTGTTTGTTGTATCTCCG ATTTTTGTTTTAAATAGTGAGCAGAATATCTTTTTCTTTATGTCTTTTAACATTAGTAGCAACTTCAACAGTGACAGTTA TATATCAATCTGAATCTTTGCATAACTTTCTCTCAGGCTGATAAGCTTCTCTCCCCTGAGTTCCAACCTTCAATAGAGCA GCTGATTCAATTTCTTTCTCCTAACCGTCAAATCCTGATGTATTCAGCTACATATCCTGTTACTGTAAAGGACTTCAAGG AAAGATATCTTCGTAAGCCGTATGTCATTAACCTTATGGATGAGCTAACTCTGAAGGGTATTACACAATTCTATGCATTT GTGGAAGAGAGGCAGAAAGTCCACTGCCTAAATACTCTCTTCTCTAAGGTATAAATTTTTTATGTTAAGATATTCTGGAT TCTTTTTATTTGAGAGTTTTGAATACAATAATAATAATGGCTGCTATTCCAGCTTCAAATAAACCAATCAATCATCTTCT GCAATTCGGTGAATCGGGTTGAACTCCTTGCCAAGAAAATCACAGAACTTGGATATTCATGTTTCTATATTCATGCAAAA ATGTTACAAGACCACCGTAATAGAGTTTTTCATGACTTCCGCAACGGTGCCTGCAGGAATCTTGTTTGCACTGGTACGTT GTTGGATCTTTAGCATCTTACTATGAATGAGTATAATGAGTGTTTCTTTGTGTTGATTGTGAGCAATGCCTATCTTCCTA TCTGTGGCTTACTTAAATATATAACTTTCTGATCACGTTGTCCTTTATTTTCTGATATCATCACCTTTTCTTTTAGAAAT CAGTCTTAAAAGTGAATATTAGTATATTTGTATTGCTCGAGTGCTCTGGGGAAAAGAACTTAATTAAGCGATAAACACTT ATCACATAAGGGCTTACACCTAAGCTTATGTTAGAAACTTTTTGAAATAAGCACAAAATATCTTATAGGCTGGTATAAAT ATTTATTCTCAAGTTAATCTTAACAGCTTATGGAAATAAGCTTTTGGCTTAAAAGCACATTTGGTCCCCCACAAATGCGA ATTGTGCAAAATGAGTCCCTAAACTATTTATTTAGCATTCTCAGTCCCCCACGTTTTCTCCTGTTACCACAGTTAGTCCT TCTGTTAGATTTTGGACGGTTTTTTCTTATGTGGATTTTTTTAAATGACTTGGAGGAGAGAGAAGAAGGTTAGTAGGAGA GAGGGCACGCATGTGCCTTGCACGTGCCCCTTTTCTTCATCTTCTTCATCCCAAACCCAGAATAAACCTAAAACCTTACA TTCATCAATGCATCTAAAACTCCTAACATTTAATCTGCAACCAACAACAAAAAATGCCCAGCCCCATCTTTCTTTCTATG AAACCAATATGAAAATAACCACCAATCCTTGCAGATTCAGATTTCGACCTTTCCCCTTTCTTCCAGATCCAAATTCAACA TTTTCCCTTCCTCCCAAATCCGTTTTGAAGATCAATCGGGCTTTTCTTTCTGATATTTTTTTTTCATTTTTGGAGAGGCC CCCATCCACCGCTCCATGTGAACTACTTCACGCATTGTACAACAGAGAGAACCCCACTCCAATTTTTTCTTCTCCTTCTT CCCCAATTTTTTGTGAATCTTTCTCTTCCACTCCTTATTGAATTGGGGTTTGTTTGATGGTGTTTCTAGGTCCAAGGGAG AGGGTTCAAAGGTACCCAAAACTTTGCAATCTGGATTGGTGTTTGTTCAATGGTGTTTCTGGGTCTTAGGAAGAGGGTTC AAAGGTACCCAGAACGAGATCGAAGGAGAAGAGGGGTCGAAGTTACCTAGAACGTCGCGATTTGGATTGGGGTTTGTTAG ATGTTGTTTCTGGGTCAAAGGAAGACCAAGAGAGATTGAAGTACCCAGAACGAGATTGAAGGAAGATGGTTCAAGGAACC CATAAATTTGTGTTCAAAAAAAAAAACTATCTTGTTAGAAATTTTCGTTCACGGTAGAATTTCCAGCCTTGGGCTATATA TTTTTGTATTTATTGACTTGCTCTTATAGAATATAGATGATGATGTTTTGGAGACAAATATGATGAACGTGATGGTGAAT CTTCATTCATATGTCTATGAGTTTTTTATTATGAATTTGTGATGGAAATTGGGATGTAGATAATGAACGTGATGATGGAA ATTGATATTTGGGTTTTTCTGGGTTTATGATGAAGAAGATGAACATTCATCATGTTTTTGATTTTTTTTCTTTTATTTTT TAATCAATTTTTTAACAGATTCTGTTAGTTTATAGACGGAAAACTAAAATTGCAAACAGAGGGTAATGTCGGGGACTAAG AATGCTATTTTTAAAGTTTAGGGACTTATTTTGCACGATTCACATTCGTGGGGGACCAAATGTGCTTTTAAGCCTAAGCT TTTTTTAGTGTATAGGTAAGTCAAAGCTATTTTCTTAAGCTTACCCAAGTGCCTGCATTAGTGCTAATGCTATAAGATAA GCTCAAATAAGCTCTTCTAAACGTAGTTTAATTCATTGATGCGTTGATGATACTGGGTGATAATGTTTATGAATATTTGT TGCCCATATTTCCTTAATTGAACTTGTTAGATTTTGTTTTCTCTTGATATTTTTTCCTATTAATAATGACTTCTAATTTT TCTCTCTTGTTTTGAAACTCAGATCTTTTCACTAGGGGAATAGATATCCAAGCAGTCAATGTTGTTATTAATTTTGATTT TCCCAAGAACGCAGAAACTTATCTGCACAGGGTACGCTTGATTTCTGCTTTCTTTCTCCTCTACCCTGACAATGATTCTC TGTATGAGTTCTTATCTATGTTCTGTTGTACAGGTTGGTCGTTCAGGGAGATATGGGCACCTTGGTTTAGCAGTGAACTT GATCACCTATGAGGATCGCTTCAATTTGTAAGTATATCTGGTTGATCTGAATTCCAAAGATATCTTCTGACTTTCTGTAG ATCTCTGATGTATTTTCATATATTTGTCCAGATATAGGATTGAACAAGAGCTCGGCACTGAAATAAAACAAATTCCGCCA CACATTGACCAGGCAATATATTGTAGATAG
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0473300.5) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAACAACAACAATAGAGCGAGATGCCCACCTCCTGGGATCGGGTTAGGTCGAGGTAACGGTGGCGGCGGCGGTGGTGG TTTTAACTCGAACCCTGGGTTTCAACCAAGGCCACATCAACAACAACAACAACAACATCAGTATGTGCAGAGGCACATGA TGCCGAATCAACAGCAGTACCACCAGCAGCAGCATCAACAAAATCAGCCGCAGTACCACCAGCAGCATCAACACAATCAA CAGCAGCAGCAGCAACAGCAACAACAGTGGTTGAGAAGGACCCAGTTGGGTGGTAATGACACCAACGTTGTTGAGGAAGT TGAGAAGACTGTACAGTCTGAATCTGCCGACCCTAGTTCACAAGATTGGAAGGCAAGACTAAAGATTCCCCCTCCAGATA CACGCTACCAGACAGAGGATGTAACAGCAACTAAAGGAAATGAATTTGAGGATTACTTTTTGAAGCGTGAGCTGCTCATG GGAATTTATGAGAAGGGTTTTGAAAAGCCATCTCCTATTCAAGAAGAAAGCATTCCTATTGCTCTTACTGGTAGTGACAT TCTTGCTAGGGCAAAAAATGGAACAGGCAAAACTGCTGCGTTTTGTATTCCCGCATTGGAAAAAATTGATCACGATAACA ATGTTATTCAAGTTGTTATACTGGTCCCAACAAGAGAATTGGCTTTGCAAACATCACAAGTGTGTAAAGAGCTTGGAAAG CATTTGAAAATTCAAGTTATGGTTACAACAGGTGGTACCAGCCTGAAAGATGATATCATGCGTTTATATCAACCAGTTCA TTTGCTAGTTGGAACTCCAGGAAGAATACTAGATCTTGCAAAGAAAGGTGTTTGCATTCTGAAAGATTGCTCTATGCTTG TTATGGATGAGGCTGATAAGCTTCTCTCCCCTGAGTTCCAACCTTCAATAGAGCAGCTGATTCAATTTCTTTCTCCTAAC CGTCAAATCCTGATGTATTCAGCTACATATCCTGTTACTGTAAAGGACTTCAAGGAAAGATATCTTCGTAAGCCGTATGT CATTAACCTTATGGATGAGCTAACTCTGAAGGGTATTACACAATTCTATGCATTTGTGGAAGAGAGGCAGAAAGTCCACT GCCTAAATACTCTCTTCTCTAAGCTTCAAATAAACCAATCAATCATCTTCTGCAATTCGGTGAATCGGGTTGAACTCCTT GCCAAGAAAATCACAGAACTTGGATATTCATGTTTCTATATTCATGCAAAAATGTTACAAGACCACCGTAATAGAGTTTT TCATGACTTCCGCAACGGTGCCTGCAGGAATCTTGTTTGCACTGATCTTTTCACTAGGGGAATAGATATCCAAGCAGTCA ATGTTGTTATTAATTTTGATTTTCCCAAGAACGCAGAAACTTATCTGCACAGGGTTGGTCGTTCAGGGAGATATGGGCAC CTTGGTTTAGCAGTGAACTTGATCACCTATGAGGATCGCTTCAATTTATATAGGATTGAACAAGAGCTCGGCACTGAAAT AAAACAAATTCCGCCACACATTGACCAGGCAATATATTGTAGATAG
Download CDS Sequence

Protein sequence (LotjaGi1g1v0473300.5) extracted from Lotus japonicus Gifu v1.2 Proteins.

MNNNNRARCPPPGIGLGRGNGGGGGGGFNSNPGFQPRPHQQQQQQHQYVQRHMMPNQQQYHQQQHQQNQPQYHQQHQHNQ QQQQQQQQQWLRRTQLGGNDTNVVEEVEKTVQSESADPSSQDWKARLKIPPPDTRYQTEDVTATKGNEFEDYFLKRELLM GIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDHDNNVIQVVILVPTRELALQTSQVCKELGK HLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCILKDCSMLVMDEADKLLSPEFQPSIEQLIQFLSPN RQILMYSATYPVTVKDFKERYLRKPYVINLMDELTLKGITQFYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELL AKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRVGRSGRYGH LGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIYCR
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 90 90 - –
MobiDBLite
mobidb-lite
33 90 58 - –
PANTHER
PTHR24031:SF661
91 506 416 9.9E-258 –
PANTHER
PTHR24031
91 506 416 9.9E-258 –
Gene3D
G3DSA:3.40.50.300
102 351 250 2.2E-66 –
MobiDBLite
mobidb-lite
107 137 31 - –
ProSiteProfiles
PS51195
147 175 29 10.185
IPR014014
CDD
cd17940
149 349 201 4.89904E-142 –
SMART
SM00487
166 362 197 3.9E-56
IPR014001
Pfam
PF00270
172 336 165 5.4E-43
IPR011545
ProSiteProfiles
PS51192
178 348 171 28.661
IPR014001
SUPERFAMILY
SSF52540
217 501 285 2.73E-70
IPR027417
ProSitePatterns
PS00039
294 302 9 -
IPR000629
Gene3D
G3DSA:3.40.50.300
352 521 170 2.9E-54 –
ProSiteProfiles
PS51194
358 518 161 24.013
IPR001650
CDD
cd18787
359 488 130 1.23537E-56 –
Pfam
PF00271
373 479 107 8.4E-28
IPR001650
SMART
SM00490
398 479 82 1.5E-30
IPR001650

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0473300.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…