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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0534100 |
| Transcript ID | LotjaGi1g1v0534100.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Aquaporin; TAIR: AT4G01470.1 tonoplast intrinsic protein 1;3; Swiss-Prot: sp|O82598|TIP13_ARATH Aquaporin TIP1-3; TrEMBL-Plants: tr|I1JDR9|I1JDR9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0534100 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:106243669..106247708) extracted from Lotus japonicus Gifu genome v1.2.
GTTCAGAAAATAATTTAGGCTTAATTCCAGTTTGGGCCCCTGATGTTTCACAAATGAGCGGTCTGCATCCCCTGTGTTTA AAATGTGCGGTCAAACTCCCTCATGTTTCTAAAACGGTCGATTAAAGCCCTTCCGTCCATCTCCGTCAGTTGACCAAACG GAAATGCTGACGTGTCACTTATTTAATTCATAAAATATAGGCTACTAATTGGTGACGGAAATAATCCGTCACAAAATCCT TCACCCAATACCTCTCACTCTCTTTTCTCCTCTCCCTAACAACACCATCTTCTTCATTTACCTTCTGCCTAACGCTATTC TTCTTCCTTGTCGTCGTCTTCCATCCCACCACCACCACCACCAATCCCATCACCACCAAAATCCTAACCTGCAAACTGAA CCACACCCAACAACCACACACTCACCCCACCCGCAGAGAACCTCTTCCTCTTTTTTCCCCCAACAACCCCACCCCCAGCA AACTGAGCCGCGACCACCCATAAACCCAACCCCACCCCAGTAAACACCACAACCCAGAGATGAAGGAGGAAAAGGTGTGA CAGAAATAGATCGGAGTCATAGCTGCTGAACGAGATCCAGCCCATGGTGTATGGTGGGTGGGTGAGGGCTTCTGGGTTTT TGGGGGGTTGGTGGGTCTCTTTCTCCTATTCTTATTCTTGTTCTGATTTTTCTAGATTTCAGGGTGTATGATTTTGTGGG TTGGCTGTTGTATTTGGGGGTTTGAAGATGGAGCTTTGGTTGGGGGCGATGGTGAGGGTGGGTTGCAATGGATTTTTGAG GGGTTGGTTTTTGGGATTTGGTGGTTGGGGGCGATGGTGGTGGTGGGCTCGATGGGATTTTGATCGGTGGGGGTGGGTTT CGATGGAGTGAGTTTTGGGGATGGGGTGGGGTGAGTTCTGGGTTCTGGGTGGGGATGGGTTGCTGATGGGTTGCATTTTG AAGATGATGATGAATAATTGAATAATTTTTGCCTCCTCAAATCCCTCTTCTCATCTGAATTTGGGTTGAAAAGCTTAAAG CTTTCAACTTTTTTTCTCATTAAACAAGGGTCAGATCTGGTGGTTGGGGGTGATGCTTCTGAAATCTGGGTTTTGAAAGA TGTTGAAGATGAAAAAGAGAAGGACACAGAACATGGCACACAAAGCTGCTGGGGAGGAGCCTTTGCCTGAGGAAGATCCT TCAAACCCCATTTTCAAGCCACTACCTGAGCCATCACGGTTGGAGAATTTCCTCATAACAAACCAAATTTCTAACTACTG CAACCAATTTCCGTTTGGTCAACAGACGGAAGCTAACGGAAGGGCTTCGTTAGCACAGTTTTGTAACAAAGGGGAGCTTG ACCGCAACTTTTATACACGGGGGGTGCGGATCGCCCATTCTTGAAACATCAGGGGCCCAAACTGGAATTAAGCCAATAAT TTATTATTGGCTTTCATAAATAATTTATAATCAAAATAACGTATAAGTTTTTTTTTTCAGCATTGATTTTATTTATGTAA TCAATTTTACAAGGATTTCCAAACGTGTTAGGAGTCTCATGGCGGATTCAAACATTCTTTATAGTCTATATTTCCATGGT GTCACCATTGTTATATTATGAAACTCAAATCAATAACTACACTAAAGAAATGCTAGGCTAGCCTGCACTTTCGCTTGTTA TGAAAATGTTGCATAACCTTGTGTATGATTCATTGATTCCTTATTAGATCTCCAATTTCAGCTATAGCTACATCACATCA CAGCCACATAAACATGTCAATTCAAAACCATGACCAAATCACCTATACAACAAGTGTCTTCACTCCACAGTCCTTATAGG CTGCATGCTTGCATCATTCTACACACTCTCACTGACCGTTTCCTTGGCCGTTAATTCTGGTATTTTATAAAGACCAAACG AAGCTCTCACAGTTTTCCCTCACTTTTAAATTTTAACCGAAGTATAGACATAGAAACAGAATATCAAGAAGCACATTGGT TCTGATTCCTGAAGTTATAATAATGCCAATCTATAGAATTGCAATTGGGTCTCCTGGTGAGGCTGGCCAGCCTGATGCAA TTAGAGCAGCATTTGCAGAATTCTTCTCCATGCTTATCTTTGTTTTTGCTGGCCAAGGCTCTGGCATGGCTTACAGTGAG CACTTTTTTTGCAAACTTTTCCTTTCATTCAAAAAAATGTGTTTCAAAATCCCATCTCTCTCTAACATTTAGGGCGTGTT TGGATAAACAATGTTTTAAGCGCTTATGTAAATAAGTACTTATCACATATTCACATGAATGCTTATTCATTGAAATTATT TGAAAAACTTATTCAGTAAACTCAAAAGAGCTTATAAGCAGGTATAAGCGGTTTTGCAAAAGTTAATATAAGAAGACTAT CAAGATAAACTCATAGCATAACTGAATCAACTAATTTTTCCTCAGAATTAATTCCGGCATCCCGGAGGCTATCGAAATGA CTACTTATTGGTTATTTTGGCAGGCAAAATTACCAACAATGGACCTGCAACACCTGCTGGTCTCATAGCTGCATCACTTT CTCATGCATTTGGGCTTTTTGTGGCTGTTTCTGTTGGGGCAAACATTTCTGGTGGCCATGTGAACCCTGCAGTCACATTT GGGGCTTTCATGGGAGGAAACATAACCCTGTTGAGAAGTATTTTGTATTGGATTGCTCAGTTGCTTGGTTCAGTTGTTGC TTGCATCCTCCTCAAGTCTGCAACTGGTGGAATGGTAACCATTAAGCTTCAGCTTTAAACACTTCTACTCATAGTTGATC CTATTATAGCATCTTTGCATCAGCTTATATTTTTTAGAATCAATTCCAGCACCCAGATGCTACTCAGTGTCAGCTTAGTT CCACGTTTGGGAGCCTTAGATGCAATTCTCATTGACAATCAACTTAGTGCATGTTTGGATACATAGAGGAAAACTAGAGA GTCAAGATCACGATGGAATAATGGATAGAAACAACTTCCCTAAGCTTTTGTGATTGTTCACCGTGATTTTGACTTCATAG TAGATTTCCAGCATGCTTCCAAACATGTACTTAGAGAATTGATTTTATTCTCAAAATCAATGTTGCGAGAACCTAGAGAA ATTAGCTTTTGCGGTTCACATCATCAATTGTGGAATTCCATAATTAGATTTCCCAATAGAAATTAATTTCCCAAAAACAT ATCCAAAACCACTTCACATTCAACTCGAACTTACTTTTGCCTTAATCAATTTTACTAAAATCAATTTTATCAAAAATCAA TAATAACAATGCTTATCCAAACACGCACTCACTAAAGCTTCGCTCCAGATGGATTTTTAAAGATTGACTAAAATTTTGTT TTTCCAATTTGTACATTGCAGGAAACATCAGCTTTTGCTCTATCCTCTGGGGTGTCTGTGTGGAATGCACTAGTTTTTGA AATTGTGATGACATTTGGGTTGGTATACACAGTTTATGCCACAGCAGTGGATCCAAAGAAAGGGAATGTGGGCATTGTTG CTCCAATTGCCATTGGTTTTCTTGTGGGAGCCAATATCTTAGTTGGTGGTGCTTTTGATGGTGCATCAATGAACCCAGCT GTGTCCTTTGGGCCTGCTGTTGTTAGCTGGACCTGGACTCATCACTGGGTCTATTGGGCTGGCCCATTCATGGGAGCAGC ACTTGCGGCCATTATTTATGATAATATCTTCATTGGTGATGATGGTCATGAACCCCTCACAAACAGTGATTTCTAGATTT TATTTTATTTTGTTTTAATTTATTGTATGGAGGAGTGAATAAATTGTTGAAGATTTCAACTCCTTTTGAGATGGTTAGGA ACTATAACAAATTTTGAGTGCTTTATAATTTTGTTGTAGAATTTAAGATTTCCCATTCTTTGATGTAATAGAGATGAACT AGGAAATTTCTGGCTGTATTCTTACTTGTTAAATCACTGAACTTGTCATTTCCTGGAATTAATTATGAACTGATACAAGG TTTGAAAAAATTCATTGTAGTTGAAAGGGAGAAACTAAAG
CDS sequence (LotjaGi1g1v0534100.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCCAATCTATAGAATTGCAATTGGGTCTCCTGGTGAGGCTGGCCAGCCTGATGCAATTAGAGCAGCATTTGCAGAATT CTTCTCCATGCTTATCTTTGTTTTTGCTGGCCAAGGCTCTGGCATGGCTTACAGCAAAATTACCAACAATGGACCTGCAA CACCTGCTGGTCTCATAGCTGCATCACTTTCTCATGCATTTGGGCTTTTTGTGGCTGTTTCTGTTGGGGCAAACATTTCT GGTGGCCATGTGAACCCTGCAGTCACATTTGGGGCTTTCATGGGAGGAAACATAACCCTGTTGAGAAGTATTTTGTATTG GATTGCTCAGTTGCTTGGTTCAGTTGTTGCTTGCATCCTCCTCAAGTCTGCAACTGGTGGAATGGAAACATCAGCTTTTG CTCTATCCTCTGGGGTGTCTGTGTGGAATGCACTAGTTTTTGAAATTGTGATGACATTTGGGTTGGTATACACAGTTTAT GCCACAGCAGTGGATCCAAAGAAAGGGAATGTGGGCATTGTTGCTCCAATTGCCATTGGTTTTCTTGTGGGAGCCAATAT CTTAGTTGGTGGTGCTTTTGATGGTGCATCAATGAACCCAGCTGTGTCCTTTGGGCCTGCTGTTGTTAGCTGGACCTGGA CTCATCACTGGGTCTATTGGGCTGGCCCATTCATGGGAGCAGCACTTGCGGCCATTATTTATGATAATATCTTCATTGGT GATGATGGTCATGAACCCCTCACAAACAGTGATTTCTAG
Protein sequence (LotjaGi1g1v0534100.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MPIYRIAIGSPGEAGQPDAIRAAFAEFFSMLIFVFAGQGSGMAYSKITNNGPATPAGLIAASLSHAFGLFVAVSVGANIS GGHVNPAVTFGAFMGGNITLLRSILYWIAQLLGSVVACILLKSATGGMETSAFALSSGVSVWNALVFEIVMTFGLVYTVY ATAVDPKKGNVGIVAPIAIGFLVGANILVGGAFDGASMNPAVSFGPAVVSWTWTHHWVYWAGPFMGAALAAIIYDNIFIG DDGHEPLTNSDF
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 19 | 19 | - | – | |
| PANTHER | 1 | 252 | 252 | 2.7E-153 | ||
| PANTHER | 1 | 252 | 252 | 2.7E-153 | – | |
| Gene3D | 5 | 252 | 248 | 5.0E-84 | ||
| Pfam | 16 | 234 | 219 | 1.6E-70 | ||
| SUPERFAMILY | 17 | 241 | 225 | 3.66E-66 | ||
| Phobius | 20 | 44 | 25 | - | – | |
| PRINTS | 21 | 40 | 20 | 1.1E-48 | ||
| CDD | 21 | 237 | 217 | 2.2293E-65 | ||
| TMHMM | 22 | 44 | 23 | - | – | |
| Phobius | 45 | 55 | 11 | - | – | |
| Phobius | 56 | 79 | 24 | - | – | |
| TMHMM | 57 | 79 | 23 | - | – | |
| PRINTS | 65 | 89 | 25 | 1.1E-48 | ||
| Phobius | 80 | 98 | 19 | - | – | |
| ProSitePatterns | 83 | 91 | 9 | - | ||
| TMHMM | 99 | 121 | 23 | - | – | |
| Phobius | 99 | 121 | 23 | - | – | |
| PRINTS | 102 | 121 | 20 | 1.1E-48 | ||
| Phobius | 122 | 132 | 11 | - | – | |
| Phobius | 133 | 160 | 28 | - | – | |
| TMHMM | 134 | 156 | 23 | - | – | |
| PRINTS | 147 | 165 | 19 | 1.1E-48 | ||
| Phobius | 161 | 171 | 11 | - | – | |
| TMHMM | 171 | 193 | 23 | - | – | |
| Phobius | 172 | 193 | 22 | - | – | |
| PRINTS | 180 | 202 | 23 | 1.1E-48 | ||
| Phobius | 194 | 252 | 59 | - | – | |
| TMHMM | 217 | 239 | 23 | - | – | |
| PRINTS | 217 | 237 | 21 | 1.1E-48 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Channel activity | Enables the energy-independent facilitated diffusion, mediated by passage of a solute through a transmembrane aqueous pore or channel. Stereospecificity is not exhibited but this transport may be specific for a particular molecular species or class of molecules. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of LotjaGi1g1v0534100.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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