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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0505000 |
| Transcript ID | LotjaGi1g1v0505000.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Expansin protein; TAIR: AT1G69530.1 expansin A1; Swiss-Prot: sp|Q9C554|EXPA1_ARATH Expansin-A1; TrEMBL-Plants: tr|G7L212|G7L212_MEDTR Expansin A10; Found in the gene: LotjaGi1g1v0505000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:102289912..102292458) extracted from Lotus japonicus Gifu genome v1.2.
TGTCATTCTGTCTGTCAGGTTTGATAGCTGACCTCTATTTATTCCTCTCCAATTCCCCATCCATTTTCCACAAACATCTC ATTTCAAGGTTCAGCTTCTTGTAATAACTGATTCTCTATCCCTTTTGTTCTTCCTTTCTTTTTTCTCTTTTCACTTCTTC ATAGAGTGTTATTAACTGCTCTAGTTGCATAGCTACCAAATCAGTATTATTAACACTCTAATGTTGCATTTATGCAGGAA AATGGCTCTTCTTGGATTTCTAATTCTTCTGGGGATTTTCTCCTTTGTCTCACATGTAAATGGGTATGGTTATGGGGGTT GGACTAATGCTCATGCCACTTTCTATGGTGGAAGTGATGCTTCTGGGACAATGGGTATGTCTGCACAAATGTAACTCACA TTAAGTTTTTCATAGTTGTGCTTAGGTTCTTTACTCTCTGCATAACATCAATATAGGCGTACTTTAGGCTCTTCTTAAAA CTCGGCTTATGCCTTACTCAACCCAAAAAGCTAGCTTAGGGTAAAGACTGTTCTACTCTATATAAACACTTATCTAGTCA CATGTTCCGCCAACACGAGACTTCTCAATAGTTATTAATGATTCATAACATCTATTTATGTCAAATTTGTAGGTGGGGCT TGTGGGTATGGAAATCTAATCAGCCAAGGTTATGGAACTAATACAGCAGCACTTAGCACTGCATTGTTCAACAGTGGCTT GAGCTGTGGAGCATGTTTTCAAATTAAATGTGTGAATGACCCTCAATGGTGCCTTCCTGGTTCCATTGTAGTCACTGCCA CCAATTTCTGCCCACCAGGTGGTTGGTGTGACCCTCCCAATCACCATTTTGATCTTTCTCAACCTATTTTCCAGCACATT GCACAATATAAGGCTGGGATTGTACCTGTAGCATACAGAAGGTAACTTCAGATTCTCATTTCCTTTTACCAGAGCCATTT AGTGCATGTTTGGTTACACAACGCTCATCCACATACGTACTTGTAATATTCTCAAACGTGGTTTTTCGTTATCAGAACAT GTTGGGTAAAATTCTTAGAAACACTTCAGTCGAACAAAACAATGTTCAGGCTAAAGCAAAAAGACCAAACTTTTGAGTTA ACATGAAAGTACTTTTAGCTCTTCTCACAAGACATTTCTATTATTTTCCTATAAAAATCACTTTGCCAGAAAATGTATAC ATATCAATCACATCACTTTCAAATCACCTATACCATATCAATTTTGCCGAATCAATTCTATCCAAAATTACTTTTGTCAA TGTTTAGTCCGTGTTTGGATCAACGCTAACATAATTGATTCTAGTAAAATTGCGTATGATAAATATGAGCTAAAATAATG TAATTTATGTTTGGTTACATTTATGAAAAAAGTGACTTTTGTAGAGTAGTATTGTGAAATTCAGTTGTAAAATCTTAGAG CTGATGATATTCAACACAAAAACTACTCTTCTTAGCTTCTATCAGAACAGAACTGAGACTGAAATCAATTCTCCAAAACT GATTTTGCTTTAACAGAATTTTGATTCTAAAGTTCCCTAATGTGGAACCAAATACACTCTAAACATGTACCAACTTTTGG CCTTGAAGCTGAAATTCTTATTTTTTTTCTCGTTCGTGGATTTTGAAGGGTAAGATGCAGGAGAAAAGATGGCATCAGGT TCACCATCAATGGTCATTCTTACTTCAATTTAGTCCTTGTGACTAATGTTGGAGGTGCTGGTGATGTGCATGCTGTGGCC ATCAAAGGTTCAAGAACAAGATGGCAGGCCATGTCAAGGAACTGGGGGCAAAACTGGCAGAGCAACTCTTACCTGAATGG ACAGAGTCTTTCCTTTGTAGTCACCACCAGTAATGGCCACAGCGTGGTCTCCTTCAATGTTGCCCCAGCTAGTTGGTCCT TTGGGCAGACCTACACTGGAAGACAGTTCAACTACTAAAATGTCTTTCAGTTGAGCATCTTTTCAATAATGTTATTGATA GTACGTTTGTATCAACTTATTTTTTCATAGAATCAATTCTGAAACCTAGAAACCACTCAGAGAAGCTTTTTTCCCATAAT TGGTTCTGGTTTCAGAGTCAATTATTGAAGGGTTTCCAAATATGTAATAAGTATCTCAACATTACTGTTAAAAGAAGCAA GGTATAGTTGATTAGTGTATTAGTGTAGATGGATTAGCAGAGGGCTGAATAGAAGATGGTTTAGCCCCTCTTATACATAT ATTTGGTTTATATATAGCAAGAATTTGCAGATGATGTGCTGGTTTATGCTATGCCTCAGCAAATGGTATACTTGCTTTGT TGAGGAAGCTAGATCAATAATCAAAAGATTGTTGAATGTGCTCTTGTACTTTAGTAATTGATCAATGAATGAGAAAAGTC ATGTTTGTTGCTCTATTTTTGTCTTTATTACTTTTGGACAACTCAGTCTAGTATTCATATGGACTACTCAGTCACTAACT CACAAATTATAATCAGTGATGCTCTGAAAATTTTAAATAAGTATAATAAAAATAGCTCATTCATCTA
CDS sequence (LotjaGi1g1v0505000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTCTTCTTGGATTTCTAATTCTTCTGGGGATTTTCTCCTTTGTCTCACATGTAAATGGGTATGGTTATGGGGGTTG GACTAATGCTCATGCCACTTTCTATGGTGGAAGTGATGCTTCTGGGACAATGGGTGGGGCTTGTGGGTATGGAAATCTAA TCAGCCAAGGTTATGGAACTAATACAGCAGCACTTAGCACTGCATTGTTCAACAGTGGCTTGAGCTGTGGAGCATGTTTT CAAATTAAATGTGTGAATGACCCTCAATGGTGCCTTCCTGGTTCCATTGTAGTCACTGCCACCAATTTCTGCCCACCAGG TGGTTGGTGTGACCCTCCCAATCACCATTTTGATCTTTCTCAACCTATTTTCCAGCACATTGCACAATATAAGGCTGGGA TTGTACCTGTAGCATACAGAAGGGTAAGATGCAGGAGAAAAGATGGCATCAGGTTCACCATCAATGGTCATTCTTACTTC AATTTAGTCCTTGTGACTAATGTTGGAGGTGCTGGTGATGTGCATGCTGTGGCCATCAAAGGTTCAAGAACAAGATGGCA GGCCATGTCAAGGAACTGGGGGCAAAACTGGCAGAGCAACTCTTACCTGAATGGACAGAGTCTTTCCTTTGTAGTCACCA CCAGTAATGGCCACAGCGTGGTCTCCTTCAATGTTGCCCCAGCTAGTTGGTCCTTTGGGCAGACCTACACTGGAAGACAG TTCAACTACTAA
Protein sequence (LotjaGi1g1v0505000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MALLGFLILLGIFSFVSHVNGYGYGGWTNAHATFYGGSDASGTMGGACGYGNLISQGYGTNTAALSTALFNSGLSCGACF QIKCVNDPQWCLPGSIVVTATNFCPPGGWCDPPNHHFDLSQPIFQHIAQYKAGIVPVAYRRVRCRRKDGIRFTINGHSYF NLVLVTNVGGAGDVHAVAIKGSRTRWQAMSRNWGQNWQSNSYLNGQSLSFVVTTSNGHSVVSFNVAPASWSFGQTYTGRQ FNY
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP_EUK | 1 | 21 | 21 | - | – | |
| PANTHER | 1 | 242 | 242 | 3.4E-150 | – | |
| PANTHER | 1 | 242 | 242 | 3.4E-150 | – | |
| Phobius | 1 | 1 | 1 | - | – | |
| Phobius | 1 | 21 | 21 | - | – | |
| Phobius | 2 | 13 | 12 | - | – | |
| SUPERFAMILY | 10 | 167 | 158 | 7.67E-54 | ||
| Phobius | 14 | 21 | 8 | - | – | |
| Gene3D | 16 | 145 | 130 | 5.0E-45 | ||
| Phobius | 22 | 243 | 222 | - | – | |
| PRINTS | 26 | 41 | 16 | 2.4E-49 | ||
| PRINTS | 44 | 62 | 19 | 2.4E-49 | ||
| ProSiteProfiles | 45 | 149 | 105 | 30.094 | ||
| PRINTS | 57 | 71 | 15 | 9.4E-81 | ||
| Pfam | 62 | 139 | 78 | 3.8E-24 | ||
| SMART | 62 | 139 | 78 | 1.3E-47 | ||
| PRINTS | 66 | 84 | 19 | 2.4E-49 | ||
| PRINTS | 84 | 95 | 12 | 9.4E-81 | ||
| PRINTS | 96 | 106 | 11 | 9.4E-81 | ||
| PRINTS | 107 | 124 | 18 | 9.4E-81 | ||
| PRINTS | 124 | 137 | 14 | 9.4E-81 | ||
| PRINTS | 132 | 148 | 17 | 2.4E-49 | ||
| SUPERFAMILY | 147 | 238 | 92 | 9.94E-34 | ||
| PRINTS | 148 | 160 | 13 | 9.4E-81 | ||
| Gene3D | 149 | 242 | 94 | 4.2E-24 | ||
| Pfam | 150 | 227 | 78 | 2.7E-28 | ||
| ProSiteProfiles | 159 | 238 | 80 | 22.068 | ||
| PRINTS | 160 | 181 | 22 | 9.4E-81 | ||
| PRINTS | 186 | 200 | 15 | 2.4E-49 | ||
| PRINTS | 195 | 216 | 22 | 9.4E-81 | ||
| PRINTS | 224 | 238 | 15 | 2.4E-49 | ||
| PRINTS | 224 | 240 | 17 | 9.4E-81 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Extracellular region | The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite. | ||
| Biological process | Plant-type cell wall organization | A process that results in the assembly and arrangement of constituent parts of the cellulose and pectin-containing cell wall, or in the disassembly of the cellulose and pectin-containing cell wall. This process is carried out at the cellular level. An example of this process is found in Arabidopsis thaliana. |
Expression pattern of LotjaGi1g1v0505000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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