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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0498200 |
| Transcript ID | LotjaGi1g1v0498200.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Auxin efflux carrier component; TAIR: AT5G15100.1 Auxin efflux carrier family protein; Swiss-Prot: sp|Q9LFP6|PIN8_ARATH Auxin efflux carrier component 8; TrEMBL-Plants: tr|Q5FV66|Q5FV66_MEDTR Auxin efflux carrier component; Found in the gene: LotjaGi1g1v0498200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:101427416..101431074) extracted from Lotus japonicus Gifu genome v1.2.
CTAATACACGTTGGCTCTTACCCATTCAGTATTCAAGGACAAAGTAGCCTAAAAAGCATGTAAGACAGCATAATAAGCTG TGCAGGCCATCATCCCAAACCTTGCAACACAGCTAGGCTAGCCACAATGATTTCCTTAGCAGATGCTTATCATGTGGTGA TAACCACTGTCCCTTTATACGTGACCATGATACTCGCCTACATCTCAGTGAAATGGTGGAAGATTTTCACACCAGATCAA TGTTCAGGCATAAACAAATTTGTGGCCAAATTCTCAGTCCCACTCTTGTCATTTCAAGTCATTTCCTCCAACAACCTCTA CAAAATGAGCATGAAACTCATGTATGCTGATTTTGTTCAGAAACTGCTTGCTTTTCTGGTGTTAACAGCAATCACTAAGA TCAGAGGAAAAGGAGGTTTGAAGTCGATCATAACTGGTTTTTCATTGTCAACACTCCCTAACACTTTGATTCTGGGAATC CCACTCATGAAGGCTATGTATAAGGATGAAGCTGTTGTTTTCATAGCACAGATTATTTTCTTGCAGAGCATGGTATGGTA CAATTTGCTCTTGTTTCTTTATGAGTTTGATGCTGCCAAGAGTACTAGACCTGCTACACCACCTTCACAAGGCACAGGTA AAGAAATAAAGAGTACTTGACCAAATACAAACTTAGATGATTCCTAATTTTCATTTCATCATTTTTTTCTCCTTATCATT AATTGTCCCATAACAAGTACATTCTAAAGCCAAAATTGATATCTATGCATTTGAGATCAGATACATGGATTGAGATTCAA TGTCCTCAAATTTTGTCTCATTTCTTGTTTTTGTCAATGAAATTATCATTACAAAATCGATTGATATGACATTCATAACC TCACATGGATGGTATTTTATTGACATAACATAGCTCATTAGTGGGATAGGTAGTAAGACACCATTTGGGAATTGACAATT TTGATACCGAATACAACCCTATATATATTATTAAATCATGGCTTAAATAAGTTTTTCGTCCCTAACCTTTCCATAATACC TGGTTTTCGTCCCTCGCCGGAGCAAAGGTGGGGTTTAGTCCCTAACCTTTGCCAAAACGTTTGGTTTTCGTCCCTCCGGA GCTCTGGGTCAACGCCGGAGCTCCGGTGGCCCATGTGGCAATGCCACATAGGATTAGTGAGGCCACGTGTTATTATTATT ATTGCTAAATTTTGGATCTCATCCTCATGTATAAAATTGAATTTGGTTTTAGTCCCTGGAATAGTAATCATGATTTGGCA TGCATCCTTACATAGAATATTGATCTGTGTTTTGGTCCCCTATTGAAAGGCTACTTAGGAAGAAAAAACGTGTTAAAGTA TGACAATTGCAAATGCCACAACATAATTTCATGCATAAGTCAATGGTGAAAACTTACTGGAGGGGTTGGAGCTGTTGTTG GTGCCTGGTTTCCAGCTTGCTCCTGTGCTGGTTCTTGAGGATTTGTCACATTCCAGCTTGCTCCTGTGCGTGCTAATGTG GATGGACCACTATTTTTATTGATGTAGCCAAGTTAAGCCACTTGTGCAATTTATGTCTTTGTGGATGGACCACTATCATT TTGTAAGAATATTTTGACTTATGCATGAAATTATGTTGTGGCCTTAGCAATTGTCATACTTTAACACGTTTTTTCTTCCT AAGTAGCCTTTTAATGTCCAATAAGGGACCAAAACACAGATCAATATTCTATGTAAGGATGCATGCCAAATCATGATTAC TATTCCAGGGACTAAAACCAAATTCAATTTTATACATGAGGATGAGATCCAAAATTTAACAATAATAATAATAAAAACAC GTGGCCTCACTAATCCTATGTGGCATTGCCACATGGGCCACCGGAGCTCCGGCGTTGACCCAGAGCTCCGGAGGGACGAA AACCAAACGTTTTGGCAAAGGTTAGGGACTAAACCCCACCTTTGCTCCGGCGAGGGACGAAAACCAGGTATTATGGAAAG GTTAGGGACGAAAAACTTATTTAAGCCTTAAATCATGTAAGCAAAAATAACTTTTGATCAGTTAATCTTGTTCAGCCACG CCACAAAGAGTAATCTAAGACAATCAAAGTGGGATTTTCTTTCTCACTTCATTTATATGCTCTTTTAATTTTAATTTATT CCTCTGGAACACAATTTTGTTGATAAGATATGTCCTTAATTAGTTCTTTAGCAACTATATAAATTAAACTAACGTAACAC GGGTCATATCATTTCTATGTCCCCAAAGAACAGTCCCATAAATGAAAGTGTCATTTGCATTTCCTTACATCCAGTTCTTG ATCTCTGTTTGAAGGAGAAACGGAGACAGCTCGTGAAGTACAATCAAAAAGAGAAGAAGATGAAGAACCAGGAACAAAAA GGAGAGTGAAGATCTTGCCAATTCTTGTCACAGTGGGGAAGAAACTAATCAGAAATCCTAATACCTTTGCAACTTTAATA GGTTTTATTTGGTCATGCATACAATTCAGGTAATAAGCACACTACATTAGAGTTACTCTGCATGACACTTTTAAGTCTTA AAATTAGATCAAAATCTTCTTTCTAGAAATCTTGTCTTAATTTCCTGTCGCACCAAAAATTGGAAGTTACAAACTTACAT GGTAGATTTTAATTGAAATGTAAAAAATTTATTGGTCGGACAAGAAATTGAGACACCATTTGGGAACAGAAGATTTCAAT CCCTTAAAATGTTCAGCCCATCCTTATCATTCCAAGAGATACTTGTTTTCTAATTAATAGCATGTTGCAGGTGGGGAATA CATATGCCTGAAATGGTTAATCAGTCAATAGAATTATTGTCCAATGGAGGTCTTGGTATGGCAATGTTCAGCTTAGGTAT GTTAAATTAATTGATCTATGTATATACATGGTTTCCTATTATGAACTTCATAAAATAACAATATCCAAATTCTAGAATTT CATTTAACAAGTGTTCTGTATTTCCTGGTGTACATTTATGATCAGGTTTGTTCATGGCATCACAGTCAAGCATTATAGCA TGTGGGCCATGGTTAGCAATGGTGGCAATAGGACTCAAAATTGTGGTAGGACCTGGCTTAATGGCTGTGGCATCCCTTGT CACTGGACTAAGAAACACATTGTTTAAAGTGGCAATTGTTCAGGTTCTATATCTTGTTTTTTCTTTCTTTTCATTACCAC TTTTCAGATCATTTTAAAGGTCATAAATAGTGTGATTAATTTGCATGTGGCAGGCAGCACTACCACAAGGAATTGTTCCT TTTGTTTTTGCCAAAGAGTATAATGTCCATCCAGTGATTTTAAGCACTGCGTAAGTAAAGCCAGAGCATCTCTTTAGTAA CCTTTGCAGACATGTCTTGCTTGAGGTTTGATGCTGTTCTTGTTTTGCATTACAGGATCTTGTTAGGGATGCTCATTGCC TTGCCGGTGGAATTGGCCTTTTACTTCCTCTTAGCACTATAAAGGGTTGTGTTAAATATATGGGCAGTTAGATTACTGGA AAATAGTTCATACTTCATACACTTCTAATATGTTAAAAATCCTTCTAATATTGATTCTATATAAAGCCAAAATCAGTTGA GGAGCTTCTGTGTGTAGCTTCTTGTGCAAAAATTGATTCTAAGGAAAAATATATTAATC
CDS sequence (LotjaGi1g1v0498200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATTTCCTTAGCAGATGCTTATCATGTGGTGATAACCACTGTCCCTTTATACGTGACCATGATACTCGCCTACATCTC AGTGAAATGGTGGAAGATTTTCACACCAGATCAATGTTCAGGCATAAACAAATTTGTGGCCAAATTCTCAGTCCCACTCT TGTCATTTCAAGTCATTTCCTCCAACAACCTCTACAAAATGAGCATGAAACTCATGTATGCTGATTTTGTTCAGAAACTG CTTGCTTTTCTGGTGTTAACAGCAATCACTAAGATCAGAGGAAAAGGAGGTTTGAAGTCGATCATAACTGGTTTTTCATT GTCAACACTCCCTAACACTTTGATTCTGGGAATCCCACTCATGAAGGCTATGTATAAGGATGAAGCTGTTGTTTTCATAG CACAGATTATTTTCTTGCAGAGCATGGTATGGTACAATTTGCTCTTGTTTCTTTATGAGTTTGATGCTGCCAAGAGTACT AGACCTGCTACACCACCTTCACAAGGCACAGGAGAAACGGAGACAGCTCGTGAAGTACAATCAAAAAGAGAAGAAGATGA AGAACCAGGAACAAAAAGGAGAGTGAAGATCTTGCCAATTCTTGTCACAGTGGGGAAGAAACTAATCAGAAATCCTAATA CCTTTGCAACTTTAATAGGTTTTATTTGGTCATGCATACAATTCAGGTGGGGAATACATATGCCTGAAATGGTTAATCAG TCAATAGAATTATTGTCCAATGGAGGTCTTGGTATGGCAATGTTCAGCTTAGGTTTGTTCATGGCATCACAGTCAAGCAT TATAGCATGTGGGCCATGGTTAGCAATGGTGGCAATAGGACTCAAAATTGTGGTAGGACCTGGCTTAATGGCTGTGGCAT CCCTTGTCACTGGACTAAGAAACACATTGTTTAAAGTGGCAATTGTTCAGGCAGCACTACCACAAGGAATTGTTCCTTTT GTTTTTGCCAAAGAGTATAATGTCCATCCAGTGATTTTAAGCACTGCGATCTTGTTAGGGATGCTCATTGCCTTGCCGGT GGAATTGGCCTTTTACTTCCTCTTAGCACTATAA
Protein sequence (LotjaGi1g1v0498200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MISLADAYHVVITTVPLYVTMILAYISVKWWKIFTPDQCSGINKFVAKFSVPLLSFQVISSNNLYKMSMKLMYADFVQKL LAFLVLTAITKIRGKGGLKSIITGFSLSTLPNTLILGIPLMKAMYKDEAVVFIAQIIFLQSMVWYNLLLFLYEFDAAKST RPATPPSQGTGETETAREVQSKREEDEEPGTKRRVKILPILVTVGKKLIRNPNTFATLIGFIWSCIQFRWGIHMPEMVNQ SIELLSNGGLGMAMFSLGLFMASQSSIIACGPWLAMVAIGLKIVVGPGLMAVASLVTGLRNTLFKVAIVQAALPQGIVPF VFAKEYNVHPVILSTAILLGMLIALPVELAFYFLLAL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| TIGRFAM | 1 | 357 | 357 | 2.6E-96 | ||
| PANTHER | 1 | 357 | 357 | 9.4E-219 | – | |
| Phobius | 1 | 6 | 6 | - | – | |
| PANTHER | 1 | 357 | 357 | 9.4E-219 | – | |
| TMHMM | 7 | 26 | 20 | - | – | |
| Phobius | 7 | 28 | 22 | - | – | |
| Pfam | 9 | 351 | 343 | 4.4E-97 | ||
| Phobius | 29 | 70 | 42 | - | – | |
| Phobius | 71 | 89 | 19 | - | – | |
| TMHMM | 71 | 90 | 20 | - | – | |
| Phobius | 90 | 100 | 11 | - | – | |
| TMHMM | 97 | 119 | 23 | - | – | |
| Phobius | 101 | 120 | 20 | - | – | |
| Phobius | 121 | 131 | 11 | - | – | |
| TMHMM | 129 | 151 | 23 | - | – | |
| Phobius | 132 | 152 | 21 | - | – | |
| Phobius | 153 | 214 | 62 | - | – | |
| MobiDBLite | 162 | 190 | 29 | - | – | |
| MobiDBLite | 176 | 190 | 15 | - | – | |
| Phobius | 215 | 232 | 18 | - | – | |
| Phobius | 233 | 243 | 11 | - | – | |
| TMHMM | 242 | 264 | 23 | - | – | |
| Phobius | 244 | 262 | 19 | - | – | |
| Phobius | 263 | 273 | 11 | - | – | |
| Phobius | 274 | 296 | 23 | - | – | |
| TMHMM | 274 | 296 | 23 | - | – | |
| Phobius | 297 | 301 | 5 | - | – | |
| Phobius | 302 | 323 | 22 | - | – | |
| TMHMM | 303 | 322 | 20 | - | – | |
| Phobius | 324 | 329 | 6 | - | – | |
| Phobius | 330 | 355 | 26 | - | – | |
| TMHMM | 332 | 354 | 23 | - | – | |
| Phobius | 356 | 357 | 2 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi1g1v0498200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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