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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0498200 |
| Transcript ID | LotjaGi1g1v0498200.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Auxin efflux carrier component; TAIR: AT5G15100.1 Auxin efflux carrier family protein; Swiss-Prot: sp|Q9LFP6|PIN8_ARATH Auxin efflux carrier component 8; TrEMBL-Plants: tr|Q5FV66|Q5FV66_MEDTR Auxin efflux carrier component; Found in the gene: LotjaGi1g1v0498200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:101427593..101430948) extracted from Lotus japonicus Gifu genome v1.2.
ATGATTTCCTTAGCAGATGCTTATCATGTGGTGATAACCACTGTCCCTTTATACGTGACCATGATACTCGCCTACATCTC AGTGAAATGGTGGAAGATTTTCACACCAGATCAATGTTCAGGCATAAACAAATTTGTGGCCAAATTCTCAGTCCCACTCT TGTCATTTCAAGTCATTTCCTCCAACAACCTCTACAAAATGAGCATGAAACTCATGTATGCTGATTTTGTTCAGAAACTG CTTGCTTTTCTGGTGTTAACAGCAATCACTAAGATCAGAGGAAAAGGAGGTTTGAAGTCGATCATAACTGGTTTTTCATT GTCAACACTCCCTAACACTTTGATTCTGGGAATCCCACTCATGAAGGCTATGTATAAGGATGAAGCTGTTGTTTTCATAG CACAGATTATTTTCTTGCAGAGCATGGTATGGTACAATTTGCTCTTGTTTCTTTATGAGTTTGATGCTGCCAAGAGTACT AGACCTGCTACACCACCTTCACAAGGCACAGGTAAAGAAATAAAGAGTACTTGACCAAATACAAACTTAGATGATTCCTA ATTTTCATTTCATCATTTTTTTCTCCTTATCATTAATTGTCCCATAACAAGTACATTCTAAAGCCAAAATTGATATCTAT GCATTTGAGATCAGATACATGGATTGAGATTCAATGTCCTCAAATTTTGTCTCATTTCTTGTTTTTGTCAATGAAATTAT CATTACAAAATCGATTGATATGACATTCATAACCTCACATGGATGGTATTTTATTGACATAACATAGCTCATTAGTGGGA TAGGTAGTAAGACACCATTTGGGAATTGACAATTTTGATACCGAATACAACCCTATATATATTATTAAATCATGGCTTAA ATAAGTTTTTCGTCCCTAACCTTTCCATAATACCTGGTTTTCGTCCCTCGCCGGAGCAAAGGTGGGGTTTAGTCCCTAAC CTTTGCCAAAACGTTTGGTTTTCGTCCCTCCGGAGCTCTGGGTCAACGCCGGAGCTCCGGTGGCCCATGTGGCAATGCCA CATAGGATTAGTGAGGCCACGTGTTATTATTATTATTGCTAAATTTTGGATCTCATCCTCATGTATAAAATTGAATTTGG TTTTAGTCCCTGGAATAGTAATCATGATTTGGCATGCATCCTTACATAGAATATTGATCTGTGTTTTGGTCCCCTATTGA AAGGCTACTTAGGAAGAAAAAACGTGTTAAAGTATGACAATTGCAAATGCCACAACATAATTTCATGCATAAGTCAATGG TGAAAACTTACTGGAGGGGTTGGAGCTGTTGTTGGTGCCTGGTTTCCAGCTTGCTCCTGTGCTGGTTCTTGAGGATTTGT CACATTCCAGCTTGCTCCTGTGCGTGCTAATGTGGATGGACCACTATTTTTATTGATGTAGCCAAGTTAAGCCACTTGTG CAATTTATGTCTTTGTGGATGGACCACTATCATTTTGTAAGAATATTTTGACTTATGCATGAAATTATGTTGTGGCCTTA GCAATTGTCATACTTTAACACGTTTTTTCTTCCTAAGTAGCCTTTTAATGTCCAATAAGGGACCAAAACACAGATCAATA TTCTATGTAAGGATGCATGCCAAATCATGATTACTATTCCAGGGACTAAAACCAAATTCAATTTTATACATGAGGATGAG ATCCAAAATTTAACAATAATAATAATAAAAACACGTGGCCTCACTAATCCTATGTGGCATTGCCACATGGGCCACCGGAG CTCCGGCGTTGACCCAGAGCTCCGGAGGGACGAAAACCAAACGTTTTGGCAAAGGTTAGGGACTAAACCCCACCTTTGCT CCGGCGAGGGACGAAAACCAGGTATTATGGAAAGGTTAGGGACGAAAAACTTATTTAAGCCTTAAATCATGTAAGCAAAA ATAACTTTTGATCAGTTAATCTTGTTCAGCCACGCCACAAAGAGTAATCTAAGACAATCAAAGTGGGATTTTCTTTCTCA CTTCATTTATATGCTCTTTTAATTTTAATTTATTCCTCTGGAACACAATTTTGTTGATAAGATATGTCCTTAATTAGTTC TTTAGCAACTATATAAATTAAACTAACGTAACACGGGTCATATCATTTCTATGTCCCCAAAGAACAGTCCCATAAATGAA AGTGTCATTTGCATTTCCTTACATCCAGTTCTTGATCTCTGTTTGAAGGAGAAACGGAGACAGCTCGTGAAGTACAATCA AAAAGAGAAGAAGATGAAGAACCAGGAACAAAAAGGAGAGTGAAGATCTTGCCAATTCTTGTCACAGTGGGGAAGAAACT AATCAGAAATCCTAATACCTTTGCAACTTTAATAGGTTTTATTTGGTCATGCATACAATTCAGGTAATAAGCACACTACA TTAGAGTTACTCTGCATGACACTTTTAAGTCTTAAAATTAGATCAAAATCTTCTTTCTAGAAATCTTGTCTTAATTTCCT GTCGCACCAAAAATTGGAAGTTACAAACTTACATGGTAGATTTTAATTGAAATGTAAAAAATTTATTGGTCGGACAAGAA ATTGAGACACCATTTGGGAACAGAAGATTTCAATCCCTTAAAATGTTCAGCCCATCCTTATCATTCCAAGAGATACTTGT TTTCTAATTAATAGCATGTTGCAGGTGGGGAATACATATGCCTGAAATGGTTAATCAGTCAATAGAATTATTGTCCAATG GAGGTCTTGGTATGGCAATGTTCAGCTTAGGTATGTTAAATTAATTGATCTATGTATATACATGGTTTCCTATTATGAAC TTCATAAAATAACAATATCCAAATTCTAGAATTTCATTTAACAAGTGTTCTGTATTTCCTGGTGTACATTTATGATCAGG TTTGTTCATGGCATCACAGTCAAGCATTATAGCATGTGGGCCATGGTTAGCAATGGTGGCAATAGGACTCAAAATTGTGG TAGGACCTGGCTTAATGGCTGTGGCATCCCTTGTCACTGGACTAAGAAACACATTGTTTAAAGTGGCAATTGTTCAGGTT CTATATCTTGTTTTTTCTTTCTTTTCATTACCACTTTTCAGATCATTTTAAAGGTCATAAATAGTGTGATTAATTTGCAT GTGGCAGGCAGCACTACCACAAGGAATTGTTCCTTTTGTTTTTGCCAAAGAGTATAATGTCCATCCAGTGATTTTAAGCA CTGCGTAAGTAAAGCCAGAGCATCTCTTTAGTAACCTTTGCAGACATGTCTTGCTTGAGGTTTGATGCTGTTCTTGTTTT GCATTACAGGATCTTGTTAGGGATGCTCATTGCCTTGCCGGTGGAATTGGCCTTTTACTTCCTCTTAGCACTATAA
CDS sequence (LotjaGi1g1v0498200.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGATTTCCTTAGCAGATGCTTATCATGTGGTGATAACCACTGTCCCTTTATACGTGACCATGATACTCGCCTACATCTC AGTGAAATGGTGGAAGATTTTCACACCAGATCAATGTTCAGGCATAAACAAATTTGTGGCCAAATTCTCAGTCCCACTCT TGTCATTTCAAGTCATTTCCTCCAACAACCTCTACAAAATGAGCATGAAACTCATGTATGCTGATTTTGTTCAGAAACTG CTTGCTTTTCTGGTGTTAACAGCAATCACTAAGATCAGAGGAAAAGGAGGTTTGAAGTCGATCATAACTGGTTTTTCATT GTCAACACTCCCTAACACTTTGATTCTGGGAATCCCACTCATGAAGGCTATGTATAAGGATGAAGCTGTTGTTTTCATAG CACAGATTATTTTCTTGCAGAGCATGGTATGGTACAATTTGCTCTTGTTTCTTTATGAGTTTGATGCTGCCAAGAGTACT AGACCTGCTACACCACCTTCACAAGGCACAGGTAAAGAAATAAAGAGAGAAACGGAGACAGCTCGTGAAGTACAATCAAA AAGAGAAGAAGATGAAGAACCAGGAACAAAAAGGAGAGTGAAGATCTTGCCAATTCTTGTCACAGTGGGGAAGAAACTAA TCAGAAATCCTAATACCTTTGCAACTTTAATAGGTTTTATTTGGTCATGCATACAATTCAGGTGGGGAATACATATGCCT GAAATGGTTAATCAGTCAATAGAATTATTGTCCAATGGAGGTCTTGGTATGGCAATGTTCAGCTTAGGTTTGTTCATGGC ATCACAGTCAAGCATTATAGCATGTGGGCCATGGTTAGCAATGGTGGCAATAGGACTCAAAATTGTGGTAGGACCTGGCT TAATGGCTGTGGCATCCCTTGTCACTGGACTAAGAAACACATTGTTTAAAGTGGCAATTGTTCAGGCAGCACTACCACAA GGAATTGTTCCTTTTGTTTTTGCCAAAGAGTATAATGTCCATCCAGTGATTTTAAGCACTGCGATCTTGTTAGGGATGCT CATTGCCTTGCCGGTGGAATTGGCCTTTTACTTCCTCTTAGCACTATAA
Protein sequence (LotjaGi1g1v0498200.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MISLADAYHVVITTVPLYVTMILAYISVKWWKIFTPDQCSGINKFVAKFSVPLLSFQVISSNNLYKMSMKLMYADFVQKL LAFLVLTAITKIRGKGGLKSIITGFSLSTLPNTLILGIPLMKAMYKDEAVVFIAQIIFLQSMVWYNLLLFLYEFDAAKST RPATPPSQGTGKEIKRETETAREVQSKREEDEEPGTKRRVKILPILVTVGKKLIRNPNTFATLIGFIWSCIQFRWGIHMP EMVNQSIELLSNGGLGMAMFSLGLFMASQSSIIACGPWLAMVAIGLKIVVGPGLMAVASLVTGLRNTLFKVAIVQAALPQ GIVPFVFAKEYNVHPVILSTAILLGMLIALPVELAFYFLLAL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| TIGRFAM | 1 | 362 | 362 | 3.0E-96 | ||
| Phobius | 1 | 6 | 6 | - | – | |
| PANTHER | 1 | 362 | 362 | 8.4E-216 | – | |
| PANTHER | 1 | 362 | 362 | 8.4E-216 | – | |
| TMHMM | 7 | 26 | 20 | - | – | |
| Phobius | 7 | 28 | 22 | - | – | |
| Pfam | 9 | 356 | 348 | 5.4E-99 | ||
| Phobius | 29 | 70 | 42 | - | – | |
| TMHMM | 71 | 90 | 20 | - | – | |
| Phobius | 71 | 89 | 19 | - | – | |
| Phobius | 90 | 100 | 11 | - | – | |
| TMHMM | 97 | 119 | 23 | - | – | |
| Phobius | 101 | 120 | 20 | - | – | |
| Phobius | 121 | 131 | 11 | - | – | |
| TMHMM | 129 | 151 | 23 | - | – | |
| Phobius | 132 | 152 | 21 | - | – | |
| Phobius | 153 | 219 | 67 | - | – | |
| MobiDBLite | 159 | 195 | 37 | - | – | |
| MobiDBLite | 172 | 195 | 24 | - | – | |
| Phobius | 220 | 237 | 18 | - | – | |
| Phobius | 238 | 248 | 11 | - | – | |
| TMHMM | 247 | 269 | 23 | - | – | |
| Phobius | 249 | 267 | 19 | - | – | |
| Phobius | 268 | 278 | 11 | - | – | |
| Phobius | 279 | 301 | 23 | - | – | |
| TMHMM | 279 | 301 | 23 | - | – | |
| Phobius | 302 | 306 | 5 | - | – | |
| Phobius | 307 | 328 | 22 | - | – | |
| TMHMM | 308 | 327 | 20 | - | – | |
| Phobius | 329 | 334 | 6 | - | – | |
| Phobius | 335 | 360 | 26 | - | – | |
| TMHMM | 337 | 359 | 23 | - | – | |
| Phobius | 361 | 362 | 2 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi1g1v0498200.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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