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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0525700 |
| Transcript ID | LotjaGi1g1v0525700.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 60S ribosomal protein L30; TAIR: AT1G36240.1 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein; Swiss-Prot: sp|O49884|RL30_LUPLU 60S ribosomal protein L30; TrEMBL-Plants: tr|I3S9Q1|I3S9Q1_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0525700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:105258975..105263578) extracted from Lotus japonicus Gifu genome v1.2.
AATATAAAACTAAACCACATTTTCAAGAGCGACGACTTTTTTCAATATCTTCACCCCTCTCTCTCTCTCTCAACATTCTT AACAAAATATGGATAATCAATCAAAACACAGTCATCCAATTAGAATCCATTAATTTATCATGCCATAACTAAATTTAATT TTAAAATACTTAATTAGATGTATGTATAAAACTCTTTACGTCGGCGGTGCACAACGATTAAAAAATTGAATTTCTTTTGT CAATATAGGAATTTTATGAAGCCCAAGCTCTAAATAAAGATCCAGCCCAATCAAACTAGCACAAAACCGTGAGCCGCAGC TTTCACCACCACCGTGAACTAGGGGGTTCATCTTCTCTGCACTCAACCCAGCAACAATGGTTGCCGCCAAGAAAACCGTA CACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGCACACACTGTTGTTGATTTGTTAACATGGTTCCCTTTGTCAAT TGGTTTCAGATTCAGTGTTTTTCGATCCCAACTCGATTTTAACTGGTTTCTCTCATTTTCTTTCCCCTCTTGTATATGAA TGATTACAGAAGAAGACCCATGAGAGCATTAACAACAGGCTCGCTCTGGTGATGAAGAGTGGCAAATATACTCTAGGTTA CAAAACTGTTCTCAAATCACTGAGAAGTTCCAAAGGTATATTACTTTTCTGTTATTTACAGTGATCTGATCTCTGAGTTT TGTATTTTTTTTTAGCTTTTGTTGTTGAATGATTTGCTAGTAGTTAGTGAATGATGATTTCTGAATGTTCTTCAATTCCT TGCAGGGAAACTGATTATCATTGCCAACAATTGCCCACCTTTGAGGAAGTCAGAGATTGAGTATTATGCTATGTTGGCAA AGGTTGGAGTTCATCACTACAATGGGAGTAAGTTCTTAATCTATTGCCATTCTTCTCTTTTTTCTTCAAATGGTTTTTTT ATCCATTTGATAGTTTAATAACTTGCTTGTGGGGTGTGATGTGGGGCTATGGACTTCAAATGTGTTTGGTTGATGTAATC TTATTAGATTTAACTTGGGATACTATGGTTGGGAATTGGGATCAATGGTTTGTCCTGTTGAGGCTTTTCTTTTCTTGTGA ATTCGAGTCTTACGGCACTTAGGTGAATAATGGTTGCAAGTAAACAATGGTCATGGTCTAATTTTAAATGTCAATTATGT AGAAAGAAACATTAGTTTAAGTCATGTGAGTCAATGTCTTCCAGCATACCTTGTACCTTGGTTTCAATGGACTTGGGCGT TAAGACATAAATGAATTTATATAATCTGAACATAAGCTTTGATAGAAATAGTTATTGCTGTAACAGCTTCAGGTTAACAC AGCTCAACAGCTGCATCTGAAACTATTTAGAAGTATGTGAGTTTTCCAAAAAAAAATTGTTTTTTTATCAATTCAGCAAT AAGTATTTTGATAATTATGCTTGTTGTAGGGGTTGCTGACTTTGATATGTGCCTGCTATTATATTTGTTGTGCTGTGATT TTTCTGACTGACTTCGTTTGTTGAATGCAATGATGTGGTAGAATTTATATTATACTCACGCTTTATCAACTCTCCTAATG TTTTTAATTAAAATTTTTTAACGAAGTGTTTATTGTTTATCATAGACAATGTTGATCTGGGCACTGCATGCGGCAAATAC TACAGAGTGTGCTGCCTCAGCATTATCGATCCTGGTATATGATGCTTCTCATTACTTTCTTTACTTAACATTGGAAACTA GTTTTTTGTTTCTGATTTTCTTTGTTTTTTTCATTTTTCAGGTGATTCTGATATCATAAAGACATTGCCCAGTGACCAGT AAAGCTGTCTCGAAGAATTTTGCTTGATGTTTTTCTTTTCTGAGTTATTTAGATATTTGTGAAAGAAAAACTGGTTTAGT TGTTTGTAGACTCTGATGTAGGGCATGGTTCTTGGTTATTCCAGCCTGTTGAGCATCGAGTAGTTTTGACAATTCAAAAT TTTCTGGTTCATTGTGCCAATTTCTATATGGATAATATCATAATATTCTAGTTTGATCGTACATGCTGCTAATGCTAGAA AGTTTATGCTTCTGTTCTCGACAGAGAAAGGAGAGGAAACAAGCGATTAGTACTCTCTGATCTATTCATATAGTTTAACA ACAGAAAAGCCTTGAAGTAGTTAAGTTGTGTGTAGATATTTGTTGGCACTGGATAACACACACTTAAAGTTAAAATGTGA ACTAAACTCTTTTATAGTTTGATCATGTTATACTCAACTACTATTCAAACATACACTCATAGTGTTTGATTAGCTGTATG GTCAAGTGAATAACAGGAGGGACACTCATCCTGGCATCAACAGCTGTTTTTAAATGCTCAATAAAAATAATTTAGCCAAT ATCTATTTTTCCAAAGAACAATCATATAAAAGGCTTTCTAAAAATCATCATTAAAATCATAAAATCACAGTTCAAAAGAA GTGAAGCTCCCATGAGGCAAACCAGATACCCACCTACTGGTCTCAACTACATGAAAAGCTTAATTATCACAAGAATTCAT GCTATGTTCGCAAACTAATGAATAGAGAACCAAAAGCTCAACAAGAGCAATACAAAAATTAGAGCTGGCATTGTATCTGG TTTATTCTTTCTGCCAACAAATTACTTTTAAGATTTCCATTAACTCAACCGATATCACTTAACTCACTACACCATGCCAT TCCCATCAATGCAAAACCAATAACTAAGCACATTTCCACAAGTCAGTCCTAACTAGAAATATCCATTGTCAAGATAGAGA AGAATGGGCACCAGATAGAGAAGAGACAAAACTTGCAGGCTTGCAGCAGCAAAGAATGCAATCACCAAATTCAAGTAGCA ATGCAACACTAGCTATAACAATCTAGCCAAAACTGCCATCATATACAATGTGCATAAATAAGCTTAAACTACACTCATAA TCCAAAATCCCAATGTGAAAAACAAAACTACATTGAGACCTGAAACATCAAACTAAATCCATCCTCAAAACCAGTATCCA AAAGTGATTACAAAACAAATTAAAACTAAAAAATAAATTGATCTTTTCATGGTTGTACCAAGGCATTCCCAACATCGAGC CGACAGACATGAGACTAATCCATAGTAAAAAATCAATTCATCTTGTTATTCATTTTCTTGACAAGTTGTCCCATTTGAAA CCTCCAAAACAAGAAATAAGCCATTCCAAGACCAATCAAAACAAAAATCCAAACATTCTCATCTTGCCCTTCCTTCTTTG ATCTCACCTCAGCAATCCCAAAACTCTCCCTCTTTGAACCCTCCACCCTCCCTTCATTCAAGTGCCCATACAACACATAC ACCCTCCTCTTCTCCCCCATCGCCACCGACGTCGGAAACCGCCGCAAATCAAGCTCCACCTGATCGTACACCACCCCCTC CGCCCAGCTATCCTGGCTCTTCAGGAACCACAGCTTGTTCACCGGCGACACCGCCACCACCACGCCATCGTCCCTCACGG CGATGTCGTCGGCGCCGACGAGGTCCTCGTTCAGCAGCACGCGCCTCGCCGTTCCGTCGAAGGCGTCCACCTTGAAGACC TTCCCGGTGCTCGATTGCACCACCAGGAGGTAACCCTTGCTGACGTAGGTGATCCCGTTGAGCCCTAGGAGGTTGATGTC GCCGTCAACGGGAGGTGTGTTTGCCGGCGAGAACATCGGGGATCTGGAGAAGATCGAGGCGTGTCCGTCGGCGGTGACCT TCCAGATGAAGTTCCCGGCGGAGTTGGTGACGAAGGCGTTGCCGTGGTGATCGACGGCGACGTCGTTGGCTGCGGCGGGG TGGTCATCGTCGGAGGGGAGTGGGGTGAGGAAGAGGCGGTCGCGGGTGCGGAGGTCGTAGGCGGCGAGGGCGTTGAACGG AGGGAGGGGAGGGTGGGAGTGGACGACAGCGAGGAGGCGGTCGCGGGGTGAATTGACGGCGAGACCGAGGATGGAGGCGC CGTCAGGGAGGGAGGGGTCGGTGATGAAGGTTTCGACGACGCCGGCGTCAGAGACGGCGGCGATGGTGCGTTGCCGGTAG GATCCGAGGAGGAAGTGCTGGGCTCGTGGGTCCCACGTGAGGGATTCTGGGTACAAGTTCGGTGACCGGAAATTGATGAC GTGAGCGCTCCGAGCGAGAATTGGGCTTGGGCCCAATAATATTACAAAGAAGAAAACGAAGAAGAAGAAGAAGATTGAGA TTTTCATGGTTGGTGCTTGGAGAGAGTGTGAAAGTGTGGGTAGTAATTGAACTCAGAATTAGAAGATTAAGTTAGTATAG GTGGTGCATTGCATGGTTGAAGAATGGGTAAGTGAAAGTGAAAGCAAACAAATATACCATTTAAGGGGTTGCTTAAACAT TTTCTTTAACAAAATCGAGCAATTTAGGGGTTGACTAAGATTTGTGTTTGCAACAAATATGCATATATTAGCATAATAAT AAACTAATTTTATCTCTATCTTTATAGATAATACAAATCTAAAATATTAAAAAAACTATATAACAAACCTTATCTCTATT TCTAATGTAACAAGCTCAGTATATATATAAGTTGTAACAACTAA
CDS sequence (LotjaGi1g1v0525700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGTTGCCGCCAAGAAAACCAAGAAGACCCATGAGAGCATTAACAACAGGCTCGCTCTGGTGATGAAGAGTGGCAAATA TACTCTAGGTTACAAAACTGTTCTCAAATCACTGAGAAGTTCCAAAGGGAAACTGATTATCATTGCCAACAATTGCCCAC CTTTGAGGAAGTCAGAGATTGAGTATTATGCTATGTTGGCAAAGGTTGGAGTTCATCACTACAATGGGAACAATGTTGAT CTGGGCACTGCATGCGGCAAATACTACAGAGTGTGCTGCCTCAGCATTATCGATCCTGGTGATTCTGATATCATAAAGAC ATTGCCCAGTGACCAGTAA
Protein sequence (LotjaGi1g1v0525700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MVAAKKTKKTHESINNRLALVMKSGKYTLGYKTVLKSLRSSKGKLIIIANNCPPLRKSEIEYYAMLAKVGVHHYNGNNVD LGTACGKYYRVCCLSIIDPGDSDIIKTLPSDQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 112 | 112 | 3.2E-73 | – | |
| Gene3D | 1 | 105 | 105 | 1.2E-54 | ||
| PANTHER | 1 | 112 | 112 | 3.2E-73 | ||
| Hamap | 12 | 109 | 98 | 21.237 | ||
| Pfam | 13 | 105 | 93 | 4.0E-24 | ||
| SUPERFAMILY | 13 | 106 | 94 | 5.44E-35 | ||
| ProSitePatterns | 24 | 48 | 25 | - | ||
| ProSitePatterns | 80 | 100 | 21 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. | ||
| Molecular function | Structural constituent of ribosome | The action of a molecule that contributes to the structural integrity of the ribosome. | ||
| Cellular component | Cytosolic large ribosomal subunit | The large subunit of a ribosome located in the cytosol. |
Expression pattern of LotjaGi1g1v0525700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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